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Joebacterialcontamination
Joebacterialcontamination
Bioresource Technology
journal homepage: www.elsevier.com/locate/biortech
A R T I C L E I N F O A B S T R A C T
Keywords: Fuel ethanol fermentations are not performed under aseptic conditions and microbial contamination reduces
Fuel ethanol contamination yields and can lead to costly “stuck fermentations”. Antibiotics are commonly used to combat contaminants, but
Lactic acid bacteria these may persist in the distillers grains co-product. Among contaminants, it is known that certain strains of
lactic acid bacteria are capable of causing stuck fermentations, while other strains appear to be harmless.
However, it was not previously known whether or how these strains interact one with another. In this study,
more than 500 harmless strains of lactic acid bacteria were tested in a model system in combination with strains
that cause stuck fermentations. Among these harmless strains, a group of beneficial strains was identified that
restored ethanol production to near normal levels. Such beneficial strains may serve as an alternative approach
to the use of antibiotics in fuel ethanol production.
http://dx.doi.org/10.1016/j.biortech.2017.09.067
Received 18 July 2017; Received in revised form 7 September 2017; Accepted 8 September 2017
Available online 14 September 2017
0960-8524/ Published by Elsevier Ltd.
J.O. Rich et al. Bioresource Technology 247 (2018) 357–362
Model fermentations with mixtures of either beneficial or challenge 3. Results and discussion
strains were conducted as described above with inocula that contained
0.2 × 107 cells/mL of each strain to yield a total bacterial load LAB are Gram-positive, non-spore forming bacteria that are aero-
equivalent to 1 × 107 bacterial cells/mL. When a mixture of bacterial tolerant anaerobes (da Silva Sabo et al., 2014) and have a centuries-old
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Table 2
Impact of selected beneficial bacteria on corn mash fermentation by yeast challenged with Lactobacillus fermentum 0315-1.
Beneficial Strain Strain ID Challenge Strain Ethanol, g/L Residual Glucose, g/L Acetic Acid, g/L Lactic Acid, g/L
none unchallenged none 130 ± 0.86 < 2.00 < 1.25 < 2.00
none challenged 0315-1 105 ± 1.27 39.8 ± 1.84 3.62 ± 0.75 3.59 ± 0.91
Lb. plantarum 1010 5.22 0315-1 133 ± 0.27 < 2.00 < 1.25 6.24 ± 0.04
Lb. plantarum 1004 5.37 0315-1 133 ± 1.92 < 2.00 < 1.25 5.74 ± 0.06
Lb. plantarum 1010 5.35 0315-1 132 ± 4.25 < 2.00 2.81 ± 2.11 9.43 ± 4.25
Lb. plantarum 1010 5.29 0315-1 132 ± 3.36 < 2.00 3.10 ± 1.77 8.06 ± 0.87
Lb. casei 1004 6.20 0315-1 131 ± 0.74 < 2.00 < 1.25 9.35 ± 0.54
Lb. casei 1004 6.28 0315-1 131 ± 3.56 < 2.00 < 1.25 7.84 ± 0.08
Lb. plantarum 091028 5.46 0315-1 131 ± 0.79 < 2.00 1.77 ± 0.00 4.70 ± 0.05
Lb. amylolyticus 1008 5.21 0315-1 131 ± 1.30 < 2.00 1.99 ± 0.12 2.41 ± 0.19
Mixed 1003 8.46 0315-1 131 ± 0.34 < 2.00 < 1.25 7.06 ± 0.31
Lb. plantarum 1004 5.16 0315-1 130 ± 1.06 < 2.00 1.63 ± 0.07 3.98 ± 0.86
Lb. plantarum 1010 5.8 0315-1 130 ± 0.36 < 2.00 < 1.25 7.11 ± 0.64
Lb. plantarum 1010 6.22 0315-1 130 ± 4.63 < 2.00 1.85 ± 0.28 7.27 ± 0.02
Lb. plantarum 1010 5.38 0315-1 130 ± 3.11 < 2.00 < 1.25 8.77 ± 0.41
Lb. amylolyticus 1004 5.21 0315-1 129 ± 0.20 4.10 ± 1.03 1.83 ± 0.04 2.17 ± 0.09
Lb. plantarum 1001 6.4 0315-1 129 ± 3.08 < 2.00 1.47 ± 0.76 4.43 ± 4.43
Lb. plantarum 1004 5.12 0315-1 129 ± 2.47 < 2.00 < 1.25 6.19 ± 0.63
Lb. plantarum 1003 6.37 0315-1 129 ± 1.83 < 2.00 1.59 ± 0.07 4.47 ± 0.10
Mixed 1010 5.34 0315-1 129 ± 0.96 < 2.00 < 1.25 6.36 ± 0.02
Lb. plantarum 1003 8.24 0315-1 129 ± 1.74 < 2.00 < 1.25 4.09 ± 0.01
Lb. plantarum 1010 6.1 0315-1 129 ± 4.22 < 2.00 1.29 ± 0.03 7.32 ± 0.82
Lb. plantarum 1107 5.2 0315-1 129 ± 4.77 < 2.00 < 1.25 5.97 ± 0.19
Lb. plantarum 1001 5.12 0315-1 129 ± 0.12 < 2.00 1.45 ± 0.03 4.76 ± 0.10
Lb. plantarum 1101 5.22 0315-1 128 ± 1.05 < 2.00 1.94 ± 0.06 4.09 ± 0.03
Lb. pontis 1004 5.35 0315-1 128 ± 2.18 4.70 ± 4.70 2.01 ± 0.10 2.13 ± 0.26
Lb. plantarum 1101 5.41 0315-1 128 ± 1.10 < 2.00 1.54 ± 0.06 5.98 ± 0.35
Lb. plantarum 090929 5.33 0315-1 128 ± 0.14 < 2.00 1.76 ± 0.01 7.90 ± 0.09
history of food preservation (Yang et al., 2012). LAB are well known to evaluate as possible beneficial bacteria that could outcompete deleter-
employ antimicrobial peptides to outcompete related species of LAB ious strains.
(Zacharof and Lovitt, 2012). The narrow antimicrobial specificities of A stuck fermentation model with Lb. fermentum 0315-1 as the pro-
these bacteriocins have made them valuable food preservatives (da totypical challenge strain has been used to assess the impact of bacterial
Silva Sabo et al., 2014), and they have potential in controlling bacterial contamination on yeast fermentation of corn mash (Bischoff et al., 2009;
contamination in fuel ethanol production (Liu and Summer, 2014). Rich et al., 2015). Lb. fermentum 0315-1 has been a reliable challenge to
The impact of several hundred bacterial contaminants isolated from yeast production of ethanol from corn mash, showing decreased ethanol
industrial fuel ethanol fermentations on yeast production of ethanol production and glucose consumption. In this screen, over 500 strains that
from corn mash has recently been reported (Rich et al., 2015). This were previously shown to have little or no impact on yeast were tested in
screen revealed obligately heterofermentative lactic acid bacteria (LAB) combination with the Lb. fermentum 0315-1 challenge. Interestingly, this
were the most inhibitory, and the inhibition was correlated with acetic revealed these potentially beneficial microbes fell into three categories
acid production. However, several hundred strains appeared to have (Fig. 1). 145 of the potentially beneficial microbes actually exacerbated
little effect on yeast ethanol production, and we selected 516 of these to the Lb. fermentum 0315-1 challenge (Table 1), resulting in decreased
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Fig. 2. Changes in acetic acid (A) and lactic acid (B) levels do not
appear to directly relate to ethanol production in corn mash fermen-
tations infected with Lactobacillus fermentum 0315-1 treated with po-
tentially beneficial lactic acid bacteria. The baseline ethanol and
acetic acid levels of the no challenge (solid lines) and challenge (da-
shed lines) controls are highlighted. The no challenge control had
130 g/L, < 1.25 g/L and < 2.00 g/L of ethanol, acetic acid and lactic
acid, respectively. The challenge control had 105 g/L, 3.62 g/L and
3.59 g/L of ethanol, acetic acid and lactic acid, respectively. All results
are normalized to the challenge control.
ethanol production as compared to the Lb. fermentum 0315-1 challenge Acetic acid production by obligately heterofermentative LAB is
alone (the 0315-1 challenge axis in Fig. 1). correlated with stuck fermentations (Rich et al., 2015). In this screen
Another group of these potentially beneficial microbes was over 300 with yeast combined with pairs of bacterial contaminants, a challenge
strains that partly restored ethanol production in yeast challenged with strain and a potentially beneficial strain, we observed that there was no
Lb. fermentum 0315-1 (Table 1). This category was certainly the most relationship between acetic or lactic acid and ethanol production under
prevalent, and suggests that many of LAB have benefit in the communal the employed conditions (Fig. 2). This begins to highlight the com-
health of the industrial fermentation. plexity of mixed culture systems, and certainly could raise questions
The final group of 26 strains restored ethanol production to near the about the utility of monitoring organic acid concentrations as an in-
unchallenged level (Fig. 1 and Table 2). Most of the beneficial strains dicator of problematic bacterial infections. It is clear from Fig. 2a that
(73%) were identified as Lb. plantarum, although this species comprised the majority of infected reactions show increased acetic acid produc-
51% of the strains evaluated in this screen. Lb. casei and Lb. pontis were tion; although it also does not clearly show that increased acetic acid
also amongst the most beneficial, along with some mixtures and two concentration has a negative impact on the production of ethanol.
unidentified strains. It is interesting to note that all of the LAB species Furthermore, contamination with LAB does result in increased lactic
that had more than 20 tested were divided amongst the three cate- acid levels, although there is not a correlation between lactic acid and
gories. There does not appear to be a universal beneficial or deleterious ethanol production (Fig. 2b). Both acetic acid (Fig. 2a) and lactic acid
species when used in mixed culture, rather the benefit or challenge (Fig. 2b) levels were increased from the unchallenged fermentation in
appears to be strain specific. nearly all of the challenge reactions, including in those reactions with
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Table 3
Impact of treatment with beneficial bacteria on the production of ethanol by yeast challenged by various bacterial challenge strains.
None Lb. plantarum Lb. plantarum Lb. casei Lb. pontis Lb. amylovorus Mix Ba
Strain ID – 1101 5.22 1010 5.22 1004 6.20 1004 5.35 1101 7.24 –
None – 130 ± 0.86 129 ± 4.3 129 ± 0.06 125 ± 7.7 126 ± 2.1 129 ± 6.0 127 ± 1.2
Lb. fermentum 0315-1 105 ± 1.27 136 ± 2.6 133 ± 0.27 131 ± 0.74 128 ± 2.2 127 ± 0.63 128 ± 0.0
Lb. fermentum 1001 5.32 111 ± 6.1 124 ± 4.9 126 ± 1.2 123 ± 1.9 123 ± 5.0 122 ± 5.0 125 ± 1.3
Lb. plantarum 1101 7.25 114 ± 12 121 ± 7.8 120 ± 8.2 123 ± 4.6 122 ± 2.0 128 ± 3.4 127 ± 1.6
Lb. brevis 1101 5.1 114 ± 0.64 128 ± 0.93 128 ± 4.3 122 ± 1.2 125 ± 1.9 124 ± 1.7 123 ± 1.4
Lb. mucosae 1101 7.7 93.5 ± 0.91 124 ± 3.2 116 ± 3.5 120 ± 4.7 123 ± 3.1 103 ± 7.3 129 ± 3.3
Lb. casei 091009 7.3 117 ± 0.40 126 ± 0.19 125 ± 1.6 120 ± 5.3 123 ± 2.0 123 ± 1.8 129 ± 0.4
Mix Cb – 104 ± 0.8 126 ± 2.5 119 ± 2.1 123 ± 0.8 120 ± 8.2 119 ± 2.8 129 ± 1.3
a
Mix B is a mixture of selected beneficial strains Lb. plantarum (1101 5.22 and 1010 5.22), Lb. casei (1004 6.20), Lb. pontis (1004 5.35) and Lb. amylovorus (1101 7.24).
b
Mix C is a mixture of challenge strains Lb. fermentum (1001 5.32), Lb. plantarum (1101 7.25), Lb. brevis (1101 5.1), Lb. mucosae (1101 7.7) and Lb. casei (091009 7.3).
the most beneficial strains (Table 2). production in the presence of a mixture of challengers.
Not surprisingly, decreasing glucose consumption results in de-
creasing ethanol production (Fig. 3). Treatment with several of the most 4. Conclusions
beneficial strains enabled the complete utilization of glucose after 72 h
(Table 2). However, when the culture uses less glucose (for whatever Routine inoculation of beneficial bacteria may serve to control the
reason), less ethanol is produced by the yeast. It may be that glucose growth and minimize the impact of more deleterious bacterial con-
consumption is a more reliable monitor of fermentation health than taminants and could provide an economically acceptable strategy for
organic acid concentration. industrial control of microbial contamination (Brexó and Sant’Ana,
Lactic acid bacteria are well known to produce peptides/proteins 2017). Furthermore, such treatment could lead to the reduction or
that possess antimicrobial activity (Zacharof and Lovitt, 2012; da Silva elimination of antibiotics currently used to control microbial con-
Sabo et al., 2014). These bacteriocins have biological activity targeted tamination in the industry, and also help address the growing concern
at specific related microbes (Zacharof and Lovitt, 2012) and have great of antimicrobial resistance. Therefore, beneficial bacteria may offer
potential in food preservation (Perez et al., 2014) and industrial fer- producers an alternative to antibiotics for control of unwanted bacterial
mentations (Liu and Summer, 2014). Lb. plantarum is a known producer contamination.
of bacteriocins (da Silva Sabo et al., 2014), and could serve as a source
of novel antimicrobial compounds to combat bacterial infections of fuel Acknowledgements
ethanol fermentations.
In order to further confirm the utility of this approach, five of the The authors would like to acknowledge the excellent technical
top beneficial microbes from different species were tested against five support of Mr. Eric Hoecker. We would also like to honor the memory of
additional challenge strains identified from our previous study (Rich Dr. Ken Bischoff, our dear friend, colleague, and co-author, who re-
et al., 2015). In all cases, the yeast in the presence of beneficial strains cently passed away after a lengthy illness. He will be greatly missed.
had improved ethanol production as compared to the challenge
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