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DNA Identification DVI
DNA Identification DVI
A R T I C L E I N F O A B S T R A C T
Article history:
Received 1 May 2018 In disaster victim identification (DVI), DNA profiling is considered to be one of the most reliable and
Accepted 27 May 2018 efficient means to identify bodies or separated body parts. This requires a post mortem DNA sample, and
Available online 4 June 2018 an ante mortem DNA sample of the presumed victim or their biological relative(s). Usually the collection
of an adequate ante mortem sample is technically simple, but the acquisition of a good quality post
Keywords: mortem sample under unfavourable DVI circumstances is complicated due to the variable degree of
Human identification preservation of the human remains and the high risk of DNA (cross) contamination. This paper provides
DNA sample the community with an efficient method to collect post-mortem DNA samples from muscle, bone, bone
MH17
marrow and teeth, with a minimal risk of contamination. Our method has been applied in a recent,
Mass disaster
challenging DVI operation (i.e. the identification of the 298 victims of the MH17 airplane crash in 2014).
Forensic
Contamination 98,2% of the collected PM samples provided the DVI team with highly informative DNA genotyping
DVI results without the risk of contamination and consequent mistyping the victim’s DNA. Moreover, the
method is easy, cheap and quick. This paper provides the DVI community with a step-wise instructions
with recommendations for the type of tissue to be sampled and the site of excision (preferably the upper
leg). Although initially designed for DVI purposes, the method is also suited for the identification of
individual victims.
© 2018 Elsevier B.V. All rights reserved.
https://doi.org/10.1016/j.forsciint.2018.05.044
0379-0738/© 2018 Elsevier B.V. All rights reserved.
254 H.H. de Boer et al. / Forensic Science International 289 (2018) 253–259
the rib, femur and teeth for the DNA analysis in disaster victim Abbreviations: TPI: teeth per inch.
identification’ [14]. Experience has shown that their method is
easy and cheap, while it minimizes the risk of contamination and
provides excellent DNA profiling results. It is the method of choice
of the Dutch DVI team and has been repeatedly applied, for 3.2. Preparing the DNA decontamination fluid
instance at the 2004/5 south–east Asian tsunami disaster, the
Benzdorp airplane crash in Surinam in 2008, the Afriqiyah Airways Prepare sufficient DNA decontamination fluid (according to
airplane disaster in Tripoli in 2010 and in many forensic cases Westen et al. [14]) to fill the rectangular container and the large
involving only one or few casualties. However, due to lessons plastic bucket. For this, mix 1 ml of liquid soap/detergent per litre
learned from morgue experience over the last eight years with of tap water and chlorine up to a concentration of ca. 0.5% [19,20].
respect to sample selection, tissue collection techniques and Chlorine tablets usually contain approximately 90% chlorine and
downstream processing improvements, the initial description of household bleach approximately 5%. Practise has shown that if the
Westen et al. needs essential updating. composition of the mixture varies to a slight degree, the DNA
This article provides a new step-wise manual for adequate post cleaning fluid will stay effective for the DNA decontamination of
mortem sampling of human tissue for comparative DNA analysis, any surface, instrument and specimen.
even in case of severely decomposed, damaged, burnt, skeletonised
and/or intermingled human remains. Many tissues have been 3.3. Setting up the working station
suggested for this purpose (e.g. Refs. [15–18]), but for reasons of
availability the method focuses on muscle tissue, bone tissue, bone In the hectic environment of a DVI mortuary, a separate ‘stand-
marrow and teeth. The performance of the method will be alone’ working station minimizes the risk of contamination. A
illustrated by the results of the last large-scale DVI operation in typical station would consist of an autopsy table with drainage,
which it was deployed: the identification of the 298 victims of the warm and cold water taps, and a separate table to station the tools,
MH17 airplane crash in Ukraine in 2014. the necessary fluids and the DNA storage containers.
Fill the plastic bucket and the rectangular container with DNA
2. Materials cleaning fluid. Clean the surgical scalpel, hacksaw, chisel and
tweezers inside the bucket by means of nailbrush and/or sponge.
The sampling method only requires regular medical equipment, Keep the nailbrush and the sponge in the bucket and store the
and tools and chemicals that can be easily acquired from a local cleaned tools, ready for use, submerged in the rectangular
hardware store (see Table 1), which makes the method as container (Fig. 1). Storing them submerged and cleaning each
accessible as possible. instrument directly after use, minimizes the risk of contamination.
Fill the wash bottle with alcohol 99.9% and close its lid. Make
3. The procedure sure that the sterile plastic DNA sample containers and sterile
tubed swabs are within reach.
3.1. General directives
3.4. Procedure in case of relative intact bodies or body parts
A single individual should be able to perform the method,
though assistance from a colleague is helpful. Always: Relative intact bodies allow for the sampling of muscle tissue,
bone tissue, bone marrow and teeth. For the selection of excision
- Wear protective clothing (e.g. disposable coverall, hair net, face site, see the discussion (Section 6). In the following step by step
mask or gas mask, disposable plastic surgical gloves and a plastic manual the thigh will stand as an example for all other selected
apron). It provides protection to the examiner and reduces the risk body parts, except for the teeth. For the sampling of teeth see
of DNA contamination of the excised samples by the examiner. Section 3.6.
- Work as if in a surgical operating theatre, namelyas clean as possible. Step 1: Clean the skin of the thigh with tap water and a sponge.
- Immediately abort the process and take appropriate cleaning If necessary, use some detergent.
measures in case of suspected DNA-contamination. Never clean Step 2: Make sure that the thigh is mechanically in a stable
a potentially contaminated tissue sample. Take a new one. position and somewhat lifted from the table surface. The latter can
H.H. de Boer et al. / Forensic Science International 289 (2018) 253–259 255
Fig. 1. The tools that are used for taking the DNA samples are stored in a shallow plastic container and submerged in DNA cleaning fluid.
be achieved by supporting the distal part of the extremity with the bone and folding it laterally or medially (Fig. 2b). Longitudinal
some kind of makeshift strut. cuts into the muscle tissue of the skin-muscle flap will prevent it
Step 3: Clean the skin surface for a second time, now using the from folding back (Fig. 2c).
DNA cleaning fluid and the sponge from the plastic bucket. Step 7: Take with the tweezers and the scalpel a DNA sample from
Step 4: Make with the scalpel a superficial U-shaped cut (only a the (deep) muscle tissue directly adjacent to the bone (5–10 g).
few millimetres deep) covering the site of DNA excision. The cut Step 8: Holding the excised tissue with the tweezers, rinse it for
representing the basis of the U-shape should be made parallel to a few seconds under running tap water. Subsequently dip it for a
the longitudinal axis of the thigh and a little over halfway down few seconds in the DNA cleaning fluid to eliminate any surface
one of the sides of the thigh. The two parallel cuts representing the contamination, and give it a last quick rinse with tap water, to
‘legs’ of the U-shape should be made perpendicular to the remove any remaining DNA cleaning fluid.
longitudinal axis of the thigh, at least ten centimetres at a Step 9: Dehydrate the DNA sample surface by washing it with some
distance, and extend over the top to about a little over halfway alcohol 99.9% by means of the wash bottle, and let it become more or
down the opposite side of the thigh (Fig. 2a). less air dry in few seconds. Do not hasten the drying process by waving
Step 5: Clean the scalpel with DNA cleaning fluid and clean/ it around. Close the container with alcohol 99.9% directly after use.
rinse the superficial cut by squeezing DNA cleaning fluid from a Step 10: Store the tissue sample in a labelled sterile plastic
soaked sponge. container. Keep it out of direct light and cool (in a freezer, a
Step 6: Deepen all three cuts until one reaches the bone surface. refrigerator or in a bucket with melting ice cubes) until a DNA
Expose the bone surface by dissecting the skin-muscle flap from profiling laboratory processes it.
Fig. 2. Dissection method to expose the bone tissue and adjacent muscle tissue. (a) The skin is incised by a U-shaped cut that only reaches into the superficial subcutaneous
fat. The cut representing the basis of the U-shape runs parallel to the longitudinal axis of the thigh and a little over halfway down on the lateral or medial side of the thigh. The
two parallel cuts representing the ‘legs’ of the U-shape are made perpendicular to the longitudinal axis of the thigh, and extend over the top to about a little over halfway down
the opposite side of the thigh. (b) After decontaminating the knife and the superficial cut with DNA-cleaning fluid, the cuts are deepened till it reaches the bone surface. (c) The
bone surface of the femur is exposed by separating the skin-muscle flap from the bone and folding it laterally or medially. Longitudinal cuts in the skin-muscle flap will
prevent it from folding back.
Please note that the depicted body part is from the body donation programme of the Dept. of Medical Biology of the Academic Medical Centre in Amsterdam, and is unrelated
to the MH17 airplane crash.
256 H.H. de Boer et al. / Forensic Science International 289 (2018) 253–259
Step 11: If necessary to prevent the hacksaw from touching 3.5. Procedure in case of decomposed/damaged, skeletonised and/or
any possibly DNA contaminated soft tissue surfaces, deepen intermingled body parts
the longitudinal cuts in the muscle tissue of the skin-muscle
flap. Scrape the periosteum from the bone tissue surface with Decomposing or damaged muscle tissue should only be
the scalpel, as this may clog the saw teeth during the next step. sampled if covered by a large protective flap of undamaged skin.
Step 12: With the hacksaw, make a transverse cut into the bone Anatomically, the sample should be taken from as deep as possible,
shaft of approximately 2/3 of the thickness of the bone (Fig. 3a). A and should always be accompanied by bone tissue samples. The
full transverse cut will unnecessarily destabilize the limb. At bone sample is a backup sample in case the tissue sample fails to
approximately 1 cm proximal and distal from the initial cut, make yield an informative DNA profile. Apply the procedure as described
two oblique saw cuts that meet the first cut at its lowest point in Section 3.4.
(Fig. 3b). This creates two wedges of cortical bone tissue and an Decomposing or damaged skeletonized tissue (bone) should be
opening to the bone marrow cavity. Extract the wedges using the sampled according to its physical status as listed in Table 2. The
tweezers and, if necessary, the chisel (Fig. 3c). Process each wedge table shows that the excision strategy depends on the amount of
separately as described in steps 8 to 10. bone tissue available for excision. With respect to the size/weight
Step 13: Clean the hacksaw. The bone dust that tends to lodge limit of the sample feasible for DNA profiling, one should consult
between the teeth of the saw blade can be removed with a the DNA profiling laboratory in question. If possible, an accompa-
nailbrush at the bucket with DNA cleaning fluid. nying bone marrow swab should be taken.
Step 14: The removal of the bone tissue wedges has exposed the Step 1: Remove any remaining soft tissue and/or periosteum
bone marrow (cavity), which can now be sampled with a tubed dry from the bone tissue surface.
sterile swab (Fig. 3d). Store the bone marrow swab out of direct Step 2: Clean the bone tissue surface thoroughly with the
light and frozen or refrigerated. nailbrush and DNA cleaning fluid.
Step 15: Fold the skin-muscle flap in place, and close the Step 3: Harvest two samples in case of ‘Sample Category’ 1 and
excision site with post mortem needle and thread. 2, and the complete sample in case of ‘Sample Category’ 3. The use
Step 16: Ensure that all specimens are labelled appropriately of an easy-to-clean support, such as a hard plastic cutting board,
and that all necessary forms are completed, respectively entered will make the sawing easier.
into a digital data base. Clean the used instruments with DNA Step 4: Process the samples according to steps 8–10 in Section 3.4.
cleaning fluid and store them submerged in the container with the Step 5: If applicable, swab the exposed bone marrow with a
DNA cleaning fluid. sterile tubed swab.
Fig. 3. Excising the bone tissue samples and sampling the bone marrow. (a) The first saw cut in the bone shaft is made transversally, and reaches no further than
approximately 2/3 of the thickness of the bone. (b) Two oblique saw cuts meet the first cut at its lowest point, resulting in two wedges of mostly cortical bone tissue. (c) The
wedges are subsequently removed with the tweezers and, if needed, the chisel. The chisel is used to gently disconnect any remaining bone tissue bridge between the wedge
and the skeletal element. (d) After removal of the bone tissue wedges, the bone marrow is sampled by inserting a dry sterile swab into the marrow cavity.
The depicted body part is the same as shown in Fig. 2a–d, and is thus unrelated to the to the MH17 airplane crash.
H.H. de Boer et al. / Forensic Science International 289 (2018) 253–259 257
Table 2
Defined categories of tissue quality in case of decomposed/damaged skeletonised remains.
Cat. Description
1 Bone tissue of sufficient size and quality allowing for two DNA profiling samples, and for resampling if demanded.
2 Bone tissue of sufficient size and quality allowing for two DNA profiling samples only.
3 Bone tissue of sufficient size and quality allowing for only one DNA profiling sample.
4 Human tissue unfit for DNA profiling analysis, non-human tissue and non-biological material.
Step 6: Act conform step 16 of Section 3.4, and store the Table 3
remaining tissue for any resampling or eventual release after Performance of the ‘Dutch’ method at the MH17 DVI operation.
identification.
Number of taken and processed samples
contaminated DNA profiles are obtained from the first sampling 6.3. Sampling teeth
attempt. Unlike muscle and bone marrow samples, bone and teeth
samples can be decontaminated by sand blasting or submersion in To avoid loss of useful data, tooth extraction should be preceded
bleach. To save time DNA profiling laboratories might prefer to by forensic odontological consultation or analysis. Only healthy
start with the rapid processing procedure of muscle tissue or bone intact teeth with closed apexes [24], preferably multi-rooted teeth
marrow swabs, in the knowledge that back-up bone tissue samples or canines, are harvested as they have the largest DNA-containing
or tooth are readily available. pulp cavities. Sampling fully charred or calcined teeth is highly
ineffective [25].
6.1. Sampling site in case of relative intact bodies or body parts
7. Conclusion
In case of relative intact bodies or body parts, DNA samples are
preferably excised from the extremities. Especially the lower The presented method for the post mortem collection of
extremity is known for its ability to absorb mechanical trauma and samples of muscle and bone tissue, bone marrow and teeth for
to restrain temperature fluctuations by its soft tissue mass. In this DNA-analysis provides highly informative genotyping results, with
respect the upper extremity, especially the upper arm, is the a minimal risk of contamination during collection and sampling of
second best choice. If possible, avoid closed fractures, as they are the post mortem tissues. This is illustrated by the performance of
likely to cause excision difficulties. our method during the identification of the victims of the MH17
airplane crash in which 4958, mostly heavily damaged, decom-
6.2. Sampling site in case of decomposing/damaged or skeletonised posed and commingled body parts were sampled and analysed for
remains DNA. 98,2% of the collected PM samples provided the MH17 DVI
team with highly informative DNA genotyping results. The method
Substantially decomposed/damaged or skeletonised remains is quick, easy to learn and easy to use and requires only generally
are more likely to carry contaminated and/or degraded DNA. Body available, inexpensive instruments and consumables and can be
parts with lacerations, deep soft tissue wounds, open fractures or adapted in almost any DVI scenario. The method is also applicable
extensive thermal damage should therefore be avoided as much as outside a DVI context, e.g. in forensic identification cases with only
possible. one or several casualties.
Muscle tissue should only be sampled if covered by a large
protective flap of undamaged skin. Anatomically, the sample should Acknowledgements
be taken from as deep as possible, and should always be accompanied
by bone tissue samples. The latter restricts muscle tissue sampling to The authors thank the staff of the Dutch DVI team (Landelijk
those body parts that also permit bone tissue sampling. Team Forensische Opsporing, LTFO) and of the DNA laboratory of
Bone tissue samples are preferably taken from intact skeletal the Netherlands Forensic Institute (NFI). Photographer Eelco Roos
elements covered by a protective cuff of soft tissue. Samples from of the Dept. of Pathology of the Academic Medical Center (AMC) is
separated skeletal elements predominantly consisting of cortical acknowledged for the photographs.
bone tissue are traditionally preferred over those dominated by
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