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Full Paper
An Efficient Synthesis of Tenofovir (PMPA): A Key
Intermediate Leading to Tenofovir-based HIV Medicines
Brenden P. Derstine, John W. Tomlin, Cheryl Peck, Jule-Phillip Dietz, Brenden T
Herrera, Flavio Cardoso, Dinesh J. Paymode, Andrew C Yue, Anthony J Arduengo, Till
Opatz, David Snead, Rodger W. Stringham, D. Tyler McQuade, and B. Frank Gupton
Org. Process Res. Dev., Just Accepted Manuscript • Publication Date (Web): 29 May 2020
Downloaded from pubs.acs.org on May 29, 2020

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Page 1 of 22 Organic Process Research & Development

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An Efficient Synthesis of Tenofovir (PMPA): A Key
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Intermediate Leading to Tenofovir-based HIV
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Medicines
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Brenden P. Derstine, † John W. Tomlin, † Cheryl L. Peck, † Jule-Phillip Dietz, ‡ Brenden T. Herrera,
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23 Flavio S. P. Cardoso, † Dinesh J. Paymode, † Andrew C. Yue, † Anthony J. Arduengo III, § Till
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25 Opatz, ‡ David R. Snead, † Rodger W. Stringham, † D. Tyler McQuade*† and B. Frank Gupton*†
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28 †
Department of Chemical and Life Sciences Engineering, Virginia Commonwealth University,
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31 Richmond, Virginia 23284, United States
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34 Department of Chemistry, Johannes Gutenberg-University, Duesbergweg 10–14, 55128 Mainz,
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36 Germany
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39 §
40 Department of Chemistry, The University of Alabama, Tuscaloosa, Alabama 35487, United
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42 States
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3 TABLE OF CONTENTS
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3 Abstract: Herein, we report further improvements to the synthesis of tenofovir 1, the precursor to
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6 tenofovir disoproxil fumarate (TDF) and tenofovir alafenamide fumarate (TAF). Starting from
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8 acyclic precursor diaminomalononitrile 12, a four-step protocol to tenofovir 1 will allow for
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10 vertical integration for more manufacturers. The key transformation is a convergent one-step
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procedure from 6 as compared to the current commercial process, with an improved yield from
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15 59% (two steps) to 70%. Further improvements include eliminating the need for problematic
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17 magnesium tert-butoxide (MTB) and significant solvent reduction by avoiding an intermediate
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workup. With the costs of HIV/AIDS treatments remaining a barrier for those most in need,
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22 lowering the raw material/processing costs and increasing the security of supply can increase
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24 patient access.
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28 Keywords: tenofovir • hydroxypropyl adenine • hydroxypropyl imidazole • diaminomaleonitrile
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30 • continuous manufacturing
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33 INTRODUCTION:
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37 In 2018, the World Health Organization (WHO) reported that only 60% of the 25 million people
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39 in the developing world living with HIV/AIDS were receiving treatment.1a While drug regimen
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41 costs are low from a Western perspective – $60-70/patient/year, the costs remain too high to ensure
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that all who need the medicines gain access. With the dramatic declines in prices of these regimens
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46 the relative impact of formulation and packaging costs has increased. That said, the cost of the
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48 active pharmaceutical ingredient (API) still comprises a significant percentage of the drug
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50 product.1b Cost reduction can be achieved by using lower cost raw materials and by streamlining
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53 the manufacturing processes. We predict that new routes that leverage alternative starting materials
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55 will incentivize a different spectrum of market participants relative to the current state of practice.
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3 For example, most TDF manufacturing processes utilize adenine and propylene carbonate as
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6 starting materials. A new process that starts from hydrogen cyanide and a chiral amine might
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8 appeal to a different set of producers who are experienced in the handling of hydrogen cyanide.
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10 The number of intermediate and active ingredient manufacturers is known to correlate with the
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products price – increased competition encourages lower prices in these high-volume medicine
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15 markets.
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33 Scheme 1. Synthetic Strategies for tenofovir disoproxil fumarate and
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tenofovir alafenamide fumarate.
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38 Tenofovir disoproxil fumarate (2) is a pro-drug of the nucleotide analogue reverse
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40 transcriptase inhibitor (NRTI) tenofovir (PMPA, 1) that was developed for the treatment of
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HIV/AIDS and hepatitis B (Scheme 1).2–4 TDF is currently used as a frontline treatment for
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45 patients with HIV/AIDs and over 1600 MT were produced in 2019 with a forecasted demand of
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47 greater than 1700 MT in 2020.5,6 The first-generation manufacturing process for TDF was
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described by Gilead Sciences Inc. (Scheme 2).2 Adenine was transformed into TDF in a three-
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52 stage, four-step sequence. The lone stereocenter is installed in Stage 1 via alkylation of adenine
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54 with (R)-propylene carbonate (5). Base-mediated alkylation of the resulting secondary alcohol
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3 with tosylated diethyl (hydroxymethyl)phosphonate (DESMP, 8) gave the intermediate
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6 phosphonate ester (not shown). The free phosphonic acid PMPA (1) is formed by action of TMSBr
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8 and then esterified with chloromethyl isopropyl carbonate (CMIC, 9) to yield crude tenofovir
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10 disoproxil (TD, 10). Treatment of crude TD with fumaric acid gives crystalline TDF in a 13%
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overall yield.
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29 Scheme 2. The CHAI process to tenofovir disoproxil fumarate.
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The manufacturing process described in Scheme 1 was improved by Clinton Health Access
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37 Initiative (CHAI) to give TDF in a 24% yield.7 Currently, TDF is being synthesized commercially
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39 by at least 17 manufacturers, including Gilead, Mylan, Hetero, Zhejiang Huahai, Stride, Lupin,
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Aurobindo and Laurus Labs. Although significant incremental improvements have been made in
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44 the manufacture of TDF, the basic chemistry to produce this API remains the same. The current
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46 manufacturing process continues to offer opportunities for improvement, in particular the first two
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48 stages. In Stage 1, the alkylation of adenine results in a regioisomeric impurity (7) – roughly 10%
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51 of the material is lost to undesired N-alkylation.5 The purity profile can be improved using toluene
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53 as an antisolvent but the undesired regioisomer is still present (7-8%); however, recrystallization
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55 using 1:1 MeOH/iPrOH provided the desired material in 66% overall yield with 1.7% of the off-
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3 regioisomer remaining.7,8 A survey of the import/export databases such as Datamyne or Zauba
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6 revealed the price of adenine has fluctuated in recent years suggesting that routes that avoid using
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8 adenine could improve overall market robustness.
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10 The transformations in Stage 2 pose further challenges.7–11 The two reactions are telescoped
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because the phosphonate ester intermediate is water-soluble, prone to hydrolysis to the monoester
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15 and difficult to crystallize. Another issue is the base used in Stage 2a to couple the (R)-1-(6-amino-
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17 9H-purin-9-yl)propan-2-ol (HPA) with DESMP. The base reported most often, Mg(OtBu)2,
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provides excellent conversions (>90%)8 but has drawbacks including: (1) high cost, (2) poor
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22 reproducibility – lot to lot variation, and (3) higher cost workup and purification.7 We sought to
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24 create a process that avoided adenine, propylene carbonate and Mg(OtBu)2. Herein, we describe
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26 our approach that delivers high quality 1 using alternative starting materials at a cost that is
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29 comparable to the existing manufacturing route.
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33 RESULTS AND DISCUSSION:
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53 Scheme 3. TDF Atom Assignments Based on Low-Cost,
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55 Commodity Raw Materials.
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3 We performed a retrosynthetic analysis of PMPA where we constrained our starting materials to
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6 low-cost raw materials (Scheme 3). Each proposed fragment can be sourced to simple, high-
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8 volume raw materials such as hydrogen cyanide, L-threonine, phosphorous trichloride, ammonia
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10 and formaldehyde. In addition, we defined a process which facilitates the synthesis of both
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tenofovir medicines TDF and TAF. As 1 is a common intermediate in both TDF and TAF
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15 syntheses, targeting 1 for improvement was deemed a high priority.
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17 We considered many strategies and the most promising was identified to include 5-amino-4-
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cyanoimidazole bearing a chiral hydroxypropyl arm at N1 (HPI, 15) as an intermediate. Nippon
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22 Soda Company described the synthesis of 15 from 12 in a patent giving us hope that a market for
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24 this material might be possible.12 The Nippon Soda Company’s original route provided overall
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26 modest yields (~50%) and in our hands had a very challenging work-up where viscous polycyanide
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29 polymers clogged filters and colored solutions a deep red color that was hard to remove from
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31 product. While these types of substrates (including 15) are commonly used to construct
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33 functionalized imidazoles and nucleobases,13–15 the synthetic routes often suffer the same
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challenges. The route needed process improvements if the chemistry were to become more viable.
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48 Scheme 4. Synthesis of HPI (15) Utilizing Low-Cost Reagents
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3 Scheme 4 depicts our improved route to 15. The process begins by condensing
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6 diaminomaleonitrile (DAMN), a commercially available tetramer of HCN, and
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8 trimethylorthoformate (TMOF) yielding formimidate 13 in good yield. The addition of (R)-1-
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10 aminopropan-2-ol (14 – one step from L-threonine)16 yielded the formamidine intermediate that
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cyclizes to (R)-5-amino-1-(2-hydroxypropyl)-1H-imidazole-4-carbonitrile, (HPI, 15) in 85% yield
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15 using Ba(OH)2.17 Substitution of the base used in the original Nippon Soda Company patent
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17 (NaOH) with Ba(OH)2 eliminated the polycyanide tars during crystallization enabling easier
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isolation, higher yields and product with little color. While HCN evolution was not observed in
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22 this process, precautionary measures should be considered due to potential HCN generation in the
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24 handling of these materials.
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26 We proceeded to investigate cyclization conditions to form the adenine core (Scheme 5). Initial
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29 studies were conducted using formamidine acetate in diglyme affording 6 with high conversion as
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31 monitored by HPLC. The use of diglyme as the solvent presented two challenges: 1) crystallization
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33 of the product was variable, often yielding a black oil; 2) diglyme is expensive when alternative
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solvents such as DMF and NMP were considered.
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Scheme 5. Novel Synthesis of PMPA Utilizing the HPI Intermediate.
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3 DMF and NMP were investigated with DMF providing higher yields. Using DMF, the reaction
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6 proceeded in high conversion and purification was easily achieved using 1:1 (v:v)
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8 isopropanol/MeOH7,8 as an anti-solvent (CHAI process) once the DMF was removed. However,
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10 initial studies with these isolation conditions proved to not be translatable to larger scale due to
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addition of the anti-solvent above its boiling point. Addition of the solvent below this temperature
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15 made removal of excess formamidine acetate infeasible, warranting further investigation. Screens
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17 of alternative anti-solvents and crystallization conditions were conducted to maximize the isolated
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yield. Anhydrous isopropanol at -15°C furnished HPA in 93% yield and 99% purity on a 25-gram
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22 scale. Further details on process optimization and reproducibility are available in the Supporting
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24 Information.
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26 Production of PMPA via a more efficient alkylation that avoided the Mg(OtBu)2 became our
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29 next focus. We hypothesized that convergency could be increased by introducing the phosphonate
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31 bond via the ((tosyloxy)methyl)phosphonic acid. We postulated this approach might also enable
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33 us to obviate the use of Mg(OtBu)2.
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46 Figure 1. Putative Role of Mg2+
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49 Counterion in Alkylation Reaction.
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52 We tested our hypothesis by screening the reaction shown in Table 1 where the type of base and
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55 solvent were varied. Based on previous reports where the Mg2+ counterion proved critical to
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3 coupling, we screened a range of lower cost magnesium-derived bases (Figure 1). Using 3 – 5
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6 equivalents at room temperature in polar aprotic solvents such as DMPU or NMP, no desired
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8 product was observed (entries 1-5, Table 1).7,8 Previous reports of PMPA and derivatives thereof
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10 discussed bases with lithium or sodium as the counterion.18 LiHMDS was also investigated
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because lithium cations are known to engage multiple coordination partners. The use of LiHMDS
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15 regardless of solvent, provided lower conversion (e. g. entry 6). Extending the screen to higher
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17 temperatures while maintaining 3 equivalents of base (70 °C, entries 7) gave trace amounts of
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PMPA (Table 1) with NaOtBu giving the best results (20 – 25%). Further studies indicated that
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22 the yield of PMPA was improved to 64% by increasing the loading of NaOtBu to 7 equivalents
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24 and maintaining a reaction temperature of 70 °C (Note: reactions were conducted on 2.4 mmol
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26 scale). Lewis acids were also investigated as potential candidates for facilitating O-alkylation via
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29 activation of the leaving group. A variety of di- and trivalent cations were screened but improved
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Table 1. Screening of reaction conditions
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Equiv Temp Yield
45 Entry Base
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Solvent Time
(°C) b

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47 1 MeMgCl 3 DMPU 7h 25 0
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2 MeMgCl 3 NMP 7h 25 0
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50 3 iPrMg•LiCl 3 DMPU 7h 25 0
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52 4 iPrMg•LiCl 3 NMP 7h 25 0
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55 6 LiHMDS 3 DMPU 7h 25 21
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3 7 NaOtBu 3 NMP 12 h 70 25
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5 8 NaOtBu 5 DMF 7h 70 61
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7 9c NaOtBu DMF 16 h 25
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9 10 KOtBu 3 NMP 3h 70 0
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11 We found the free phosphonic acid to be interchangeable
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13 tosylphosphonic acid (4.8 mmol), Solvent (1.5 mL); see
14 supporting information. bDetermined by HPLC. cThe
15 equivalents of the tosylphosphonic acid was 1.7 for this
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20 In general, we observed sodium-derived bases led to higher conversions and the pKa of the base
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22 was found to be critical to the chemoselectivity of the alkylation reaction; these bases favored O-
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alkylation (PMPA formation) while other cations and bases lead to more side products (Supporting
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27 Information, Table S8). Finally, polar aprotic solvents (DMF, DMPU, NMP) consistently gave the
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29 highest conversion of PMPA. Thus, we moved towards optimizing the coupling between HPA and
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31 the tosylphosphonic acid using NaOtBu in DMF. We turned our attention back to the temperature
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34 of the coupling of the reaction, postulating that the reaction could be conducted at room
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36 temperature. Further investigation into the balance between the equivalents of base and phosphonic
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38 acid led to the optimized reaction parameters: 6 equivalents NaOtBu, 1.7 equivalents of the
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tosylphosphonic acid in DMF at room temperature for 16 hours with increased isolated yields upon
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43 increasing reaction size from milligram to multi-gram scale (Note: aged alkoxide bases perform
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45 poorly, presumably to due to the absorption atmospheric water). Yields have been reproducible
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around 70% and the reaction has been conducted on a 25-gram scale. More importantly, the
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50 convergent process is a significant improvement to the Gilead and CHAI processes. The outcome
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52 is overall higher yields and decreased purification and processing costs. Further development of
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54 this chemistry into a scalable process is described in the Supporting Information. We have
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3 developed stepwise experimental descriptions which are presented in the Supporting Information
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6 and are designed to help those who wish to implement the process; annotated batch sheets are
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8 available upon request.
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10 We recognize that other modalities exist beyond batch approaches and we explored alternatives.
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We set out to develop a continuous process to reduce unit operations. Scheme 6 illustrates the basic
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15 approach. We chose a commercial peristaltic pump-based reactor system fitted with a solid column
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17 of NaOH to demonstrate that a continuous process from 12 to 15 was possible.
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34 Scheme 6. Continuous Process for the Preparation of HPI.
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37 The continuous process maintains a similar sequence of synthetic steps compared to the batch
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39 process with a couple of noteworthy differences. We found that diglyme was necessary to ensure
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41 that all starting materials remained soluble and to enable complete end-to-end telescoping. The
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44 process was initiated by combining DAMN (1.38M in diglyme) with TMOF (4.1M) and (TFA 3%
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46 w/w) to form the imidate followed by condensation with the optically active amine. The imidate
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48 intermediate (18) was then cyclization by passing through a column filled with NaOH.
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While this flow process has many advantages (few unit operations, a single solvent), the process
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53 has liabilities. At optimal performance, the system had a productivity of 8 grams/hr of HPI (15);
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55 however, the quality of the HPI degraded over time. We hypothesized that this performance decline
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3 resulted from precipitation of cyanide oligomers (byproduct of the annulation19) onto the surface
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6 of the sodium hydroxide pellets. When the reaction mixture first entered the hydroxide-column,
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8 the color of the solution was pale-yellow throughout the residence time. After just a few minutes,
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10 the column begins to be stained with brown/red/black material. After a few hours, the color of the
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solution that exited the column became darker brown as the loading capacity of the column was
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15 exceeded. Regardless, we were able to demonstrate that for those manufacturers leveraging
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17 continuous processes, incremental improvements to our overall approach could potentially yield
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an end-to-end continuous process. The NaOH column issue could be solved by using a continuous
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22 stirred tank reactor (CSTR) containing our Ba(OH)2 approach we described in the batch section.
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24 Our objective was to demonstrate the basic concept in this case.
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26 In summary, we have reported several advancements – both batch and continuous processes –
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29 towards the synthesis of tenofovir (PMPA, 1). We have demonstrated that the functionalized
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31 adenine core can be constructed from high-volume, low-cost commodity materials. The
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33 transformations are efficient, show promise for further scaling (we demonstrated a minimum of 25
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g scale) and increase the potential for new market entrants to participate. Tenofovir is a key
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38 intermediate in TDF and TAF, with the former being produced at 1600 MT per annum and sold
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40 for $140/kg. A 10% reduction in cost of goods amounts to a savings of $22.4 million/year –
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resources that procurers can use to purchase more medicines.
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45 EXPERIMENTAL
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47 Reactions were monitored by GC-MS or HPLC using the methods indicated. Formation of
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49 MADI, including the amidine intermediate, was monitored via GC-MS. The column used was an
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52 Agilent J&W GC column, type HP-1 (30 m x 0.320 mm, 5 µm film). The oven was maintained at
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54 200 °C and the inlet at 225 °C for the duration of the method (20 minutes). A split ratio of 50:1
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3 was used. The flow rate was 0.8 mL/min with helium as the carrier gas. HPI, HPA and PMPA
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6 were monitored using identical HPLC methods. The mobile phase was a mixture of 15% MeOH
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8 and 85% aqueous potassium phosphate buffer (pH 7.6, 10 mM). The chromatograms were
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10 acquired on an Agilent 1100 system using an Agilent Extend C18 column (5 µm, 4.6 mm x 250
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mm) and were monitored at 245 (HPI) and 260 nm (HPA and PMPA). All yield values have been
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15 adjusted for purity based on either area % or weight % assays.
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17 Preparation of methyl N-2-amino-1,2-dicyanovinyl)formimidate (MADI), 13: To a 2-L
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three-neck round bottom flask equipped with an overhead stirrer and thermocouple was charged
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22 2,3-diaminomaleonitrile (DAMN), 12, (100 g, 1.0 equiv., 926 mmol) and reagent grade MeOH
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24 (400 mL). The mixture was stirred at room temperature for 5 minutes. Trimethyl orthoformate
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26 (TMOF) (120 mL, 1.2 equiv., 1.11 mol) was charged to the reaction mixture in one portion.
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29 Afterwards, trifluoroacetic acid (TFA) (50 µL, 0.005 equiv, 4.63 mmol) was charged to the
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31 reaction in one portion. (This reaction is rapid and results in a thick slurry within 5 minutes,
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33 therefore, overhead stirring is required. Additionally, care should be taken to avoid adding excess
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TFA as this causes the reaction mixture to thicken to a viscosity where stirring is challenging.
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38 Poor mixing results in lower isolated yields.) The reaction was heated to an internal temperature
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40 of 40 °C and stirred for 2 hours. After consumption of the starting materials as determined by GC-
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MS, reagent grade hexanes (600 mL) was charged to the reaction mixture in one portion. The
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45 suspension was allowed to slowly cool to room temperature over the course of approximately 20
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47 minutes, then cooled to an internal temperature 0 °C and stirred for an additional hour. The solids
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49 were isolated by vacuum filtration and dried under vacuum to afford a pale-yellow solid, 13, in
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52 93% yield (128.9 g), with an GC-MS assay purity of 98%. 1H-NMR (600 MHz, DMSO-d6): δ =
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54 7.98 (s, 1H), 7.04 (bs, 2H), 3.82 (s, 3H) ppm. 13C-NMR (150 MHz, DMSO-d6): δ = 156.8, 123.0,
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3 114.8, 114.6, 98.2, 54.6 ppm. FTIR (ATR, neat) 3466, 3356, 2238, 2196, 1636, 1606, 1369, 1271,
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6 912, 799, 501 cm-1. HRMS (ESI) m/z calculated for C6H6N4OH [M + H]+ 151.0620, found
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8 151.0614.
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10 Preparation of (R)-5-amino-1-(2-hydroxypropyl)-1H-imidazole-4-carbonitrile (HPI), 15:
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To a 500-mL three-neck round bottom flask fitted with an internal temperature probe was added
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15 (R)-1-aminopropan-2-ol, 14, (18.2 mL, 231 mmol, 1.4 equiv.) and MeCN (25 mL) at room
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17 temperature. The solution was stirred for 5 minutes. MADI, 13, (25.0 g, 167 mmol, 1.0 equiv.)
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19
was suspended in MeCN (175 mL) and charged to the reaction mixture. Additional MeCN (15
20
21
22 mL) was used to rinse the reactor walls to rinse down any adhering solid. After the addition of
23
24 MADI, the reaction mixture turned dark brown and was stirred at room temperature for 2.5 hours.
25
26 Conversion to the desired amino-alcohol intermediate was monitored by HPLC while the
27
28
29 consumption of MADI was monitored by GC-MS. After complete conversion, the reaction
30
31 mixture was cooled to an internal temperature of 0 – 5 °C using an ice bath. Solid Ba(OH)2
32
33 monohydrate (37.9 g, 200 mmol, 1.2 equiv.) was charged with deionized H2O (113.7 mL). The
34
35
36
reaction was warmed to room temperature. As the reaction proceeded, the color turned from bright
37
38 red to dark brown with visible precipitate stirring at the bottom of the flask. Complete conversion
39
40 to the desired HPI product occurred at 1 hour 15 min as tracked by HPLC.
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42
After 1 hour 15 min, the reaction mixture was filtered on a Büchner funnel and the round bottom
43
44
45 flask was rinsed with MeCN (3 x 25 mL) to give a total volume of approximately 300 mL. This
46
47 was concentrated to approximately 200 mL via rotary evaporation under reduced pressure at 40
48
49 °C. The solution was then heated to 50 °C at which time the mixture turned dark brown. After
50
51
52 stirring in a 40 °C oil bath for 10 minutes, the solution was charged with DCM (200 mL) in one
53
54 portion and allowed to cool to room temperature over the course of 1 hour. The mixture became
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3 biphasic with a black oil visible in the bottom of the flask. The solution was then cooled to an
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6 internal temperature of 0 – 5 °C and stirred for an additional 1 hour. Upon cooling, precipitation
7
8 was observed and the mixture was filtered on a Büchner funnel with the black oil remaining in the
9
10 filtrate to afford HPI as a pale grey solid. The solid was dried under vacuum to yield 23.7 g of
11
12 1
13
product in an 82% yield corrected for a 96% HPLC purity based on area%. H-NMR (600 MHz,
14
15 DMSO-d6): δ = 7.11 (s, 1H), 6.07 (s, 2H), 5.06 (s, 1H), 3.85 – 3.69 (m, 2H), 3.65 – 3.50 (m, 1H),
16
17 13
1.03 (d, J = 3.9 Hz, 3H) ppm. C-NMR (150 MHz, DMSO-d6): δ = 147.9, 133.5, 117.6, 90.1,
18
19
64.8, 50.1, 20.6 ppm. FTIR (ATR, neat) 3159, 2208, 1570, 1174, 1090 cm-1. HRMS (ESI) m/z
20
21
22 calculated for C7H10N4OH [M + H]+ 167.0933, found 167.0926.
23
24 Preparation of (R)-1-(6-Amino-9H-purin-9-yl)propan-2-ol (HPA), 6: To a 500-mL 3-necked
25
26 round bottom flask, the mixture of (R)-5-amino-1-(2-hydroxypropyl)-1H-imidazole-4-
27
28
29 carbonitrile, 15, (HPI, 97.8% purity) (25.0 g, 150 mmol, 1.0 equiv.) and formamidinium acetate
30
31 (26.6 g, 256 mmol, 1.7 equiv.) was added in DMF (50 mL). The reaction vessel was equipped with
32
33 a J-KEM internal temperature probe and the mixture was heated to an internal temperature of 100
34
35
36
°C for 16 hours. After completion of the reaction as monitored by HPLC, the heating was turned
37
38 off and isopropyl alcohol (150 mL) was added. The reaction mixture was cooled down to room
39
40 temperature (25 °C). The reaction mixture was cooled to an internal temperature of -15 °C and
41
42
stirred for three hours at the same temperature. The suspension was filtered and washed with cold
43
44
45 (-15°C) isopropanol (38 mL + 37 mL). The isolated solid was dried in vacuum oven at 65 °C for
46
47 two hours to afford (R)-1-(6-amino-9H-purin-9-yl)propan-2-ol (HPA), 6, as a white solid, (26.67
48
49
50
g, 93% adjusted with a weight% of 99% by HPLC. The spectroscopic data are in accordance with
51
52 reported values. 1H NMR (600 MHz, DMSO) δ = 8.13 (s, 1H), 8.05 (s, 1H), 7.18 (s, 2H), 5.04
53
54 (bs, 1H), 4.18 – 4.05 (m, 1H), 4.05 – 3.94 (m, 2H), 1.06 (d, J = 5.9, 3H) ppm. 13C NMR (150 MHz,
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3 DMSO) δ = 155.9, 152.2, 149.7, 141.5, 118.5, 64.6, 50.1, 20.9 ppm. HRMS (ESI) m/z calculated
4
5
6 for C8H11N4OH [M + H]+ 194.1042, found 194.1040.
7
8 Preparation of (R)-(((1-(6-amino-9H-purin-9-yl)propan-2-yl)oxy)methyl)phosphonic acid
9
10 (PMPA), 1: A 500-mL three necked round bottom flask was equipped with a J-KEM internal
11
12
13
temperature probe, overhead stirrer and nitrogen line. The flask was charged with anhydrous DMF
14
15 (400 mL) and cooled to an internal temperature of 2 – 5 °C under an atmosphere of nitrogen. With
16
17 stirring (300 RPM), sodium tert-butoxide (74.5 g, 776 mmol, 6.0 equiv.) was charged to the
18
19
reaction vessel to afford a clear solution and a temperature increase of 12 °C was observed. To
20
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22 the clear solution was added (R)-1-(6-amino-9H-purin-9-yl)propan-2-ol (HPA, 92% purity) (25.0
23
24 g, 129.4 mmol, 1.0 equiv.) over 10 minutes with stirring (5 x 5 g portions). The yellow solution
25
26 was stirred at an internal temperature of 5 °C for 30 minutes. Solid ((tosyloxy)methyl)phosphonic
27
28
29 acid, 8, (58.5 g, 220 mmol, 1.7 equiv.) was added over 10 minutes in four portions (~14.6 g
30
31 portions), the internal temperature was not allowed to exceed 15 °C. After the addition was
32
33 complete, the reaction mixture was warmed to room temperature overnight (16 hours). After
34
35
36
complete consumption of the starting material, as indicated by HPLC, the solvent was removed
37
38 via rotary evaporation under reduced pressure. The residue was dissolved in 250 mL of water and
39
40 concentrated hydrochloric acid (approx. 40 mL) was added until pH = 2.8 – 3.0. A precipitate
41
42
formed and the mixture was stirred at an internal temperature of 5 °C for 3 hours then collected by
43
44
45 vacuum filtration. The resulting off white solid was washed with ice cold (~5 °C) H2O (25 mL),
46
47 an ice cold (~5 °C) 1:1 mixture H2O/acetone (25 mL) and ice cold (~5 °C) acetone (25 mL). The
48
49 solid was dried in vacuo at 75 °C overnight to yield PMPA, 1, as a white solid adjusted for weight%
50
51
52 of 97.1. (26.2 g, 70% adjusted for KF). KF Titration: 2.4%. Note: If the weight% of the isolated
53
54 material is undesirable an additional wash with ice cold water can be performed to increase purity
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3 with minimal loss of product (see Supporting Information). The spectroscopic data are in
4
5
6 accordance with reported values. 1H NMR (600 MHz, DMSO) δ = 8.15 (s, 2H), 7.25 (s, 2H), 4.28
7
8 (dd, J = 14.4, 3.7, 1H), 4.17 (dd, J = 14.4, 5.6, 1H), 3.91 (dd, J = 10.7, 5.3, 1H), 3.59 (p, J = 13.2,
9
10 2H), 1.03 (d, J = 6.2, 3H) ppm. 13
C NMR (150 MHz, DMSO) δ = 155.8, 152.2, 149.7, 141.6,
11
12
13
118.2, 75.3 (d, J = 12.1), 64.4 (d, J = 161.7), 46.4, 16.9 ppm. 31
P NMR (243 MHz, DMSO) δ =
14
15 16.6 ppm. cm-1. HRMS (ESI) m/z calculated for C9H14N5O4PH [M + H]+ 288.0862, found
16
17 288.0853.
18
19
ASSOCIATED CONTENT
20
21
22
23 Supporting Information
24
25 The Supporting Information is available free of charge at [link].
26
27
Detailed experimental procedures, optimization studies and characterization data
28
29
30
31
32 AUTHOR INFORMATION
33
34
35 Corresponding Author
36
37
38 *E-mail: bfgupton@vcu.edu
39 *E-mail: tmcquade@vcu.edu
40
41
42 Funding Sources
43
44 This work was supported by the Bill and Melinda Gates Foundation and the Gottwald Family
45
46
47
Foundation.
48
49
50 ACKNOWLEDGMENT
51
52
53 We thank Hari. P. R. Mangunuru, Andrew R. Ehle, Jenson Verghese, Eric Yu, Erin E. Striker,
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55 Daniel Rivalti, Nakul S. Telang, and Saeed Ahmad for providing valuable insights leading to the
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3 creation of this manuscript. We also thank our other M4ALL Team Members led by Professor
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6 Timothy Jamison and Oliver Kappe for their weekly insights. In addition, we express gratitude to
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8 Tai Yue, Trevor Laird and John Dillon for their thoughtful commentary and discussion throughout
9
10 this work. We also thank Silpa Sundaram and Dr. Susan Hershenson for fostering an ecosystem
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12
13
where difficult decisions can be made.
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15
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