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Honors Capstone Research - Final
Honors Capstone Research - Final
An Honors Thesis
Presented by
Completion Date:
May 2022
Approved By:
_____________________________________________
Dr. Richard Schur, Honors Director
_____________________________________________
Dr. Madhuri Manpadi, Chemistry Department
ABSTRACT
Title: Effects of Plumbagin Analogs on the JAK-STAT Pathway
Author: William Dean Lynch III
Thesis/Project Type: Project
This research studies the effect of plumbagin analogs on the JAK-STAT pathway.
Plumbagin is a promising anticancer compound and a known inhibitor of this pathway.
Plumbagin however lacks bioavailability and is not selective for cancer when administered
intravenously. This has led to the exploration of plumbagin analogs that aim to improve upon
plumbagin's poor bioavailability. The inhibition of the JAK-STAT pathway by analogs of
plumbagin were tested on U266 cells via western blotting. Results showed that the chosen
compound did not inhibit this pathway as much as plumbagin.
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Abstract
This research studies the effect of plumbagin analogs on the JAK-STAT pathway.
Plumbagin however lacks bioavailability and is not selective for cancer when administered
intravenously. This has led to the exploration of plumbagin analogs that aim to improve upon
plumbagin were tested on U266 cells via western blotting. Results showed that the chosen
Introduction
The pursuit of anticancer pharmaceuticals has been around ever since the disease they
aim to treat has been characterized. Out of this pursuit, the first attempts at therapeutic
compounds were derived from folk-medicine. Naturally occurring substances were among the
first to be tested and studied1. One naturally occurring compound that has begun testing is
the anticancer properties of plumbagin and found that plumbagin as a molecule has anticancer
properties, mainly through modulation of the STAT3 pathway10 (fig. 2). Signal transducers and
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make cancers which overexpress STAT3 to become more sensitive to apoptosis. Plumbagin has
been found to upregulate the tumor-suppressor genes p53 and p51, resulting in the cell to be
arrested in G2/M phase4. This is likely due to the overexpression of the STAT3 pathway, showing
Despite the promising outlook of plumbagin as treatment for a wide range of cancers, it is
neglected to be used today due to poor bioavailability. Aziz et. al. was able to find that
plumbagin selective targeted inhibited the growth and development of prostate cancer tumors,
while leaving prostate epithelial cells less vulnerable to the apoptotic effects of plumbagin3, but
other sources found conflicting evidence. The general concept of plumbagin is that once it is
administered intravenously, it fails to selectively reach and target tumors18. Further, it fails to
affect secondary tissue as well. Plumbagin's inability to selectively target tumors has led to its
analogs to functional molecules in effort to improve upon potency and functionality—a process
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are being taken—the purpose of this research is to test the efficacy of plumbagin analogs thus
further characterizing the anticancer properties of plumbagin, and identifying functional analogs
U266 cells, human B-cells extracted from a patient with Multiple Myeloma, were
obtained from ATCC. For this research, it was important to have a cell line with the STAT3
Pathway upregulated. One way in which this pathway is mediated is through interleukin-6. For
this research, the U266 cell line was chosen since they upregulate human IL-611. Thus, the
STAT3 pathway is expected to be upregulated in the selected cell line. This allows the inhibition
by our plumbagin analogs more observable in U266 cell lines. The cell line was grown in RPMI
media, (84% RPMI, 15% FBS, 1% Penicillin/Streptomycin). Cells were split, and media was
renewed every 3-4 days. Cells were grown until their concentration was viable for testing. Cell
was plated in each well in a 16 well plate. The wells were then incubated at 37 ºC with DMSO as
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added, and set on ice for 30 minutes, sonicated three times at 0, 15,
and 30 minutes. Then cells were then centrifuged again, and the
SDS-PAGE
SDS-Page is provided in fig. 4. The previously obtained frozen protein lysates were obtained and
thawed on ice, along with 1 mL of 5x sample buffer with 1µL Dithiothreitol (DTT), and protein
ladder. Once thawed, 12 µL of 5x sample buffer and DTT was added to each sample, then boiled
for 5 minutes at 90-100 ºC and centrifuged for 5 minutes. Following, the polyacrylamide gel, 1x
running buffer, and an electrophoresis chamber were obtained. The gel was placed in the
electrophoresis chamber and subsequently filled with 1x running buffer. Each of the 15 wells
were then filled with the protein lysates in a manner similar to fig. 5. 10 µL of Ladder was added
(plumbagin at 25 µM), and C (compound at 25 µM). The wells were assigned in this way so that
the proteins could be transferred to the nitrocellulose membrane and tested at differing antibody
concentrations.
The SDS-PAGE was then run at 130v for roughly an hour, or until the blue line, a
bromophenol dye from the loading buffer, was near the bottom of the gel. The purpose of
nonspecifically to each protein, giving them a uniform negative charge. Then, running the gel at
130v will move all the charged proteins to the anode. The proteins with less molecular weight
will travel faster towards the bottom of the gel than heavier proteins.
1 2 3 4 5 6 7 8 9 10 11 12 13 14 15
L D P C L D P C L D P C D P C
Figure 5
Western Blotting
test if the proteins did in fact transfer, ponceau S was used to stain the blot as seen in fig. 8.
Using the stained membrane, scissors can be used to cut the membrane into strips. The divisions
With the nitrocellulose membrane divided into strips, antibody treatment at various
dilutions were started. For initial studies, Phosphorylated JAK-2 antibodies isolated from rabbit
were decided to be studied. First, the proteins in the membranes were blocked with 5% Bovine
Serum Albumin in TBST for 1.5 hours. The purpose of blocking is to prevent non-specific
interactions between the antibody treatment and any undesired proteins. After blocking, the
1:5000, 1:10,000, and 1:20,000. The membranes were then incubated overnight at 4 ºC on a
shaker. The next day, secondary antibody treatment would occur, which would bind to the
1:5000 for 3 hours at room temperature. After secondary antibody treatment, a colorimetric dye
Results
After several trials, and optimization of the procedure, bands were ultimately obtained
and significant results could be observed. These results will be described below. Cells were
counted and a 1 mL of a concentration of 2 x 106 cells/mL was plated into each well. Six wells
were then incubated for five hours. Two wells each were incubated with DMSO, plumbagin, and
For SDS-PAGE, and Western Blotting, fig. 9 shows how the compounds were assigned to
the following wells, and the corresponding antibody concentrations were used.
1 2 3 4 5 6 7 8 9 10 11 12 13 14 15
L D P 11 L D P 11 L D P 11 D P 11
Figure 10
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Following treatment by colorimetric dye, these results yielded the presence of bands on
the nitrocellulose membrane, pictured in Figure 10. Results of Western Blotting indicate that the
control of DMSO did not inhibit proteins at around 150 - 100 KD. Plumbagin was able to
successfully inhibit proteins at this mark, whereas the compound tested, compound 11, did not
Discussion
The results indicate that the JAK-STAT pathway was not inhibited by the chosen
compound. Using DMSO as the control, it can be seen that there was less inhibition of the
showed similar inhibition to that of DMSO, indicating that it was not successful in inhibiting the
JAK-STAT pathway. Plumbagin and compound 11 are depicted in Figure 11, and their Structure
plumbagin can disrupt the possible anti-apoptotic signals of many cancers through direct binding
with the partial negative charges generated at the 1 and 4 carbons[31]. Thus, this structure was
preserved in compound 11. Compound 11 differs from plumbagin at C-5 and C-2. At carbon-5,
compound 11 retains a hydrogen, whereas plumbagin has an alcohol at this position. The
presence of this alcohol often aids to stabilize plumbagin in its binding pocket[31], meaning that
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compound 11’s apparent lack of inhibition may have come from this modification. The second
modification found in compound 11 was at the carbon-2 position; as seen in figure 11, this is a
large structural change. This addition greatly modifies the molecular weight of the molecule,
possibly adds steric hindrance to the binding pocket, and adds both an aromatic ring, and polar
nitrogens to the molecule. The intention behind this addition appears to remedy the problem of
plumbagin that it cannot selectively target cancer cells once administered intravenously.
Experimentally however, compound 11 lacks the same ability to inhibit the JAK-STAT.
This leads to the conclusion that the bulky addition to the carbon-2 position does not result in
After several trials, and optimization of the procedure, bands were ultimately obtained
and significant results could be observed. Many early trials did not yield observable results; the
western blots lacked the presence of bands where the P-JAK 2 proteins should have been present.
This could have been due to using too few cell antibodies that may have been inactive. In the
final trial of the procedure, new concentrations of both primary and secondary antibodies were
prepared from a fresh stock of antibodies, and different dilutions were tested. From creating new
concentrations of antibodies from the stock solutions, observable results were obtained,
Many other modifications to the procedure occurred during the course of the experiment
in effort to develop a method that is viable. A second modification made was the amount of cell
lysate added to each well during SDS-PAGE. This number was changed from 12 µL to 15 µL.
This was done in effort to increase the density of protein in the well, so that eventual bands
would appear darker on the western blot. Another modification made was during each incubation
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of the experiment. Cells were often incubated with the compounds for times longer than the
originally proposed four hours, yet the final incubation time was five hours. During incubation
temperature for 1.5 hours. This was done so that the antibody might better bind to the intended
proteins. The western blot was also incubated with a secondary antibody for slightly longer, for a
time of 3 hours rather than 2-2.5 so that the secondary antibody might better attach to the
primary.
Altogether, these modifications combined to observable and meaningful results. The two
of the most significant changes exist in preparation of fresh primary antibodies, and incubation
of these primary antibodies. In future experiments, the modification to the incubation of primary
During research, limitations existed. These included inadequate time, occasional lack of
materials/inability to find the materials, contamination, and others. The greatest of these
limitations was inadequate time. Future research is recommended, as there are many more
compounds to test. Additionally, one successful western blot of compound 11 is not sufficient
evidence to effectively rule out this compound as a viable analog of plumbagin. Compound 11
may have anticancer effects on U266 cells at concentrations other than plumbagin, or it may
For future research, prepare fresh aliquots of antibodies at new concentrations. Out of the
concentrations of primary antibodies tested, the concentration that showed the most visible band
was the 1:20,000 concentration, indicating that there might be a more diluted concentration that
could yield better results. Bands however were still not as clear as desired; different antibody
concentrations are recommended for testing so that a more clear western blot can be obtained.
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Incubation with primary antibody was greatly manipulated experimentally and this change
experiments. Additionally, future research should continue to test other compounds from the
library available in Manpadi lab. Differing times of incubation of these compounds may also be a
variable that can be changed to yield better results, as cells were incubated with compounds at a
In conclusion, the compound 11 did not show the same levels of inhibition of the
JAK-STAT pathway as plumbagin. There is not sufficient evidence to support this claim
plumbagin or it may inhibit another pathway, delivering anticancer effects. Other conditions
should be tried for proper compound analysis. The antibody concentrations may not have been
ideal, as the bands were not as clear as desired. This research cannot be concluded as final as
there is a wide breadth of research still able to be done. Future research is recommended to
Acknowledgements
I thank Dr. Madhuri Manpadi at Drury University for her patience, guidance, and
contributions over the course of the research; I thank Dr. Richard Schur for his support and
guidance; I thank Morgan Wallace and Zina Umran for their assistance during this project; I
thank Drury University for the opportunity to do purposeful and meaningful research in a field
that greatly interests me; And finally, I thank everybody who has encouraged and guided me
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