Professional Documents
Culture Documents
Friday Morning - Lab3 - Group4 - Report
Friday Morning - Lab3 - Group4 - Report
Friday Morning - Lab3 - Group4 - Report
REPORT FOR
LABORATORY
GROUP 4
Page 1 of 40
REPORT FOR LABORATORY
ENZYMES – UNDERSTAND HOW ENZYMES WORK
TABLE OF CONTENTS
I. INTRODUCTION 4
A. PERPOSE 4
B. ENZYMES 5
1. Overview 5
2. Function 5
3. Mechanism of action 6
4. Special characteristics 7
C. THE EFFECT OF BROMELAIN ON GELATION OF GELATIN 8
1. Overview 8
a) Bromelain 8
b) Gelatin 9
2. The effect of bromelain on gelation of gelatin 9
II. CONTENT 10
1. The effect of bromelain on gelation of gelatin 10
a) Materials 10
b) Equipment 10
c) Procedure 10
2. The effect of temperature on bromelain’s activity 12
a) Materials 12
b) Equipment 12
c) Procedure 12
3. The effect of pH level on bromelain’s activity 14
a) Materials 14
b) Equipment 14
c) Procedure 14
III. ANSWERING QUESTION 17
1. QUESTION 1 17
2. QUESTION 2 23
3. QUESTION 3 30
IV. CONCLUSION 33
V. REFERENCES 34
Page 2 of 40
REPORT FOR LABORATORY
ENZYMES – UNDERSTAND HOW ENZYMES WORK
TABLE OF FIGURATION
Page 3 of 40
REPORT FOR LABORATORY
ENZYMES – UNDERSTAND HOW ENZYMES WORK
I. INTRODUCTION
A. PURPOSE
Page 4 of 40
REPORT FOR LABORATORY
ENZYMES – UNDERSTAND HOW ENZYMES WORK
Figure 3: Bromelain.
Page 5 of 40
REPORT FOR LABORATORY
ENZYMES – UNDERSTAND HOW ENZYMES WORK
B. ENZYMES
1. Overview:
Enzymes are composed of proteins folded into complex shapes; they are
present throughout parts the body. Playing role as biological catalysts, they can
help speed up (catalyze) metabolism, or the chemical reactions faster one million
of times in our bodies than it would have been without it. They build some
substances and break others down. All living things have enzymes. Our bodies
naturally produce enzymes. But enzymes are also presenting in manufactured
products and food. A substrate binds to the active site of an enzyme and is
converted into product. Once the products leave the active site, the enzyme is
ready to attach to a new substrate and repeat the process.
2. Function:
The digestive system: enzymes help the body break down larger complicated
molecules into smaller molecules, such as glucose, so that the body can use them
as energy.
Example: Amylase and other carbohydrase enzymes break down starch into
sugar or Lipase enzymes break down lipids (fats and oils) into fatty acids and
glycerol.
DNA replication: each cell in your body contains DNA. When a cell is dividing,
DNA needs to be copied. Enzymes help in this process by unwinding the DNA coils
and copying the information.
Example: DNA polymerase synthesizes the new DNA strand; also proofreads
and corrects some errors or Primase provides the starting point for DNA
polymerase to begin synthesis of the new strand.
Liver enzymes: the liver breaks down toxins in the body. To do this, it uses a
range of enzymes.
Example: Alkaline phosphatase (ALP), Alanine transaminase (ALT).
Enzyme can also help with building muscle, breathing, and nerve function.
Page 6 of 40
REPORT FOR LABORATORY
ENZYMES – UNDERSTAND HOW ENZYMES WORK
3. Mechanism of action:
The “lock and key” model was first proposed in 1894 by Emil Fischer. In this
model, an enzyme’s active site is a specific shape, and only the substrate will fit
into it, like a lock and key. This early model explains enzyme specificity but fails to
explain the stabilization of the transition state that enzymes achieve.
This model has now been updated and is called the induced-fit model –
proposed by Daniel Koshland in 1958. In this new model, Daniel Koshland
supposed that the active site changes shape as it interacts with the substrate. The
substrate does not simply bind to a rigid active site; the amino acid side - chains
that make up the active site are molded into the precise positions that enable the
enzyme to perform its catalytic function. Once the substrate is fully locked in and
in the exact position, the catalysis can begin.
Page 7 of 40
REPORT FOR LABORATORY
ENZYMES – UNDERSTAND HOW ENZYMES WORK
4. Special characteristic:
Active site contains 3 to 12 amino acids and less hydrophobic amino acids.
Sensitive to temperature, pH level, and substrate concentration.
Enzymes are larger than substrates.
Lower the activation energy.
Required in very less amount compared to chemical catalysts.
Produces products using specific substrate.
Some are globular proteins, and few are RNA – based molecules.
Can be recycled or reused.
Forms an enzyme-substrate complex.
Function can be inhibited by inhibitors.
Enzymes are both intracellular and extracellular catalysts.
Some enzymes need coenzymes or cofactors.
Page 8 of 40
REPORT FOR LABORATORY
ENZYMES – UNDERSTAND HOW ENZYMES WORK
C. THE EFFECT OF BROMELAIN ON GELATION OF GELATIN
1. Overview:
a) Bromelain:
Bromelain is a proteolytic enzyme derived from the stem, fruit, and juice of the
pineapple plant that has protein-digesting properties.
Bromelain may be used alone or in conjunction with other medications. People
use bromelain topically, to remove dead skin from burns, and orally, to reduce
inflammation and swelling — particularly of the nasal passages.
Bromelain is also used as a digestive aid, for osteoarthritis, and to reduce
soreness in aching muscles.
Page 9 of 40
REPORT FOR LABORATORY
ENZYMES – UNDERSTAND HOW ENZYMES WORK
b) Gelatin:
Gelatin is produced from the partial hydrolysis of collagen.
Collagen is the most abundant protein in the body. It is a key structural
component in many of our tissues, including our tendons and our bones.
Page 10 of 40
REPORT FOR LABORATORY
ENZYMES – UNDERSTAND HOW ENZYMES WORK
II. CONTENT
b) Equipment:
Pipette (3ml): 3 pieces.
Beaker: 1 piece.
Test tube: 3 pieces.
Test tube rack: 1 piece.
c) Procedure:
Step 1: Prepare and label 3 test tubes as “Water”, “Fresh”, and “Canned”.
Step 2: Mix power gelatin with 50ml water in the beaker. After that, heat and
continuously stir the mixture at the appropriate temperature for 2 minutes.
Step 3: To each of the three test tubes, add warm gelatin.
Step 4: Use 3 separate pipettes to add 2ml of water, 2ml of fresh pineapple
juice, and 2ml of canned pineapple juice into the 3 pre-marked test tubes
(“Water”, “Fresh”, and “Canned”), stir the solutions in the test tube.
Step 5: Soak the test tubes in ice water for 5 to 10 minutes. Carefully observe
what happens in the test tube marked "Water" and compare the results with
the other 2 test tubes. After all, record the results in the notebook.
Step 6: Keep laboratory equipment and laboratory clean.
Page 11 of 40
REPORT FOR LABORATORY
ENZYMES – UNDERSTAND HOW ENZYMES WORK
THE EFFECT OF BROMELAIN ON GELATION OF GELATIN
TESTTUBE RESULT EXPLAIN
Gelatin solidifies
Page 12 of 40
REPORT FOR LABORATORY
ENZYMES – UNDERSTAND HOW ENZYMES WORK
2. The effect of temperature on Bromelain’s activity:
a) Materials:
Distilled water: 55ml.
Fresh pineapple juice: 3ml.
Power gelatin: 1 package.
b) Equipment:
Pipette (3ml): 3 pieces.
Beaker: 1 piece.
Test tube: 3 pieces.
Test tube rack: 1 piece.
c) Procedure:
Step 1: Prepare and label test tube as “Water”, “Hot”, and “Cool”.
Step 2: Mix power gelatin with 50ml water in the beaker. After that, heat and
continuously stir the mixture at the appropriate temperature for 2 minutes.
Step 3: Add 2ml of water to the test tube was labeled “Water” and put in the
test tube rack.
Step 4: Add 2ml of fresh pineapple juice to the test tube was labeled “Cool”
and “Hot”, placed these test tubes in temperature room.
Step 5: Placed the test tube labeled “Hot” into a 70°C water bath for 5
minutes.
Step 6: After 5 minutes, carefully removed the test tube labeled “Hot” from
water bath.
Step 7: Add 3ml of warm gelatin to each test tube and then place three test
tubes in ice until the test tube labeled “Water” is solidified.
Step 8: Observe three test tubes, record the result of three test tubes.
Step 9: Keep laboratory equipment and laboratory clean.
Page 13 of 40
REPORT FOR LABORATORY
ENZYMES – UNDERSTAND HOW ENZYMES WORK
Gelatin solidifies.
Page 14 of 40
REPORT FOR LABORATORY
ENZYMES – UNDERSTAND HOW ENZYMES WORK
3. The effect of pH level on Bromelain’s activity:
a) Materials:
HCl (Acidic solution with low pH).
NaOH (Alkaline solution with high pH).
Gelatin solution.
Fresh pineapple juice.
Distilled water.
c) Procedure:
Step 1: First, we prepare and label test tubes number 1-6.
Step 2: Then, the pipettes were then carefully inserted into the test tubes by
the pipettes, respectively.
Test tube number 1: 2 mL of water.
Test tube number 2: 2 mL of fresh pineapple juice.
Test tube number 3: 1 mL HCl and 1 mL fresh pineapple juice.
Test tube number 4: 1 mL HCl and 1 mL water.
Test tube number 5: 1 mL NaOH and 1 mL fresh pineapple juice.
Test tube number 6: 1 mL NaOH and 1 mL water.
Step 3: Next, to mix the ingredients together in the test tube, shake gently
(around 3 minutes) and except for the gelatin tube.
Page 15 of 40
REPORT FOR LABORATORY
ENZYMES – UNDERSTAND HOW ENZYMES WORK
Step 4: After adding 3 mL of gelatin to each test tube and a test tube labeled
with "gelatin".
Step 5: Additionally, place all six test tubes in the ice bath and also the gelatin
test tubes until the "gelatin" tubes begin to solidify.
Step 6: At least the end of observing the test tubes and recording our results.
Before the end of class, we have cleaned laboratory equipment and labs in
accordance with regulations.
Page 16 of 40
REPORT FOR LABORATORY
ENZYMES – UNDERSTAND HOW ENZYMES WORK
Since the concentration alkaline of NaOH has
Invariable been diluted by water, it solidifies easily at low
1 mL NaOH and 1 mL water
temperatures.
Page 17 of 40
REPORT FOR LABORATORY
ENZYMES – UNDERSTAND HOW ENZYMES WORK
QUESTION 1:
a) What is the activation energy of a reaction? What are
catalysts?
a.1) The activation energy of a reaction:
Firstly, the definition of "activation energy" is the smallest amount of
energy required to initiate a chemical reaction in chemistry and physics. In other
words, it is an energy barrier to a reaction. Additionally, it is denoted by Ea and
also it is expressed (unit) in kJ/mol. Moreover, activation energy is related to the
response rate so, slower reactions have greater activation energy, while quicker
reactions have lower activation energies. In fact, burning dry wood releases a lot
of energy, but firewood does not suddenly burst into flames. It only starts the
burning process when supplied with sufficient activation energy, and the
activation energy can be provided by a lighter.
Page 18 of 40
REPORT FOR LABORATORY
ENZYMES – UNDERSTAND HOW ENZYMES WORK
a.2) Catalysts:
In science, a catalyst is defined as any material that increases the speed of a
process without it being consumed or permanently altered by the reaction. The
catalyst speeds up the process by reducing the activation energy. Especially, they
do not affect altering the chemical equilibrium between reactants and products.
In biology, enzymes are naturally occurring catalysts responsible for many
essential biochemical reactions, they speed up the rate of chemical reactions in a
cell or outside a cell.
In life, when we chew rice (rice has a very high starch content), salivary
amylase enzymes are secreted to hydrolyze polysaccharides and oligosaccharides
into monosaccharides. This is an ingredient that can be absorbed by the body.
However, the efficiency of salivary amylase activity is not as high as that of
pancreatic amylase, so pancreatic amylase activity in the small intestine is more
important. After amylase enzymes hydrolyze starch, the products formed are
glucose, maltose, maltotriose, and α - destrins.
Page 19 of 40
REPORT FOR LABORATORY
ENZYMES – UNDERSTAND HOW ENZYMES WORK
b) How does enzyme, in general, work? What is it application in
the field of BME?
b.1) How does enzyme work?
Enzymes are ubiquitous in the body and are made up of protein folds with
complex shapes. Enzymes are biological catalysts that help speed up the process
of chemical reactions. Additionally, they create the right conditions for molecules
to collide, so activation energy is reduced, and chemical reactions occur faster. In
during work, the active site position of the enzyme will be adapted to the
substrate when interacting with each other. The catalysis just begin after the
substrate is fully locked and in the correct position. After that, the product is
formed and leave the active site, so the enzyme has completed its work cycle and
is ready to bind to a new substrate and start working again.
Page 20 of 40
REPORT FOR LABORATORY
ENZYMES – UNDERSTAND HOW ENZYMES WORK
Page 21 of 40
REPORT FOR LABORATORY
ENZYMES – UNDERSTAND HOW ENZYMES WORK
b.2) Enzyme’s application in the field of BME:
The first reason why biomedical engineers applied enzymes in machines,
drug manufacturing, and laboratories rooted in enzymes exist in all forms of life,
including people, plants, bacteria, and other species, and may thus be found
anywhere. Enzymes are required for the normal functioning of any living body.
Enzymes are catalyst naturally occurring proteins whose role is to accelerate and
improve the efficiency of a chemical reaction itself without being consumed in the
process. In other words, they catalyze a wide range of chemical processes
involved in growth, blood coagulation, healing, sickness, breathing, digestion,
reproduction, and a variety of other biological functions. Enzymes are the
biologically important catalysts that perform a variety of tasks in living beings.
Because enzymes have numerous advantages, biomedical engineering major has
applied them in medical devices to assist doctors in detecting and treating
illnesses. In fact, the machines with enzyme technology applications that have
been put into medical use today are machines enzymes immunoassay analyzer
(CLIA), the enzyme-linked immunosorbent assay (ELISA), etc.
Machines enzymes immunoassay analyzer (CLIA) is used to estimate
analytes that have extremely low concentrations in the blood such as
hormones, serological markers, and drugs.
The role enzymes are enzyme-specific substrate producing a
detectable signal in this test, they are labeled with antibodies
before reacting with antigen, which is mainly a change in the color of
the substrate.
Page 22 of 40
REPORT FOR LABORATORY
ENZYMES – UNDERSTAND HOW ENZYMES WORK
Page 23 of 40
REPORT FOR LABORATORY
ENZYMES – UNDERSTAND HOW ENZYMES WORK
Page 24 of 40
REPORT FOR LABORATORY
ENZYMES – UNDERSTAND HOW ENZYMES WORK
Page 25 of 40
REPORT FOR LABORATORY
ENZYMES – UNDERSTAND HOW ENZYMES WORK
2.1. Factors affecting enzymes activity:
The conditions used to assess an enzyme's activity would not be the same
as those chosen to measure the concentration of its substrate. There are five
types of factors that affect the rate at which enzymatic reactions proceed with
enzymes concentration, substrate concentration, inhibitors, pH, and temperature.
In addition, enzymes function best in specified temperature and pH ranges, thus,
when the allowable conditions are exceeded, the enzymes lose their ability to
bind to the substrate.
Page 26 of 40
REPORT FOR LABORATORY
ENZYMES – UNDERSTAND HOW ENZYMES WORK
Finally, chemicals that change the catalytic function of an enzyme,
slowing down or possibly ending the catalytic process are enzyme
inhibitors. Based on the mechanism of action of inhibitors, enzyme
inhibition is classified into three groups such as competitive, non-
competitive, and substrate inhibition.
Figure 20: Flowchart showing the mechanism of action of three enzyme inhibitors.
Page 27 of 40
REPORT FOR LABORATORY
ENZYMES – UNDERSTAND HOW ENZYMES WORK
stirring rod, fresh pineapple juice, gelatin powder, a beaker, a thermometer, a
ruler, a razor, an electronic balance, and a water bath.
Step 1: The next step is preparation phase, place the gelatin and hot water
into a 250mL beaker and mix with a stirring rod until gelatin has dissolved,
then allow the gelatin to set in the cool room for a day and prepare before
one day begins this experiment.
Step 2: Then label the test tubes from 1-5.
Step 3: After that, cut gelatin becomes ten-part with 1.0 x 1.0 cm cubes by
using a razor blade and recording the weight of each cube into the record
table after weighing.
Step 4: In addition, adding 10 ml of fresh pineapple juice into each test
tube. Moreover, take test tubes 1-5 and heat them in a water bath for 10
minutes, at 35oC, 45oC, 50oC, 60oC, and 90oC, respectively.
Step 5: Next is to put tube "1" on the rack after taking it out of the pot and
letting this test tube cool to room temperature by using a thermometer.
Step 6: And also placing four test tubes from 2-5 in a bucket of crushed ice
may quicken the cooling process.
Step 7: Place allocated cubes of gelatin into respective tubes and allow to
sit for 20 minutes.
Step 8: Allow the gelatin capsules to dry completely after separating the
gelatin capsules from the juice in the test tubes and rinsing them with
distilled water.
Step 9: Finally, record their mass data and clean up the lab according to the
standards.
Page 28 of 40
REPORT FOR LABORATORY
ENZYMES – UNDERSTAND HOW ENZYMES WORK
RESULT TABLE
TEST
TEMPERATURE (OC) INITIAL WEIGHT (g) FINAL WEIGHT (g) WEIGHT LOSS (g)
TUBE
Figure 21: The result graph - Effect of temperature on enzymatic functioning in bromelain.
Page 29 of 40
REPORT FOR LABORATORY
ENZYMES – UNDERSTAND HOW ENZYMES WORK
In conclusion, the results show that an increase in temperature applied to
the juice corresponds to a decrease in enzyme activity as described by the mass
loss of gelatin mass. This trend is illustrated in the chart and result table above. In
other words, the results of the above experiment support the theory that
temperature affects enzyme activity.
Page 30 of 40
REPORT FOR LABORATORY
ENZYMES – UNDERSTAND HOW ENZYMES WORK
Step 4: Next, to mix the ingredients together in the test tube, shake gently
(~3 minutes) and except for the gelatin tube.
Step 5: After adding 3 mL of gelatin to each test tube and a test tube
labeled with "gelatin".
Step 6: Additionally, place all six test tubes in the ice bath and also the
gelatin test tubes until the "gelatin" tubes begin to solidify.
Step 7: At least the end of observing the test tubes and recording our
results. Before the end of class, we have cleaned laboratory equipment and
labs in accordance with regulations.
Page 31 of 40
REPORT FOR LABORATORY
ENZYMES – UNDERSTAND HOW ENZYMES WORK
QUESTION 3:
a) The experiment illustrates the activity of amylase enzyme:
Material:
Starch solution: 10ml.
Amylase solution.
Iodine reagent.
Equipment:
Pipette; Beaker; Spotting tiles; Cylinder.
Procedure:
Step 1: Prepare and label spotting tiles 1 minute apart.
Step 2: Put a few drops of starch solution on the dimples labeled as “0
minute”, then use Iodine reagent and see the starch turns blue-black.
Hence, we know that the solution contains starch.
Step 3: Measure by cylinder and put 10ml of starch solution into the test
tube.
Page 32 of 40
REPORT FOR LABORATORY
ENZYMES – UNDERSTAND HOW ENZYMES WORK
Step 4: Place the test tube containing starch solution in warm water (37
Celsius degree which the Amylase enzyme wok well) for 2 minutes. After
that, add 2ml of Amylase solution into this test tube.
Step 5: Every 1 minute, use a pipette to take a little of the solution in the
test tube into the previously marked spotting tiles which contain the iodine
reagent and watch the reaction happen.
Step 6: If a blue-black color appears, the starch solution will not be digested
by the Amylase enzyme. However, this solution is not a blue- black color,
the experiment has proven that the enzyme amylase breaks down starch
into simple sugars.
Step 7: Record result and keep laboratory and equipment clean.
In this experiment, negative control is step 2, we can use this result to
compare the color of other following experiments. Positive control is the
experiment at the 45th minute.
Page 33 of 40
REPORT FOR LABORATORY
ENZYMES – UNDERSTAND HOW ENZYMES WORK
Iodine reagent.
Distilled water.
Equipment:
Test tube; Test tube rack; A permanent marked; A Bunsen burner; Tripod;
Gauze mat; Beaker; Thermometer; Spotting tiles; Pipette; Stopwatch; Ice.
Procedure:
Step 1: Set up the water path stations add the water and the ice, turn on
the Bunsen burner, and wait until the water reaches the following
temperatures: 0oC, 20oC, 40oC, 60oC, 80oC.
Step 2: Place test tube in test tube racks, label the test tubes as “Starch”,
“Amylase” (5 pairs of test tubes).
Step 3: Add 5ml of starch solution into the “Starch” test tube and add 5ml
of Amylase into the “Amylase” test tube.
Step 6: We put each pair of test tubes respectively "Starch" and "Amylase"
into each water bath corresponding to each temperature and wait a few
minutes.
Step 7: During this time, we have dropped Iodine reagent to each spot on
the tile. After a few minutes combine the two solutions then use the
pipette to remove a drop of the Amylase and starch solution and place the
drop into Iodine.
Step 8: Observe the color drop initially and add a new drop every 30
seconds until there is no color change. Repeat steps for each temperature.
Step 9: Record result in notebook. Keep the laboratory and equipment
clean.
Experiments show that increasing the temperature increases the rate of
enzyme reaction (but the temperature should not be too high, amylase
enzyme works well at 37oC). Meanwhile, cold temperatures will slow
down the enzyme's reaction rate.
Page 34 of 40
REPORT FOR LABORATORY
ENZYMES – UNDERSTAND HOW ENZYMES WORK
Page 35 of 40
REPORT FOR LABORATORY
ENZYMES – UNDERSTAND HOW ENZYMES WORK
IV. CONCLUSION
Page 36 of 40
REPORT FOR LABORATORY
ENZYMES – UNDERSTAND HOW ENZYMES WORK
V. REFERENCE
https://chembam.com/resources-for-students/the-chemistry-of/
gelatin/
https://prezi.com/qlfq4g1fthyq/the-effect-of-bromelain-on-gelatin/
https://www.healthline.com/nutrition/pineapple-juice-benefits#1
https://www.youtube.com/watch?v=5lQbl_t2k3c&t=19s
https://drcuaban.com/bromelain/
https://www.biologyonline.com/dictionary/coenzyme
https://explore.globalhealing.com/what-are-coenzymes/
https://www.scientificamerican.com/article/exploring-enzymes/
https://en.wikipedia.org/wiki/Enzyme#/media/
File:Hexokinase_induced_fit.svg
https://my.clevelandclinic.org/health/symptoms/17679-elevated-liver-
enzymes
https://proteopedia.org/wiki/index.php/Bromelain
https://www.sciencedirect.com/topics/medicine-and-dentistry/pepsin-
a
https://www.medicalnewstoday.com/articles/319704#how-enzymes-
work
https://my.clevelandclinic.org/health/articles/21532-enzymes
https://youtu.be/FV7wDSggO_0 (Exercise 3b)
Page 37 of 40
REPORT FOR LABORATORY
ENZYMES – UNDERSTAND HOW ENZYMES WORK
https://youtu.be/kquaf6GPhpc (Exercise 3a)
https://youtu.be/OEwOYzWT8AI (Experiment 1)
https://youtu.be/5lQbl_t2k3c (Experiment 2)
https://www.khanacademy.org/science/ap-biology/cellular-
energetics/enzyme-structure-and-catalysis/a/activation-energy
https://www.livescience.com/45145-how-do-enzymes-work.html
Enzymes braking down food into nutrients Vector Image
(vectorstock.com)
https://www.medicalnewstoday.com/articles/319704#how-enzymes-
work
Enzyme Immunoassay - an overview | ScienceDirect Topics
An_Introduction_to_ENZYMES_122019-v6.pdf (worthington-
biochem.com)
https://www.ukessays.com/essays/sciences/enzymatic-functioning-
bromelain-pineapple-4509.php
Page 38 of 40
REPORT FOR LABORATORY
ENZYMES – UNDERSTAND HOW ENZYMES WORK
POINT FEEDBACK
Page 39 of 40
REPORT FOR LABORATORY
ENZYMES – UNDERSTAND HOW ENZYMES WORK
Page 40 of 40