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4 HardyWeinberg410-2020
4 HardyWeinberg410-2020
4 HardyWeinberg410-2020
Gregor Mendel
Wilhem Weinberg
(1822-1884) (1862 – 1937)
G. H. Hardy
(1877 - 1947)
Lectures 4-12: Mechanisms of Evolution
(Microevolution)
• Hardy Weinberg Principle (Mendelian Inheritance)
• Genetic Drift
• Mutation
• Sex: Recombination and Random Mating
• Epigenetic Inheritance
• Natural Selection
These are mechanisms acting WITHIN populations,
hence called “population genetics”—EXCEPT for
epigenetic modifications, which act on individuals
in a Lamarckian manner
Recall from Previous Lectures
Darwin’s Observation
Gregor Mendel
Jeremy Irons
playing GH Hardy in
the film “The Man
Who Knew Infinity” ↓
Wilhem Weinberg
Godfrey H. Hardy (1862 – 1937)
(1877-1947) German obstetrician-gynecologist
English Mathematician
Testing for Hardy-Weinberg equilibrium can
be used to assess whether a population is
evolving
The Hardy-Weinberg Principle
• Genetic Drift
• Natural Selection
• Mutation
• Migration
*Epigenetic modifications change expression of alleles but not
the frequency of alleles themselves, so they won’t affect the
actual inheritance of alleles
However, if you count the phenotype frequencies, and not the
genotype frequencies , you might see phenotypic frequencies
out of HW Equilibrium due to epigenetic silencing of alleles.
(epigenetic modifications can change phenotype, not genotype)
Requirements of HW Evolution
Violation
No Mutations Mutations
No Migration Migration
MAP
CANADA
AREA
ALASKA
Beaufort Sea
•What is a “population?”
NO RRIT
TE
RT OR
HW IE
A group of individuals within
ES S
Porcupine
T
a species that is capable of herd range
interbreeding and producing
fertile offspring
Fortymile
herd range
YUKON
ALASK A
In the absence of Evolution…
AA Aa aa
Generation 1 0.25 0.50 0.25
Generation 2 0.20 0.60 0.20
Generation 3 0.10 0.80 0.10
Hardy-Weinberg Theorem
In a non-evolving population,
frequency of alleles and genotypes
remain constant over generations
A1
A1
Random Mating (Sex)
A1A1 A1A1
Zygotes
A1A3
A1A1
• Genotypes A2A4
A3A1
A2 A1
Eggs
A1 A3 A2
A1
A4
So then can we A2
A3 A1
predict the expected Sperm
A4
% of alleles and A1 A1
genotypes in the
population at each
generation? Zygotes
A1A1 A1A1
A1A3
A1A1
A2A4
A3A1
Hardy-Weinberg Theorem
In a non-evolving population,
frequency of alleles and genotypes
remain constant over generations
Fig. 23-6
q = frequency of
CW allele = 0.2 80% 20% 80% 20%
chance chance chance chance
– For example, p + q = 1
If p and q represent the relative frequencies of the
only two possible alleles in a population at a
particular locus, then for a diploid organism (2
chromosomes),
(p + q) 2 = 1
= p2 + 2pq + q2 = 1
– where p2 and q2 represent the frequencies of the
homozygous genotypes and 2pq represents the
frequency of the heterozygous genotype
What about for a triploid organism?
What about for a triploid organism?
• (p + q)3 = 1
= p3 + 3p2q + 3pq2 + q3 = 1
GENOTYPES
AA: p x p = p2
Aa: p x q + q x p = 2pq
aa: q x q = q2
p2 + 2pq + q2 = 1
More General HW Equations
• One locus three alleles: (p + q + r)2 = p2 + q2 + r2 + 2pq +2pr +
2qr
• If multiple loci (genes) code for a trait, each locus follows the
HW principle independently, and then the alleles at each loci
contribute to and/or interact to influence the trait
Calculating allele frequencies
We can then define the relative frequencies of A1A1 and A1A2
genotypes as:
p2 + 2pq + q2
Allele frequencies remain the same at
next generation = 0.64 + 0.32 + 0.04 = 1
Expected Allele Frequencies at 2nd Generation
p = AA + Aa/2 = 0.64 + (0.32/2) = 0.8
q = aa + Aa/2 = 0.04 + (0.32/2) = 0.2
Hardy Weinberg Theorem
ALLELE Frequency
Frequency of A = p = 0.8 p+q=1
Frequency of a = q = 0.2
p q
p2
2pq
q2
Calculating Allele Frequencies from # of Individuals
EVOLUTION
Is happening
Hardy-Weinberg across a Genome
AA Aa aa
Generation 1 0.25 0.50 0.25
Generation 2 0.20 0.60 0.20
Generation 3 0.10 0.80 0.10
AA Aa aa
Generation 1 0.25 0.50 0.25
Generation 2 0.20 0.60 0.20
Generation 3 0.10 0.80 0.10
AA Aa aa
Generation 1 0.25 0.50 0.25
Generation 2 0.24.5 0.50 0.25.5
Generation 3 0.25 0.50.5 0.24.5
Testing for Deviaton from Hardy-
Weinberg Expectations
• A c2 goodness-of-fit test can be used to determine if a
population is significantly different from the expectations of
Hardy-Weinberg equilibrium.
• If we have a series of genotype counts from a population,
then we can compare these counts to the ones predicted by
the Hardy-Weinberg model.
• O = observed counts, E = expected counts, sum across
genotypes
Example
• Genotype Count: AA 30 Aa 55 aa 15
• Calculate the c2 value:
Genotype Observed Expected (O-E)2/E
AA 30 33 0.27
Aa 55 49 0.73
aa 15 18 0.50
Total 100 100 1.50
• Since c2 = 1.50 < 3.841 (from Chi-square table, alpha = 0.05),
we conclude that the genotype frequencies in this population
are not significantly different than what would be expected if
the population is in Hardy-Weinberg equilibrium.
Testing for Deviaton from Hardy-
Weinberg Expectations
• A c2 goodness-of-fit test can be used to determine if a
population is significantly different from the expectations of
Hardy-Weinberg equilibrium.
• If we have a series of genotype counts from a population,
then we can compare these counts to the ones predicted by
the Hardy-Weinberg model.
• O = observed counts, E = expected counts, sum across
genotypes
56
Testing for Deviaton from Hardy-Weinberg Expectations
• O = observed counts, E = expected counts, sum across
genotypes
Degrees of Freedom
is n – 1
= 2 alleles (p, q) -1 =
1
60
Testing for significance
• The results come out not significantly different from HW
equilibrium
• This does not necessarily mean that genetic drift (or
some other evolutionary force) is not happening, but
that we cannot conclude that genetic drift is happening
• Either we do not have enough power (not enough data,
small sample size), or genetic drift is not happening
• Sometimes it is difficult to test whether evolution is
happening, even when it is happening... The signal
needs to be sufficiently large to be sure that you can’t
get the results by chance (like by sampling error)
61
Test for Deviation from HW equilibrium
• Genotype Count Generation 4 à increase sample size
AA 65000 Aa 31000 aa 4000
• Calculate the c2 value:
Genotype Observed Expected (O-E)2/E
AA 65000 64800 0.617
Aa 31000 31400 5.10
aa 4000 3800 10.32
Total 100,000 100,000 16.04
• Since c2 = 16.04 > 3.841 (from Chi-square table for critical values,
alpha = 0.05), we conclude that the genotype frequencies in this
population ARE significantly different than what would be
expected if the population were in Hardy-Weinberg equilibrium. 62
Test for Significance of Deviation from HW Equilibrium
Degrees of Freedom
is n – 1
= 2 alleles (p, q) -1 =
1
63
• One generation of Random Mating could put a
population back into Hardy Weinberg
Equilibrium
Examples of Deviation from
Hardy-Weinberg Equilibrium
What would Genetic Drift look
like?
• Most populations are experiencing some level
of genetic drift, unless they are incredibly
large
Examples of Deviation from
Hardy-Weinberg Equilibrium
AA Aa aa
Generation 1 0.64 0.32 0.04
Generation 2 0.63 0.33 0.04
Generation 3 0.64 0.315 0.045
Generation 4 0.65 0.31 0.04
AA Aa aa
0.64 0.36 0
AA Aa aa
0.64 0.36 0
AA Aa aa
0.25 0.70 0.05
AA Aa aa
0.25 0.70 0.05
AA Aa aa
0.10 0.10 0.80
AA Aa aa
0.10 0.10 0.80
Gregor Mendel
Wilhem Weinberg
(1822-1884) (1862 – 1937)
G. H. Hardy
(1877 - 1947)
Fig. 23-7-4
80% CR ( p = 0.8) 20% CW (q = 0.2)
Sperm
CR CW
(80%) (20%)
Perform the same
calculations using
(80%)
CR
percentages
Eggs
CR CW CW CW
Sperm
CR CW
(80%) (20%)
(80%)
CR
Eggs
CR CW CW CW
Fig. 23-7-2
(A) 1/4
(B) 1/3
(C) 1/2
(D) 3/4
(E) zero
The following are numbers of pink and white flowers in a population.
Pink White
Generation 1: 901 302
Generation 2: 1204 403
Generation 3: 1510 504
(A) Generation1: Dominant allele (A1) = 0.6, Recessive allele (A2) = 0.4
Generation2: Dominant allele = 0.4, Recessive allele = 0.6
Generation3: Dominant allele = 0.125, Recessive allele = 0.875
(A) Mutation
(B) Selection favoring A1
(C) Heterozygote advantage
(D) Selection favoring A2
(E) Inbreeding
Answers: