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Chapter 4 Sb025 Answer Biocatalysis
Chapter 4 Sb025 Answer Biocatalysis
Chapter 4 Sb025 Answer Biocatalysis
4: BIOCATALYSIS
4: BIOCATALYSIS
OBJECTIVE QUESTIONS
1. What is cofactor?
2. Mg2+, Cl-, Zn2+, Fe2+, Cu2+ and Ca2+ are the examples for?
3. Molecule X is a non-protein molecule, and it is also a heavy metal. It will bind tightly to
the active site of an enzyme (becomes part of the enzyme). What is molecule X?
A. Coenzyme C. Inhibitor
B. Prosthetic group D. Substrate
4. The graph below shows the rates of reaction with and without inhibitors.
Rate of reaction
1 1
Curve
Curve 2
Curve 3
Substrate concentration
6. Which class of enzyme catalyzes the formation of bonds between two molecules using energy
derived from the hydrolysis of ATP?
A. Oxidoreductases C. Ligases
B. Hydrolases D. Transferases
8. A holoenzyme consists of
I. Substrate
II. Cofactor
III. Apoenzyme
10. The diagram below shows the graph for the rate of reaction against substrate concentration of an
enzyme.
Rate of Reaction
Substrate Concentration
A. simple enzyme
B. protein part of conjugate enzyme
C. organic cofactor of a conjugate enzyme
D. inorganic cofactor of a conjugate enzyme
12. Which one of the following statements regarding enzyme inhibition is CORRECT?
13. Some enzymes covalently bind a non-protein organic molecule to the active site. The
organic molecule concerned is required if the enzyme is to catalyze a reaction on a
substrate. What is the term used for such a molecule?
14. FIGURE 1 shows two types of enzyme inhibition, P and Q. Which one of the following
statements is/are CORRECT?
Inhibition Inhibition
P Q
FIGURE 1
A. I only
B. I and II only
C. II and III only
D. I, II and III
15. Which of the following are factor that caused the denaturation of enzyme?
I. Extreme pH
II. Competitive inhibitor
III. Heavy metal effects
IV. High temperature
Biology Answer Scheme SB025
4: BIOCATALYSIS
A. I and III
B. I and IV
C. I, II and IV
D. I, III and IV
16. Substrate concentration increases the rate of an enzymatic reaction up to a certain point,
but then has no further effect and the reaction rate levels off. This is because?
(d) What will happen to the rate of enzyme activity when the shape of enzyme’s
active site is altered? Give a reason. [2 marks]
- Decreases/ lowers // no reaction occurs
- The substrate cannot bind to active site // Enzyme-substrate complex is
not formed / the substrate is not complementary to active site
(e) Catecolase causes the browning of cut fruits like apples. An apple was bitten in
two areas; one area was exposed while another area was covered with lime juice.
Why had exposed area turned brown?
[2 marks]
- Catecolase / enzyme is active / not denatured / Enzyme reaction occurs
- Oxidation occurs / oxidize apple
(PSPM 2016/17)
FIGURE 2
(ii) Draw a line on the graph above if the temperature is increased starting at
point A. [1 mark]
(c) Briefly explain why high fever can be fatal to human beings? [2 marks]
● When high fever, high body temperature will denature the enzyme.
● Enzyme active site change in conformation, substrate cannot bind to
active site (of enzyme). Enzyme-catalyzed reaction does not occur.
(UPS 2009/10)
Biology Answer Scheme SB025
4: BIOCATALYSIS
FIGURE 3
(i) What is meant by an enzyme? [2 marks]
A biological catalyst that speed up the rate of reaction by lowering
activation energy
(iii) Explain how the active site of an enzyme can reduce the activation energy.
[2 marks]
- Bring substrate together into correct orientation / closer to each
other
- Facilitate breaking of old bond and formation of new bond between
substrate
(c) Malonate is the inhibitor for the enzyme succinate dehydrogenase. How would
you determine whether malonate is a competitive inhibitor or non-competitive
inhibitor? [2 marks]
● By increasing the substrate concentration.
Biology Answer Scheme SB025
4: BIOCATALYSIS
FIGURE 4
(ii) Which of the two molecules, R or S is more likely to be the substrate for
the given enzyme? Give your reason. [2 marks]
● R
Dependent
● The shape of molecule R is complementary / compatible with the
shape of active site of enzyme / T
(iii) Molecules P and Q inhibit the enzyme in different ways. State briefly
how each of the molecule inhibits the enzyme. [4 marks]
P:
● is non-competitive inhibitor / allosteric inhibitors
● binds to allosteric site of enzyme
Any TWO answers
● change the shape / conformation of the active site
● substrate can no longer bind to the active site
Q:
● is competitive inhibitor
● the shape is similar / partially same to the shape of substrate / R
● Q competes with R to bind to T // Q binds to T thus, prevents
substrate / R from binds to active site of enzyme
Any TWO answers
Biology Answer Scheme SB025
4: BIOCATALYSIS
(b) Why amylase is unable to catalyze the conversion of a protein into amino acids?
[2 marks]
● Due to specificity of the enzyme
● Active site has specific shape
● Active site is complementary to starch / starch causes induced fit
● Protein will not bind to active site / fit active site / cannot form
enzyme-substrate complex
Any TWO answers
(UPS 2012/13)
5. FIGURE 5 shows the effect of factor X and factor Y on the rate of enzymatic reaction.
FIGURE 5
FIGURE 5
(iii) What happen to the active site of enzyme at the point A to point B?
[1 mark]
All active sites are fully saturated with substrate
(iv) How do the kinetic energy of enzyme and substrate effects the reaction
rate at the point P to point Q? [3 marks]
● When the kinetic energy of enzyme and substrate increases
● The molecules move faster and more collisions occur
● The enzyme-substrate complexes are formed more frequently, the
rate of reaction increases
Biology Answer Scheme SB025
4: BIOCATALYSIS
(b) State the level of protein structure that forms enzymes. [1 mark]
Tertiary / Quaternary
6. (a) (i) Draw a graph showing rate of reaction with and without the presence of an
enzyme. [3 marks]
OR
Axis : 1 mark
Curve (with enzyme) + label : 1 mark
Curve (without enzyme) + label : 1 mark
Biology Answer Scheme SB025
4: BIOCATALYSIS
(iii)
How does an enzyme influence a biochemical reaction? [1 mark]
Lowering the activation energy
(PSPM 2008/2010)
7. FIGURE 6 shows an enzyme and a substrate action mechanism.
FIGURE 6
(b) Describe the events that occur when the substrate binds to the active site of enzyme.
[3 marks]
- The binding of the substrate induces the enzyme to change its shape slightly.
- This lead a better fit between the active site and the substrate.
- There is also a slight alteration to the shape of substrate.
(c) How does enzyme affect the activation energy of a reaction? [1 mark]
(d) What happens to the rate of reaction at the highest substrate concentration? [1 mark]
Competitive inhibition
Non-competitive inhibition
Biology Answer Scheme SB025
4: BIOCATALYSIS
(f) Give one (1) example of inhibitor for each type of reversible inhibition. [2 marks]
i. Oxidoreductase
ii. Catalyse the transfer of oxygen and hydrogen atoms between substrates / all
oxidation-reduction reactions / redox reactions.
iii. e.g. dehydrogenase / oxidase
iv. Transferase
v. Catalyse the transfer of a functional group from one substrate to another.
vi. e.g. transaminase / phosphorylase
vii. Hydrolase
viii. Catalyse the breakdown of chemical bond by adding water molecule.
ix. e.g. digestive enzymes: sucrose / protease / lipase
x. Lyase
xi. Catalyse the addition or removal of a chemical group.
xii. e.g. decarboxylase
xiii. Isomerase
xiv. Catalyse the rearrangement of functional group / atoms in a substrate
molecule.
Biology Answer Scheme SB025
4: BIOCATALYSIS
10. With the aid of a diagram, explain activation energy in relation to the function
of enzyme.
[10 marks]
i.
ii. Labels for free energy and progress of reaction/ X and Y axis
iii. Label for activation energy/EA curve with enzyme
iv. Label for activation energy curve without enzyme
v. Activation energy is the energy that must be absorbed by the substrate to
start a chemical reaction // minimum energy required to initiate / start a
chemical reaction
vi. Without enzyme more activation energy is required to start a chemical
reaction
vii. With enzyme the activation energy is lowered
viii. By bringing the substrate close to each other (into correct orientation)
ix. Facilitate the breaking of bonds
x. enabling the reactant molecules to absorb enough energy
xi. Transition state is reached
xii. Speed up the chemical reaction / the rate of reaction
(PSPM 2016/2017)
Biology Answer Scheme SB025
4: BIOCATALYSIS
11. Explain the mechanism of enzyme action using “induced fit” hypothesis with an aid of a
diagram. [10 marks]
(PSPM 2007/2008)
Substrate
Active site
Diagram:
i. Label the substrate and enzyme.
ii. Enzyme-substrate complex: show active site of enzyme changes shape.
iii. Products formed and enzyme change to original shape.
12. With the aid of diagram, discuss the effect of temperature on the enzymatic reaction.
[12 marks]
(Optimum temperature)
Axis –1
2/1/0
Graph – 1
Biology Answer Scheme SB025
4: BIOCATALYSIS
13. Describe how substrate concentration and pH affect the rate of enzyme-catalysed reaction.
[10 marks]
(PSPM 2007/2008)
Substrate concentration:
i. At low substrate concentration, rate of enzyme reaction increase with
increasing substrate concentration.
ii. The active site of an enzyme molecule can bind with a certain number of
substrate molecules at a given time.
iii. At high substrate concentration, there is saturation of active site // increasing
of substrate concentration has no effect on the rate of reaction
iv. The rate of reaction reaches the maximum
pH effect:
i. Most enzymes are effective only within a narrow pH range.
ii. Maximum rate of reaction occurs at optimum pH.
iii. Different enzymes have different optimum pH.
iv. Deviation from optimum pH range results in excess H+ / OH- ions in the
medium.
Biology Answer Scheme SB025
4: BIOCATALYSIS
v. That alters the charge/ acidic / basic / functional groups / side chains (of amino
acids) in the enzyme.
vi. Causing the hydrogen bonds / ionic bond to be broken.
vii. Change the conformation of the active site // denaturation occurs.
viii. Substrate cannot fit into the active site (to form enzyme substrate complex).
ix. Lower down the rate of reaction.
ix. Cofactors
x. Non protein molecule needed for enzyme to function effectively
FIGURE 7
Biology Answer Scheme SB025
4: BIOCATALYSIS
(d) Give TWO factors which prevent the production of R and S. [2 marks]
● Extreme temperature // very high / low temperature
● Extreme pH / too acidic / too basic
● Presence of inhibitor
Any TWO answers
(e) (i) State the condition during which an enzyme is saturated. [1 mark]
When active sites are fully filled / occupied / bound with substrate
16. Briefly discuss the types of cofactor with appropriate examples. [8 marks]
(PSPM 2013/2014)
Definition:
i. A non-protein component of an enzyme.
ii. Required for efficiency of enzymatic reaction.
iii. May bind tightly or loosely to the enzyme.
Biology Answer Scheme SB025
4: BIOCATALYSIS
Three types:
vi. Coenzyme
vii. Non-protein organic molecules
viii. Derivatives of vitamin that binds loosely / temporarily to the enzyme.
ix. Act as carrier of hydrogen atoms, electrons of molecules.
x. (Examples: NAD+/NADP+/Coenzyme A/ ATP)
4.3 INHIBITORS
17. FIGURE 8 shows the relationship between substrate concentration and the rate of
enzyme-catalyzed reaction under three different conditions.
FIGURE 8
Biology Answer Scheme SB025
4: BIOCATALYSIS
(i) State the correct label for the following reactions. [3 marks]
(ii) Name the region of enzyme where the non-competitive inhibitor binds.
[1 mark]
Allosteric site
(UPS 2007/08)
FIGURE 9
(b) Give ONE example for both inhibitor I and II. [2 marks]
(c) With the present of inhibitor I, explain what happen to the rate of enzyme reaction.
[2 marks]
● Decreases / reduces
● inhibitor I prevents the substrate from binding to enzyme active site
Biology Answer Scheme SB025
4: BIOCATALYSIS
(d) Suggest how the effect of inhibitor I can be reduced in order to increase the rate
of enzyme reaction. [1 mark]
FIGURE 10
(a) State the type of inhibitor in I and J. Give a reason for your answer. [4 marks]
(b) (i) Explain what happens to the rate of reaction in the presence of the
inhibitor I. [2 marks]
20. FIGURE 11 shows three different enzyme reaction, A and B represent two types of
inhibitors.
FIGURE 11
(d) What happens to the rate of reactions with inhibitors A and B if the substrate
concentration is increased? [2 marks]
A : increase
B : unchanged / no changes / remains the same
(e) Draw a curve to show the effect of increasing the temperature to enzymes activity.
[2 marks]
Peak of curve
(35ºC - 45ºC) : 1 mark
(f) State the level of protein structure that form enzyme. [1 mark]
Tertiary / Quaternary structure level
(PSPM 2006/07)
21. FIGURE 12 shows an enzyme action.
FIGURE 12
(ii)Structure H can bind to G site. What is H and how does it affect the rate
of reaction? [3 marks]
● H is non-competitive inhibitor
● When H binds to G, conformation of F changes // substrate cannot
bind to F / cannot fit to F
● Rate of reaction is decreased
(PSPM 2011/12)
22. FIGURE 13 shows the curves for enzymatic reactions.
FIGURE 13
Biology Answer Scheme SB025
4: BIOCATALYSIS
(b) Briefly explain the enzyme activities for curves Q and R. [4 marks]
Q : Competitive inhibitor and substrate compete for the same active site
of the enzyme.
Rate of reaction decrease // Maximum rate of reaction reached when
more substrate added.
R : Non-competitive inhibitor and substrate bind to different sites/ on
the enzyme
Rate of reaction decreases.
(c) Which curve shows an inhibition that could not be recovered by the addition of
more substrate? [1 mark]
(Curve) R
(d) Digestion of lipid occurs in small intestine and is catalyzed by lipase. Briefly
explain the consequence of eating oranges to the digestion of lipid in the small
intestine. [2 marks]
- Lipase needs alkaline medium // orange create acidic medium in the small
intestine
- Lipase is not active/ slows down the digestion / hydrolysis of lipid //
Digestion of lipid in small intestine is not affected, pancreatic juice
neutralizes stomach acid in small intestine.
(PSPM 2016/17)
Biology Answer Scheme SB025
4: BIOCATALYSIS
23. FIGURE 14 shows the effect of two different chemicals on the activity of enzyme A.
The temperature, pH and enzyme concentration were kept constant during this
experiment.
FIGURE 14
(d) Does increasing the concentration of substrate overcome the effect of chemical B
towards activity of enzyme A? Why?
[2 marks]
Yes
The probability of an enzyme-substrate collision is higher // the substrates have
greater chance of binding to the active sites
24. FIGURE 15 shows two different types of inhibitors X and Y when compared to normal
enzyme.
FIGURE 15
25. Using isoleucine as an example, explain how a non-competitive inhibitor affects enzyme
activity. [5 marks]