TP53 Mutations Upregulate RCP Expression Via Sp1/3 To Drive Lung Cancer Progression

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Oncogene www.nature.

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ARTICLE
TP53 mutations upregulate RCP expression via Sp1/3 to drive
lung cancer progression
2,3,4 ✉
Caihong Wang1,2,3,4,6, Shaosen Zhang2,3,4,5,6, Boyuan Ma2,3,4, Yan Fu2,3,4 and Yongzhang Luo

© The Author(s), under exclusive licence to Springer Nature Limited 2022

Mutant p53 (mtp53) can exert cancer-promoting activities via “gain-of-function”, which has become a popular research target.
Although lots of researchers focus on the tumor-suppressor role for p53, the regulation of mutant p53 remains unknown. Here, we
report a mechanism by which mtp53 regulate the transcription of Rab coupling protein (RCP) to influence lung cancer behavior.
First, we show that RCP is specifically expressed at high levels in lung cancer tissues and cells, and RCP knockout suppresses tumor
growth and metastasis. Further mass spectrometry and functional analysis identify that Sp1, Sp3 and Stat3 are the transcriptional
activators of RCP. Moreover, p53 is involved in modulating RCP expression in an Sp1/3 dependent manner. Mechanistically, in
contrast to wild-type p53 suppression of RCP transcription by decreasing Sp1/3 proteins, TP53 mutations have changed on Sp1/3
expression via “loss-of-function”. Surprisingly, the DNA contact mutants of p53 further robustly enhance their binding ability with
Sp1/3 to drive RCP expression through the “gain-of-function” activity. Collectively, we reveal a mechanism by which p53 regulating
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the transcription of RCP to influence lung cancer progression, which provides new insights for treating p53 mutant lung cancer.

Oncogene (2022) 41:2357–2371; https://doi.org/10.1038/s41388-022-02260-7

INTRODUCTION Accumulating studies reported oncogenic properties of RCP in


Lung cancer is the first leading cause of cancer-related mortality promoting multiple tumor-associated processes [11–16]. RCP has
around the world [1]. Patients with lung cancer are often been reported to drive integrin β1 [17–19], EGFR [20, 21],
diagnosed with advanced stages of disease, associated with N-cadherin [22] and TfR1 [23] to transmit oncogenic signals.
frequent metastases and a poor 5-year survival rate of about However, the oncogenic properties of RCP in lung cancer remains
4–17% [2]. Cancer development is a multi-step pathogenesis, and unclear.
the progressive accumulation of genetic and epigenetic altera- Lung cancer development mainly depends on genetic abnorm-
tions invariably lead to dysregulated transcriptional programs. alities. As one of the most important tumor suppressor genes,
These dysregulated programs drive tumor malignant progression TP53 is frequently mutated in lung cancer. A recent study
by increasing tumor growth and invasiveness. In recent years, identified that 90% of small cell lung cancer cases containing
gene-expression patterns, copy number alterations have been TP53 mutation [24]. p53 has been reported to regulate cell cycle,
revealed playing pathological roles in human cancers [3]. The cell division, DNA damage repair, and apoptosis [25]. As a
magnitude and frequency of transcriptional reprogramming were canonical tumor suppressor, p53 is often inactivated because of
reported to be closely associated with clinical features of human missense mutations [26]. These missense mutations can lose p53’s
cancers [4]. It is known as transcriptional addiction, which reveals tumor suppressor functions that exhibits loss-of-function (LOF)
vulnerable points in cancer therapy. Tumor progression depends activities [27]. However, some of them can generate oncogenic
on the aberrant activity of dysregulated transcriptional programs. mutant p53 proteins to promote tumor malignancy that exhibits
Therefore, disrupting these reprogramming pathways is generally gain-of-function (GOF) activities [28–30]. Moreover, mutant p53
sufficient to induce growth arrest and reprogram malignant can cause the amplification of oncogenes [31, 32]. For instance,
cancer cells toward benign phenotype. mutant p53 can promote tumor progression by binding to and
RCP belongs to a member of the class I Rab11 family of upregulating chromatin regulatory genes, like MLL1, MLL2, leading
interacting proteins (Rab11-FIP1) [5]. RAB11FIP1 is located within a to genome-wide increases of histones methylation and acetylation
genomic region (8p11-12), which is usually amplified in breast [33]. Moreover, mutant p53 can accelerate the recycling of integrin
cancer [6]. RCP is upregulated in estrogen receptor (ER) positive beta1 and EGFR to exert its oncogenic function, which is RCP-
cancer and function as an oncoprotein to enhance tumor dependent [21]. Previous data also suggest that mutant p53
progression [7]. Except that, the elevated level of RCP expression exhibits GOF activities in an RCP/WIP/YAP signaling axis [34]. In
was reported in head and neck squamous cell carcinoma [8], colon addition, RCP was reported to promote epithelial-mesenchymal
cancers [9] and non-small cell lung carcinoma (NSCLC) [10]. transition in a mutant p53 dependent manner [35]. These reports

1
Beijing Institute of Tropical Medicine, Beijing Friendship Hospital, Capital Medical University, Beijing 100050, China. 2School of Life Sciences, Tsinghua University, Beijing 100084,
China. 3The National Engineering Research Center for Protein Technology, Tsinghua University, Beijing 100084, China. 4Beijing Key Laboratory for Protein Therapeutics, Tsinghua
University, Beijing 100084, China. 5Department of Etiology and Carcinogenesis, National Cancer Center/Cancer Hospital, Chinese Academy of Medical Sciences and Peking Union
Medical College, Beijing 100021, China. 6These authors contributed equally: Caihong Wang, Shaosen Zhang. ✉email: yluo@tsinghua.edu.cn

Received: 14 November 2021 Revised: 11 February 2022 Accepted: 18 February 2022


Published online: 7 March 2022
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Fig. 1 RCP is highly expressed in human lung cancer. A RCP protein levels in lung normal epithelial cells (BEAS-2B), lung normal fibroblast
(MRC-5) and lung cancer cells (A549, H1299, H157, H358, H441, H460, H520) were analyzed by western blot (WB). The amount was quantified
and normalized to the BEAS-2B cells. Representative results from three independent experiments are presented. B Representative images
(top) and relative intensity (bottom) showing RCP protein levels in lung normal tissues and lung cancer tissues. Scale bars, 500 μm. Raw RCP
immunohistochemistry image panels from The Human Protein Atlas (https://www.proteinatlas.org/ENSG00000156675 RAB11FIP1/pathology/
lung+cancer#img). C Representative images showing RCP protein levels in healthy people, benign and malignant lung cancer samples, and
correlation analysis of RCP immunohistochemistry scores with tumor malignancy (chi-square test). Scale bars, 500 μm (top) and 100 μm
(bottom). Data are represented as mean ± SD. ***p < 0.001. A One-way analysis of variance (ANOVA) followed by Dunnett’s multiple
comparisons. B Two-tailed Student’s t-tests. C Chi-square test.
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suggest the critical role of RCP in the GOF of mutant p53. the expression and roles of RCP in lung cancer at first. DNA probe
However, whether p53 involved in regulation of RCP expression is pulldown assays and mass spectrometry profiling were done to
still unclear. identify the upstream regulators of RCP. We further explore the
One of our previous works has demonstrated that mutant p53 underlying molecular mechanisms by which p53 involving in
drives cancer metastasis via RCP mediated exosome associated regulation of RCP expression through chromatin immunoprecipi-
Hsp90alpha secretion [13]. In the current study, we determined tation, immunofluorescence and co-immunoprecipitation

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Fig. 2 RCP Drives Lung Cancer Cell Proliferation and Invasion in vitro. A Levels of cell surface EGFR and integrin β1 upon plasma membrane
(PM) from H1299 and H460 cells with or without RCP expression were detected by WB. RCP was knocked out by CRISPR/cas9 system, and
recovered by exogenous RCP overexpression vectors. The amount of EGFR and integrin β1 upon PM was quantified and normalized to the NC
group. Representative results from three independent experiments are presented. B The cell proliferation of H1299 and H460 with or without
RCP expression was measured using the cell counting kit 8 (CCk-8) at 24 h and 48 h. C Colony formation ability of H1299 and H460 cells with or
without RCP expression. Representative images (top) and quantitative numbers of colonies in six-well plates (bottom). Representative results
from three independent experiments are presented. Scale bar, 1 cm. D Invasion capability of H1299 and H460 cells with or without RCP
expression. Representative images (top) and quantitative numbers of invaded cancer cells per view (bottom). Scale bars, 200 μm. E Levels of
EGFR and integrin β1 upon plasma membrane (PM) from RCP overexpressed in BEAS-2B cells were analyzed by WB. F The cell proliferation of
BEAS-2B with RCP overexpression or empty vector control was measured using the cell counting kit 8 (CCk-8) at 24 h and 48 h. G, H Colony
formation (G) and invasion (H) capability of BEAS-2B cells with RCP overexpression or empty vector control. Quantitative numbers of colonies
(G, top) and representative images (G, bottom) in six-well plates. Scale bar, 1 cm. Quantitative numbers of invaded cells per view (H, left) and
representative images (H, right), representative results from three independent experiments are presented. Scale bars, 200 μm. Data are
represented as mean ± SD calculated from three independent experiments and each had four technical replicates. *p < 0.05; **p < 0.01; ***p <
0.001; ****p < 0.0001 and ns, not significant. Two-tailed Student’s t-tests (F, G, and H), one-way analysis of variance (ANOVA) followed by
Dunnett’s multiple comparisons (B, C, and D).

experiments. Our results showed that high expression of RCP toward the pseudopodium sites of cell migration (Fig. S1B).
enhanced lung cancer progression. Sp1, Sp3 and Stat3 are These results indicate that the sustained expression of RCP is
identified as transcription activators of RCP. And mutations in required to maintain high levels of membrane-associated
TP53 upregulate RCP expression in different manners, which are integrin β1 and EGFR.
Sp1/3 dependent. Collectively, these findings verify that mutant Next, we speculated that upregulated RCP might promote the
p53 transcriptional upregulated RCP to drive aggressive lung proliferation and invasion of lung cancer cells. As shown in Fig. 2B,
cancer behavior, which provide new insights for the biological C, S1D, E, RCP knockout or knockdown significantly inhibited the
networks underlying lung cancer pathogenesis. proliferation rate and growth of H1299, H460 and A549 cells. Re-
expression of RCP rescues the proliferation and cell growth ability
in these cells (Fig. 2B, C). Similarly, downregulation of RCP
RESULTS dramatically inhibited lung cancer cell invasion (Fig. 2D and S1F),
RCP is highly expressed in human lung cancer while the invasion capability was significantly enhanced with
To explore the roles of RCP in lung cancer, we first detected the upregulated RCP. Except that, overexpression of RCP in normal
relative RCP levels in human lung cancer cell lines (A549, H1299, human lung epithelial BEAS-2B cells resulted in acquisition of
H157, H358, H441, H460 and H520) and noncancerous cell lines tumorigenic properties such as enhanced cell growth and invasion
(BEAS-2B and MRC-5) from lung tissue. Compared with non- (Fig. 2E, H). Taken together, our observations suggest that RCP
cancerous cells, the expression of RCP was significantly increased drives lung cancer cell proliferation and invasion.
in all lung cancer cell lines (Fig. 1A). In clinically, RCP protein levels
in tumor tissue sections are higher than in peritumoral and normal RCP drives lung cancer tumor growth and metastasis in vivo
lung tissues (The Human Protein Atlas, RCP expression in lung Our experimental observations strongly suggested that upregu-
tissue) (Fig. 1B). Moreover, immunohistochemistry (IHC) stain of lated RCP drives cell proliferation and enhances cell invasion
RCP was performed on a commercial lung cancer patient tissue in vitro. Next, we further investigated the role of RCP on growth
microarray. A higher RCP expression score in advanced and and local invasion of graft tumors with a subcutaneous
metastatic stage was observed, and a chi-square test showed that transplantation tumor model. As shown in Fig. 3A, B, RCP-
there are significant differences both between normal and tumor deletion significantly decreased tumor volume and mass, while
tissues (p < 0.0001) and between early and late stages of tumor RCP overexpression re-increased tumor volume and mass. Except
tissues (p = 0.001459) (Fig. 1C, Table S1). Taken altogether, these that, tumor cells showed a form of invasion into the surrounding
results show that the expression levels of RCP are significantly normal tissues in the control and RCP overexpression groups.
upregulated in lung cancer and positive associated with lung While the invasion ability of RCP knockout tumors was inhibited
cancer progression. (Fig. 3C). These results show that RCP play an important role in
promoting lung cancer tumor growth and invasion.
RCP drives lung cancer cell proliferation and invasion in vitro Given that the influence of primary graft tumor burden on
RCP had been reported to maintain the abundance of metastatic ability of cancer cells in transplantation tumor model,
membrane proteins from recycling vesicles to boost oncogenic experimental metastasis model through intravenous inoculation
signals [6]. To gain the molecular functions of RCP in lung of lung cancer cells (H1299 and H460) was also conducted.
cancer, we knocked out RCP in H1299 cells and extracted the Compared with empty vector control, RCP knockout H460 cells
total plasma membrane protein for mass spectrometry profiling significantly suppressed tumor colonization and metastasis in
(Fig. S1A). We observed that RCP depletion caused a decrease in distant organs (Fig. 3D, I). In addition, RCP re-expression in RCP-
the abundance of membrane-associated proteins, the top ten deletion cancer cells rescued the inhibited metastatic ability. We
decreased proteins were listed (Table S2). Among them, found the similar results in H1299 experimental metastasis model
regulation of membrane-associated integrin β1 and EGFR’s (Fig. S2A, F). Collectively, high expression of RCP in lung cancer
abundance by RCP in lung cancer cell lines was further plays a critical role in promoting tumor growth, invasion,
confirmed by immunoblotting and immunofluorescence (Fig. colonization, and metastasis.
2A, S1B, C). RCP deletion dramatically downregulated the levels
of membrane-associated integrin β1 and EGFR. On the contrary, Sp1, Sp3, and Stat3 are identified as transcriptional activators
the abundance of integrin β1 and EGFR on membrane were of RAB11FIP1
reversed after re-expression of exogenous RCP in RCP-knockout To explore the upstream factors that regulate the expression of
H1299 cells. Furthermore, it was clearly observed that high-level RCP, we first extract the total RNA and genomic DNA of lung
of RCP promote the aggregation of integrin β1 and EGFR cancer and normal cells. We observed that the mRNA expression

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of RCP significantly increased in lung cancer cells compared with addition, we observed the same results from human breast cancer
normal lung epithelial BEAS-2B cells and lung fibroblast MRC-5 cell lines and noncancerous human breast epithelial MCF10A cells
cells (Fig. 4A). On the contrary, the copy numbers of RAB11FIP1 of (Fig. S3A, C). Taken together, these findings support the notion
these cell lines had no difference, indicating that there is no that RAB11FIP1 maintains high transcription levels to enhance RCP
amplification of RAB11FIP1 in these lung cancer cells (Fig. 4B). In expression in cancer cells.

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Fig. 3 RCP drives lung cancer tumor growth and metastasis in vivo. A–C Tumor progression generated by subcutaneous injection of H460
cells with or without RCP expression into nude mice. A Quantification of tumor weight (left) and representative images (right) of injected
subcutaneous graft tumors. Scale bar, 1 cm. B Representative immunohistochemistry images showing RCP levels in H460 tumors with or
without RCP expression. Scale bar, 250 μm. C Representative H&E images of tumor local invasion. Scale bars, 250 μm (left) and 100 μm (right).
D–I Tumor metastasis generated by tail vein injection of H460 tumor cells with or without RCP expression into nude mice. D Representative
immunohistochemistry images showing RCP levels in macrometastases in lung and liver tissues. Scale bar, 250 μm (top) and 100 μm (bottom).
E Quantification (left) of visible metastatic tumor nodules and representative images (right) of lungs. (F and G) Representative histopathology
(H&E staining) of lung sections (F). The metastatic foci are indicated by the arrows. The rectangles in the top row indicate the enlarged areas
shown at the bottom. Scale bars, 2 mm (top) and 250 μm (bottom). G Numbers of metastatic foci per lung and the percentage (right) of the
lung metastasis area relative to lung section area (F). H, I Representative histopathology (H&E staining) (H) of the liver sections. I The number
(left) of metastatic foci per field of view and the percentage (right) of the liver metastasis area relative to the total liver section area. The
dashed lines indicate the border between macrometastases and normal liver tissue. Scale bar, 100 μm. Data are represented as mean ± SD. *p
< 0.05, **p < 0.001, ***p < 0.0001. Statistical analysis for multiple group comparisons were performed using one-way ANOVA with Dunnett’s
test (A, E, G, and I).

Until now, the transcriptional factors of RCP remain unknown. molecule inhibits the phosphorylation of Stat3 and thereby
To identify potential transcription factors, we biotinylated the inhibits the transcription ability of Stat3). Both inhibitors
promoter region of RAB11FIP1 (GRCh38.p13: 37899439 to caused a dose-dependent and time-dependent reduction in
37899977, 539 bp) to precipitate the DNA probe-bound proteins RCP mRNA and protein levels (Fig. 5A, B). These results indicate
from H1299 nuclear extracts and analyzed the interacting proteins that Sp1, Sp3 and Stat3 are important for transcriptional
by mass spectrometry (Fig. S1D, E). Molecular functional analysis upregulation of RCP in cancer cells. Furthermore, knockdown
identified seven potential transcription factors in the eluted of either Sp1 or Sp3 downregulated RCP expression (Fig. 5C).
solution by peptide mass fingerprinting as “DNA-binding tran- Co-suppression of both genes substantially reduced RCP
scription factor activity” (Table S3). By using a siRNA-based protein expression in a synergistic manner. In addition,
functional screening, we found that Stat3, Sp1 and Sp3 knock- overexpression of either Sp1 or Sp3 markedly upregulated
down significantly decreased the transcription level of RCP (Fig. RCP expression (Fig. 5C). Similarly, knockdown of Stat3
4C, S3F). Furthermore, Sp1, Sp3 and Stat3 were all significantly decreased the levels of RCP in H1299 cells (Fig. 5D). As
upregulated in cancer cells than in corresponding normal cells expected, overexpressing of Stat3 enhanced the transcription
(Fig. 4D and S3G). Next, we validated the binding of Sp1, Sp3 and of RCP (Fig. 5D). Therefore, Sp1, Sp3 and Stat3 are the
Stat3 with promoter of RAB11FIP1 by DNA competitive binding transcriptional activators that enhance RCP expression by
assays. We found that the interaction of Sp1, Sp3, and Stat3 with binding to the conserved GC-rich motifs and Stat3 binding
biotinylated DNA probes derived from promoter sequence of site in RAB11FIP1.
RAB11FIP1 was blocked competitively by the unlabeled probes Next, we speculated that Sp1, Sp3 and Stat3 could affect the
(Fig. 4E). Moreover, the binding of Sp1, Sp3 and Stat3 with distribution of membrane-associated EGFR and integrin β1
promoter of RAB11FIP1 were confirmed by chromatin immuno- through regulating RCP expression. H1299 cells was treated with
precipitation (ChIP) (Fig. 4F, G). mithrmycin and stattic, respectively. RCP expression was signifi-
By analyzing the promoter sequence of RAB11FIP1, we found cantly downregulated in H1299 cells with Sp1/3 or Stat3 inhibitors
seven GC-rich motifs and one Stat3 binding site locate upstream (Fig. 5E). Additionally, EGFR and integrin β1 in the plasma
of the TATA box that act as potential Sp1/3 response elements and membrane distribution was decreased, especially around the
Stat3 response element, respectively. To further evaluate the pseudopod where tumor cells migrate (Fig. 5F). Conversely, the
contribution of these GC-rich motifs and Stat3 binding site to RCP suppression by inhibitors treatment were slightly restored by
transcriptional regulation, we subcloned DNA fragments contain- overexpression of RCP exogenously in H1299 cells (Fig. 5E, F),
ing wild-type response elements, truncated response elements while the mRNA levels of EGFR and ITGB1 was not affect by these
lacking different GC-rich motifs into the promoter region of a two inhibitors (Fig. S4A). Finally, the proliferation and invasion
firefly luciferase reporter plasmid. We found only deletion of the ability of H1299 cells were significantly suppressed by the
#2 or #3 GC-rich motifs significantly suppressed luciferase inhibition of Sp1/3 or Stat3 (Fig. 5G, H). On the contrary,
expression (Fig. 4H). Subsequently, we performed ChIP assays to exogenous overexpression of RCP can reverse the suppressed
determine whether endogenous Sp1 and Sp3 bind to these two cell proliferation and invasion of H1299 cells. Similarly, the amount
GC-rich motifs and detected an enrichment in RAB11FIP1 of 18- of EGFR and integrin β1 in the cell membrane, and the
fold (anti-Sp1) or 18.7-fold (anti-Sp3) relative to the amount bound proliferation and invasion ability of H1299 cells were significantly
by isotype IgG (Fig. 4I). ChIP assay confirmed Sp1 and Sp3 binding suppressed by knocking down of Sp1/3 or Stat3 (Fig. S4B, C, D).
to #2 and #3 GC-rich motifs in the promoter of RAB11FIP1 Conversely, the suppressed cell proliferation and invasion were
(Fig. 4I, L). Moreover, deletion of the Stat3 binding site down- restored by upregulation of RCP. Overall, these data show that RCP
regulated luciferase expression as well (Fig. 4J), and ChIP results is transcriptionally upregulated by Sp1, Sp3, and Stat3, which
also confirmed this specific binding location of Stat3 (Fig. 4K, L). maintains the abundance of membrane-associated proteins (like
Similarly, we identified two conserved GC-rich motifs and one EGFR and integrin β1), thereby promoting cancer cell proliferation
Stat3 binding site in murine RAB11FIP1 (Fig. S3H). Collectively, we and invasion.
confirmed Sp1, Sp3, and Stat3 are transcriptional activators of
RAB11FIP1. Wild-type p53 suppressed RCP transcription in an Sp1 and
Sp3 dependent manner
Sp1, Sp3, and Stat3 regulate RAB11FIP1 to increase tumor Our prior study showed that RCP is a key effector downstream of
invasion mutant p53 [13]. However, the molecular mechanism of p53/RCP
To study the regulation of Sp1, Sp3 and Stat3 on RCP axis has not yet been established. So, we sought to determine
transcription, we first treated H1299 cells with mithramycin (a whether p53 functions in the regulation of RCP expression. First,
small molecule capable of occupying GC-rich motifs to inhibit we evaluated the correlation between RCP expression level with
the transcription function of Sp1 and Sp3) and Stattic (a small TP53 alterations in The Cancer Genome Atlas (TCGA) lung cancer

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dataset. Results showed that high levels of RCP are significantly levels of RCP (Fig. 6B, C and S5B). Re-expression of wild-type
associated with TP53 alterations (Fig. 6A). Furthermore, lung p53 significantly downregulated the protein and mRNA levels of
cancer cells with TP53 mutations showed higher levels of RCP RCP (Fig. 6B, C and S5B). A luciferase reporter driven by the human
transcripts compared with wild-type p53 cells (Fig. S5A). Moreover, RAB11FIP1 promoter (GRCh38.p13: 37899439 to 37899977) can be
wild-type p53 depletion increased both the protein and mRNA suppressed by wild-type p53 (Fig. 6D), which further confirmed

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Fig. 4 Sp1, Sp3 and Stat3 are identified as transcriptional activators of RAB11FIP1. A mRNA levels of RCP were analyzed by qRT-PCR and
normalized to β-actin mRNA levels in normal lung cells (BEAS-2B and MRC-5) and lung cancer cells (A549, H157, H358, H441, H460 and H520).
B RAB11FIP1 copy number were analyzed by qPCR and normalized to RPPH1 in normal lung cells (BEAS-2B and MRC-5) and lung cancer cells
(A549, H157, H358, H441, H460 and H520). C mRNA levels of RCP were analyzed by qRT-PCR and normalized to β-actin mRNA levels in H1299
cells (siCtrl, siARNTL, siCLOCK, siHLTF, siL3MBTL3, siSP1, siSP3, siSTAT3). All group transfected by siRNAs targeting indicated transcription factor
relative to nontargeting control siRNAs (siCtrl) (top). Similarly, protein levels of RCP were accessed by WB (bottom). D Sp1, Sp3, Stat3 and RCP
protein levels were assessed by immunoblotting (left) in BEAS-2B, A549, and H1299 cells, and quantified (right) and normalized to the
corresponding BEAS-2B cells. E Precipitates obtained by DNA pulldown assays in the absence or presence of unlabeled RAB11FIP1 genomic
DNA were examined by WB. F, G The binding ability of Sp1 (F), Sp3 (F) and Stat3 (G) with the RAB11FIP1 promoter region were detected by
chromatin immunoprecipitation (ChIP) in H1299 cells. H Luciferase assay of human RAB11FIP1 promoter constructs with deletion of different
GC-rich motifs in H1299 cells. I ChIP qPCR analysis of Sp1 and Sp3 binding to the validated sequence (which containing #2 and #3 GC-rich
motifs) locates at human RAB11FIP1 promoter in H1299 cells. J Luciferase assay of human RAB11FIP1 promoter constructs with deletion of
Stat3-binding site in H1299 cells. K ChIP analysis of Stat3 binding to the human RAB11FIP1 promoter in H1299 cells. L Promoter region of
human RAB11FIP1. Sp1/3 response elements (GC-rich motifs) and Stat3 binding site are indicated in red and highlighted. The capital letters
indicate the transcription start site, and the translation start site is indicated in green. Data are represented as mean ± SD. *p < 0.05, **p <
0.001, ***p < 0.0001. Statistical analysis for multiple group comparisons were performed using one-way ANOVA analysis with Dunnett’s test (A,
B, C, D, H, I, and J), two-tailed Student’s t-tests (K).

that wild-type p53 exerts its suppression activity through the different p53 binding to RAB111FIP1 promoter region via Sp1/3
promoter of RAB11FIP1. Early studies reported that p53 can repress (two GC-rich motifs) or Stat3 (Stat3 binding site). “DNA contact”
mRNA transcription by directly binding to p53 response elements p53 mutant R273H binds to the promoter region of RAB11FIP1
in target promoters [36]. To assess the molecular basis underlying together with Sp1/3 (Fig. 7A). Although “conformational” p53
p53-mediated RCP repression, we firstly analyzed the genomic mutant R175H form a complex with Sp1/3, but this protein
sequences of human and murine RAB11FIP1 through the JASPAR complex did not associate with promoter of RAB11FIP1. Wild-type
and TRANSFAC databases. However, no putative p53 response p53 cannot bind to the RAB11FIP1 promoter region (Fig. S6G).
element was identified in RAB11FIP1. Therefore, we wonder Furthermore, a luciferase reporter driven by the human RAB11FIP1
whether wild-type p53 can repress transcription by antagonizing promoter can be promoted by “DNA contact” p53 mutant R273H
other transcriptional activators of RAB11FIP1. in an Sp1/3-dependent manner (Fig. 7B). The co-IP results showed
Previous studies have reported that the interaction between that wild-type p53 and all forms of mutant p53 retained their
wild-type p53 and Sp1/3 impaired the transcriptional capabilities interaction with Sp1/3 in nuclei (Fig. 7C), which is consistent with
of Sp1/3, leading to repression of several Sp1/3-inducible genes previous reports [39]. Interestingly, the levels of interaction
involved in embryonic development and angiogenesis [37] as well between “DNA contact” mutants and Sp1/3 were higher than
as tumorigenesis [38]. In this study, we found knockdown of Sp1/3 that between either wild-type p53 or “conformational” mutants
inhibit the effect of wild-type p53 on RCP expression (Fig. 6E, F). and Sp1/3. Although the ratio of nuclear p53 to total p53 was
Nevertheless, knockdown of Stat3 did not affect the suppression different among the different p53 mutants and wild-type p53,
activity of p53 on RCP expression. Ultimately, these observations endogenous Sp1/3 was consistently localized mainly in the
reinforce the idea that p53 indirectly modulates RCP expression nucleus (Fig. 6H and S5E). Lastly, we performed ChIP assays to
through Sp1/3. Furthermore, overexpression of wild-type p53 investigate whether the p53-Sp1/3 complex is involved in
caused Sp1 and Sp3 downregulated compared with vector control regulating the DNA binding efficiency of Sp1/3. Consistent with
(p53 null), leading to substantial decrease in the RCP mRNA and the role of wild-type p53 in diminishing Sp1/3 levels and
protein levels in H1299 cells (Fig. 6G). Consistently, levels of Sp1 subsequently decreasing RCP expression, forced expression of
and Sp3 in the nucleus were significantly reduced by introduction wild-type p53 triggered a significant decrease in the binding
of wild-type p53 (Fig. 6H and S5E). Contrary to wild-type p53, efficiency of Sp1/3 to the RAB11FIP1 promoter (Fig. 7D).
expression of mutant p53 did not decrease RCP expression (Fig. Additionally, the ability of Sp1/3 binding to RAB11FIP1 was
6G). Intriguingly, the introduction of “DNA contact” mutants enhanced by the “DNA contact” mutants not the “conformational”
(R248W, R273H and R280K) robustly increased the transcripts and mutants.
protein levels of RCP, whereas “conformational” mutants (R175H Taken together, these results confirm that wild-type p53
and Y220C) showed no effect compared to those in p53-null cells. decrease Sp1/3 levels, leading to the suppression of RCP
Consistently, RCP expression remains unaffected by knockout of transcription. Notably, loss of wild-type p53 or expression of
“conformational” p53 mutant R175H (Fig. S5C). Only “DNA mutant p53 maintains Sp1/3 expression (LOF) to upregulate RCP
contact” p53 mutant (R273H and R280K) knockdown significantly transcription. Specifically, only the “DNA contact” mutants of p53
reduced RCP expression (Fig. S5D). Surprisingly, the total protein enhance the DNA binding efficiency of Sp1/3 to further drive RCP
levels of Sp1 and Sp3 had no difference among control, “DNA transcription (GOF) (Fig. 7E).
contact” mutant and “conformational” mutant groups (Fig. 6G, H,
S5E, F). Notably, immunofluorescence showed that mutant p53
R273H displayed predominantly nuclear distribution (Fig. 6H). In DISCUSSION
contrast, mutant p53 R175H exhibited reduced nuclear staining Most studies on oncogenic properties of RCP mainly focus on
with a compensatory increase in cytoplasmic staining, while Sp1/ breast cancer before, the global influence of RCP on lung cancer
3 showed a homogenous nuclear distribution. More importantly, has not yet been fully elucidated. In this study, we demonstrated
p53 R273H showed a higher colocalization efficiency with Sp1/3 in that the high expression of RCP enhanced lung cancer
nuclei than p53 R175H (Fig. 6H). Collectively, wild-type p53 progression. We first identified that Sp1/3 and Stat3 are the
decrease Sp1/3 expression, leading to downregulation of RCP in transcription activators of RCP. Our previous work had demon-
an Sp1/3-dependent manner. strated that mutant p53 drives metastasis via RCP mediated
Hsp90alpha secretion in breast cancer, lung cancer and
DNA contact mutants of p53 enhance Sp1 and Sp3 pancreatic cancer [13]. As a transcriptional regulator, p53 is
transcriptional activity to further drive RCP expression involved in modulating RCP expression in an Sp1/3 dependent
To study the different mechanisms of “DNA contact” mutants and manner. In contrast to wild-type p53 suppression of RCP
“conformational” mutants upregulating RCP, ChIP assays were transcription by decreasing Sp1/3 levels, TP53 mutations are
performed. We used all three pairs of ChIP primers to test whether associated with increased expression of Sp1/3 as well as

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enhanced binding capability of Sp1/3 to RAB11FP1. Furthermore, cancer progression, providing important therapeutic implica-
our work suggests a gain-of-function activity of “DNA contact” tions for p53 mutant lung cancer.
mutant of p53 by which it increases the expression of RCP,
thereby promoting tumor progression. Collectively, these Highly expressed RCP is critical for lung cancer progression
findings imply that mutations in TP53 upregulates the transcrip- As a heterogeneous disease, lung cancer is difficult to treat. The
tion of RCP in an Sp1/3 dependent manner to promote lung functional associations between oncogenes that drive lung cancer

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C. Wang et al.
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Fig. 5 Sp1, Sp3 and Stat3 regulate RAB11FIP1 to increase tumor invasion. A mRNA levels of RCP were analyzed by qRT-PCR in H1299 cells
after treatment with the indicated concentration of Mithramycin and Stattic for 48 h. B RCP protein levels in H1299 cells after treatment with
the indicated concentration of Mithramycin and Stattic for 24 h and 48 h. C RCP mRNA (top) and protein (bottom) levels in H1299 cells with
Sp1 and Sp3 knockdown (left) and Sp1 and Sp3 overexpression (right). D RCP mRNA (top) and protein (bottom) levels in H1299 cells with Stat3
knockdown (left) and Stat3 overexpression (right). E Abundance of EGFR and integrin β1 in cell membrane components were detected by
immunoblotting in H1299 cells with RCP overexpression, treated with Mithramycin or Stattic. The relative EGFR and integrin β1 intensity were
normalized to Na, K-ATPase α1. F Abundance of EGFR and integrin β1 in cell membrane components were detected by immunofluorescence
in H1299 cells with RCP overexpression, treated with Mithramycin and Stattic. Scale bar, 10 μm. G Colony formation ability of H1299 cells with
or without RCP expression, treated with Mithramycin or Stattic. Quantitative numbers of colonies in six-well plates (left) representative images
(right). Representative results from three independent experiments are presented. H Invasion capability of H1299 cells with or without RCP
expression, treated with Mithramycin or Stattic. Quantitative numbers of invaded cancer cells per view (left) and representative images (right).
Representative results from three independent experiments are presented. Data are represented as mean ± SD. *p < 0.05, **p < 0.001, ***p <
0.0001. Statistical analysis for multiple group comparisons were performed using one-way ANOVA with Dunnett’s test (A, C, D, G, and H).

progression has been wildly defined [40, 41]. Recently, some activities that contribute to tumor development and progres-
molecular mechanisms of lung carcinogenesis and progression sion [49]. It had been found that GOF p53 inactivate other p53
have been elucidated, and molecularly targeted approaches for family members, in particular the tumor proteins p63 and p73
lung cancer patients have now reached the clinical arena [42–44]. [50, 51]. Other evidences suggest that these pro-oncogenic
Even though, lung cancer is still the leading cause of death in functions of mutant p53 proteins are mediated by affecting the
global [1]. Emerging evidences indicate that RCP is highly transcription of various genes, as well as by protein-protein
expressed and associated with poor clinical outcomes in various interactions with transcription factors and other effectors.
types of cancer [8, 9]. Consistent with that, the present study Remarkably, our previous study indicated that the “DNA
shows that RCP is highly expressed in lung cancer and elucidates contact” mutp53 (R273H and R280K) had GOF effects by
its clinical correlation in cancer patients. Until recently, the upregulating RCP expression to facilitate the secretion of
function of RCP had been found in esophageal cancer and head eHsp90alpha [13]. In addition, other groups had proved that
and neck squamous cell carcinoma [11, 12, 14]. Herein, we GOF p53 facilitated tumor progression in RCP-dependent
discovered high expression of RCP facilitated lung cancer manner [13, 34, 52].
progression. More than that, invasive tumor cells with RCP The molecular mechanism of the mutant p53/RCP axis has
deletion showed a reduction in tumor growth and metastasis. been established in the present study. We observed that p53
While RCP overexpression can recover tumor progression. There- regulated RCP expression dependent on Sp1/3. We demon-
fore, blocking RCP can be a potential therapeutic target for lung strated that mutant p53 transcriptionally upregulates RCP
cancer. expression. Our increasing understanding of the mechanisms
by which mutant p53 mediates these oncogenic activities has
Sp1, Sp3 and Stat3 are transcriptional regulators of RAB11FIP1 been derived from exploring the consequences of the physical
Though RCP had been reported as an oncogene to promote interaction between mutant p53 proteins and other transcrip-
cancer progression [6, 11–15, 45]. Our current study had also tion factors. Our results demonstrated that wild-type p53
demonstrated RCP can promote lung cancer progression. How- decrease Sp1 and Sp3 levels, thus resulting in suppressed
ever, no one has reported the upstream regulators that enhance transcription RCP. One possible mechanism is that wild-type
the expression of RCP. In this study, we first identified Sp1, Sp3 p53 binds to Sp1 and Sp3 to induce their degradation [38].
and Stat3 are transcriptional regulators of RAB11FIP1. As previous There is a general agreement that mutations in p53 abrogate its
studies show that Sp1 and Stat3 functionally synergize to induce ability to repress Sp1/3 target genes [37]. Consistent with this
RhoU transcription in breast cancer [46], another study demon- observation, we found that either “conformational” mutants or
strated physical interaction of Stat3 and Sp1/Sp3, their recruitment “DNA contact” mutants can induce RCP expression via main-
to the Sp cis-elements in a Stat3 DNA-binding domain-dependent taining Sp1/3 levels (LOF). However, whether all p53 mutants
fashion to increase NHE3 transcription [47]. Based on our results are defective in binding to Sp1/3 remains debated. Lowe
that knockdown Sp1/3 or Stat3 (as well as Sp1/3 or Stat3 laboratory found that only the introduced wild-type p53 bound
inhibitors) leads to repressed RCP transcription, co-suppression of to Sp1, whereas the endogenous p53 Y220C mutant did not
these TFs reduced RCP expression in a synergistic manner, [38]. The effects of “conformational” and “DNA contact”
suggesting that stat3 and Sp1/3 may cooperate to induce high mutations in p53 on its cellular localization have been studied
RCP expression. Previous studies have found that the expression in depth [53]. Given the diverse intracellular localizations of p53
levels of Sp1, Sp3 and Stat3 proteins and their transcriptional and nuclear localization of Sp1/3, we performed co-IP with
activity are positively correlated with the malignancy of tumors, either Sp1 or Sp3 and confirmed that both “conformational”
and they all play a role in promoting the occurrence and and “DNA contact” mutants retain the ability to interact with
development of tumors [48]). Sp1 also been reported to interact Sp1/3. Our results show that the “DNA contact” mutants form a
with many other nuclear factors to regulate downstream gene tight complex with Sp1/3 in nuclei, whereas the “conforma-
expression. Moreover, Sp1 usually interacts with GC and GT tional” mutants participate in a weak and transient protein-
oligonucleotide sequences in the promoter region of target gene. protein interaction with Sp1/3 because of their retention in the
Consistent with that, our study further found that Sp1 and Sp3 cytoplasm. Importantly, through ChIP assays, we identified that
binding to #2 and #3 GC-rich motifs in the promoter of RAB11FIP1. only the “DNA contact” mutants had the GOF effects by
For the precise molecular mechanism underlying Sp1, Sp3 and enhancing Sp1/3 bind to the GC-rich motifs in RAB11FIP1. Thus,
Stat3 transcriptional regulation of RAB11FIP1 need further GOF mutant p53 aids RCP in oncogenesis dependent on Sp1/3,
investigation. raising the possibility of targeting GOF mutant p53 with Sp1/3
inhibitors.
GOF p53 regulate RCP expression dependent on Sp1/3 In conclusion, we first identified the function of RCP on lung
Mutation of TP53 is one of the most frequent genetic lesions in cancer progression, and the transcriptional regulatory mechan-
human cancers. Mutant p53 exhibits various gain-of-function ism of RCP. Furthermore, we elaborated the regulation

Oncogene (2022) 41:2357 – 2371


C. Wang et al.
2367

mechanism of different p53 on RCP, respectively. Wild-type p53 their retention in the cytoplasm. Different with “conforma-
decreases Sp1 and Sp3 levels to suppress RCP expression. While tional” mutants of p53, “DNA contact” mutants have GOF effects
the “conformational” mutants participate in a weak and by enhancing the interaction between p53 and Sp1/3 to induce
transient protein-protein interaction with Sp1/3 because of RCP expression. Our results support the notion that different

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C. Wang et al.
2368
Fig. 6 Wild-type p53 Suppressed RCP Transcription in an Sp1 and Sp3 Dependent Manner. A RAB11FIP1 mRNA levels in p53 wild-type and
p53 alterations Lung cancer patients. Data from TCGA lung cancer database (ID:LUAD). B RCP mRNA levels (top) and protein levels (bottom)
were detected in H460 and H1299 cells with or without wild type p53. C RCP mRNA levels (top) and protein levels (bottom) were detected in
A549 cells with or without wild type p53. D Luciferase reporter assay of RAB11FIP1 transcription levels in H1299 cells transfected with wild-type
p53. E Luciferase reporter assay detected the RAB11FIP1 transcription levels in wild type and p53 knockout H460 cells with Stat3 and Sp1/3
knockdown. F RCP mRNA levels were detected in H1299 p53 null cells and p53 overexpression cells with Stat3 and Sp1/3 knockdown. G RCP
mRNA levels analyzed by qRT-PCR and protein levels analyzed by immunoblotting in H1299 cells transfected with wild type p53 and different
mutant p53. The quantities were normalized to the ctrl vec group. H Representative images (left) and quantified results (right) of co-
localization between p53 and Sp1/3. Immunostaining for p53 (red) and Sp1(top) or Sp3 (bottom) (both in yellow) in H1299 cells transfected
with Ctrl vec, wild-type p53, p53 R175H or p53 R273H. Cells were subjected to F-actin staining with Alexa Fluor 488 Phalloidin and nuclear
staining with DAPI (blue). Scale bar, 10 μm. Colocalization efficiency of Sp1 (top) or Sp3 (bottom) and mutant p53 was quantified. Data are
represented as mean ± SD. *p < 0.05, **p < 0.001, ***p < 0.0001. Statistical analysis for multiple group comparisons were performed using one-
way ANOVA with Dunnett’s test (B, C, E, F, and G), Student’s t-test (A, B, D, and H).

p53 mutants utilize distinct mechanisms to acquire unique tumor sizes and body weights of animals were monitored. Tumor volume
oncogenic potential during cancer progression. was measured with calipers every 3 days and calculated as the formula v =
0.5 × length × (width)2. At protocol-defined endpoints, all mice were
sacrificed, tumors were isolated and weighed. For intravenous injections
MATERIALS AND METHODS of H460 and H1299 cells, 1 × 106 cells per injection, n = 6 mice per group.
The lungs were dissected and fixed in Bouin’s solution to quantify the
Cell proliferation assays and colony formation assays visible metastatic tumor nodules. The livers were removed and fixed in 4%
Cell proliferation assays and colony formation assays were performed as (wt/vol) PFA.
we described previously with modifications [54]. Cells were seeded in 96-
well plates (2 × 103 cells/well for H1299 and A549 cells, 2 × 103 cells/well for
H460 cells, 3 × 103 cells/well for BEAS-2B cells) and cell viability was Histological examination
measured by using the Cell Counting Kit-8 (Dojindo lab, Cat:CK04-500) at Histological examination assays are described previously [13]. The fixed
24 h and 48 h. Cells were seeded in 6-well plates (5 × 102 cells/well for mouse lung and liver tissues were dehydrated and embedded in
H1299 and A549 cells, 5 × 102 cells/well for H460 cells, 1 × 103 cells/well for paraffin and were cut into 6-μm sections. The sections were counter-
BEAS-2B cells) and cultured in completed medium for 1 week. Colonies stained with haematoxylin and eosin (H&E). Olympus IX71 optical
were fixed with 4% paraformaldehyde and stained with 0.5% crystal violet microscope was used to obtain the liver and lung metastasis areas. The
overnight. Colonies were quantified by counting and images were metastatic lesions were analyzed with Image-Pro Plus 6.0 (Image-Pro
obtained. Plus, RRID:SCR_007369).

Coimmunoprecipitation assay Biotin labeling of RAB11FIP1 and DNA pulldown assay


Co-IP assays are described as previously [13]. Briefly, cells were lysed in The biotinylated RAB11FIP1 DNA probes (GRCh38.p13: 37899439 to
NP40 buffer with complete protease inhibitor mix at 4 °C. Protein G 37899977) were generated by using PCR with the oligonucleotide primers
Sepharose was used to preclear samples. And equal amounts of total modified at their 5’ends. The sequences of RAB11FIP1 DNA probes were
protein were immunoprecipitated with corresponding antibodies or IgG at shown in Table S9. Nuclear extracts from H1299 cells were prepared using
4 °C with constant rotation. The complexes were precipitated with protein a Nuclear Complex co-IP Kit with complete protease inhibitor mix. Nuclear
G beads. Antibodies were used as followed: anti-p53 (Santa Cruz extracts were incubated with DNA probes overnight at 4 °C with constant
Biotechnology Cat# sc-126) for p53, anti-Sp1 (Millipore Cat# 07-645, rotation. The complexes were precipitated with the Streptavidin Magnetic
RRID:AB_11213103)) and anti-Sp3 (D20, Santa Cruz, sc-644) and control IgG Beads (NEB, UK), and washed four times with PBS buffer with complete
(Cell Signaling Technology Cat# 3900, RRID:AB_1550038). protease inhibitor mix and then resolved on 10% SDS-PAGE gel.
Precipitates were analyzed by Western blot. Proteins were immunoblotted
with the following antibodies: anti-Sp1 (D4C3, Cell Signaling, #9389) and
Invasion assay anti-Sp3 (D20, Santa Cruz, sc-644). An aliquot of each lysate was used as
24-well transwell inserts (Millipore, Billerica, MA) were lined with Matrigel
input control.
(Corning, New York, USA). The lower chambers were filled with media
containing 10% FBS and the chemoattractant EGF (25 ng/ml), the upper
chambers filled with media containing 2% FBS. The cells invaded into RAB11FIP1 luciferase reporter assay
Matrigel plugs for 24 h, and were then stained with 0.5% crystal violet The pGL3-basic vector (RRID:Addgene_48743) and pRL-CMV plasmid
overnight. Invaded cells were quantified by counting and images were were gifts from Dr. P. Jiang. To evaluate the contribution of each GC-rich
obtained. motif to RCP transcriptional regulation, the genomic fragments of
RAB11FIP1 containing all GC-rich motifs (pGL3-RAB11FIP1 with wild-type
response elements) or truncated response elements lacking different
Mouse studies GC-rich motifs were cloned into pGL3-basic vector. The reporter
Female BALB/c nude mice ages 4-6 weeks (Beijing, Vital River) were housed plasmids were then transfected to H1299 cells together with a Renilla
in pathogen-free barrier facilities and maintained in a 12 h light/dark cycle luciferase plasmid. For examining the roles of wild-type p53 and mutant
in isolated ventilated cages, 22-26 °C with sterile pellet food and water p53 in regulation of RCP transcription, pGL3 -RAB11FIP1 and pRL-MCV
supply ad libitum. The laboratory animal facility has been accredited by were cotransfected in H1299 cells expressing wild-type p53 or mutant
AAALAC (Association for Assessment and Accreditation of Laboratory p53 (R175H, Y220C, R248W, R173H or R280K). 24 h after transfection, the
Animal Care International) and the IACUC (Institutional Animal Care and
luciferase activity was determined using a dual Luciferase Assay System
Use Committee) of Tsinghua University approved all procedures in this (Promega, Madison, WI). Transfection efficiency was normalized on the
study (Approval numbers: 16-LYZ4 and 18-LYZ2) in accordance with the basis of the Renilla luciferase activity.
Guide for the Care and Use of Animals. The investigators were not blinded
to the group allocation during the experiments.
For the subcutaneous tumor implantation assays, we established H460 Chromatin immunoprecipitation and ChIP qPCR
cell lines with knockout of endogenous RCP (CRISPR RCP, RCP-deletion The DNA fragments were prepared using a ChIP Assay Kit (Millipore,
cells), and further exogenous overexpression of RCP (RCP OE) in Billerica, MA). Briefly, H1299 cells were crosslinked with 1% (wt/vol)
RCP-deletion cells, cells were suspended in 50 μl of RPMI-1640 medium formaldehyde solution for 10 min at 37°C. The crosslinking reaction was
and were subcutaneously inoculated in six-week-old female Balb/c-nu stopped by the addition of 125 mM glycine and then lysed in 1 ml SDS
mice. 1 × 106 H460 cells per injection, n = 6 mice per group. Primary lysis buffer with complete protease inhibitor mix for 10 min on ice.
tumors were quantified twice per week via caliper measurement. The Lysates were then sonicated to generate DNA fragments with the

Oncogene (2022) 41:2357 – 2371


C. Wang et al.
2369

Fig. 7 Mutant p53 GOF regulate RCP expression dependent on Sp1/3. A The binding ability of conformational mutant p53 (R175H) and
DNA contact mutant p53 (R273H) with the RAB11FIP1 promoter region were detected by chromatin immunoprecipitation (ChIP). B Luciferase
reporter assay of RAB11FIP1 transcription levels in H1299 cells (p53 R175H and p53 R273H expression) with STAT3 and SP1/3 knockdown. C p53
and Sp1/3 were detected in precipitates by co-IP with Sp1/3 in H1299 cells stably expressing p53 wild type or p53 mutants (top). The co-IP
efficacy was normalized to p53 wild type (bottom). D ChIP assays for the binding efficiency of Sp1 (left) or Sp3 (right) to the RAB11FIP1
promoter in H1299 cells transfected with Ctrl vec, wild-type p53 or mutant p53. E Schematic summarizing the different mechanisms of the
multiple actions of wild-type p53 and mutant p53 in modulating RCP expression. Data are represented as mean ± SD. *p < 0.05, **p < 0.001,
***p < 0.0001. Statistical analysis for multiple group comparisons were performed using one-way ANOVA with Dunnett’s test (B, C, and D).
Comparisons between two groups were performed using two-tailed, unpaired Student’s t-tests (B).

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