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Pi Is 0022030298701523
An Applied Perspective
A. J. WEBB
Cotswold Pig Development Company Limited,
Market Rasen, Lincs., LN7 6BJ, United Kingdom
computer "learns" to predict genetic merit from vast TABLE 2. Performance of Meishan pigs in United Kingdom
studies.l
quantities of data over many generations (22).
Large
Trait White Meishan F 1 Cross
MEISHAN BREED
Born alive, no. 9.8 13.2 13.8
Although a few parent gilts containing Meishan Ovulation rate 14.9 18.9 17.7
traits appeared on the market in the early 1990s, the Prenatal survival, % 66 71 78
Piglet birth weight, kg 1.28 0.93 1.20
promise of a commercial boost to litter productivity Teats, no. 14.2 17.3 16.3
has not yet been realized. The reason is that the large Growth rates, g/d 801 500 711
advantages in litter size are finely balanced with Feed conversion ratio 2.49 3.37 2.76
P2 fat,2 mm 8.5 22.5 15.3
equally large disadvantages in growth and carcass Slaughter weight, % 75.7 75.9 75.0
value. Research consistently shows differences of 4 Carcass length 732 701 721
piglets born alive per litter between Meishan and Eye muscle area, cm 2 35.6 20.2 28.0
European breeds; Meishan have advantages in both lFrom work of E. D'Agaro and M. Ellis, cited by Webb (23).
ovulation rate and embryo survival (Table 2) and 2p2 = Ultrasonic fat depth 6.5 cm off the midline at the last rib.
reach puberty at around 3 mo of age. Crosses inherit
the Meishan advantage as a uterine trait rather than
a fetal trait and show very high levels of heterosis.
Selection in pure Meishan pigs is expensive and is
complicated by the early sexual activity of males and in crosses of Min and Taihu types (25). Strangely
the difficulty of ultrasonic measurement of backfat. disappointing is the lack of success in identification of
The solution has been to select for LTGR while at- the mechanism for the superiority of Taihu. Appar-
tempting to retain the litter size advantage in a com- ently, no single physiological switch is involved. A
posite line containing both Meishan and European recent report shows a smaller placenta per unit of
pigs. At Cotswold, one such line has already under- uterine space in the Meishan breed, together with
gone seven generations of selection. The resulting reduced embryonic estrogen production, allowing
25% Meishan parent gilts show around 1.6 extra live greater embryo survival (24).
piglets per litter, and their 12.5% Meishan slaughter
progeny have approximately 1.3-mm extra backfat at EFFICIENT LTGR
92 kg of live weight. This backfat can be removed by
Heritabilities and heterosis of growth and quality
mating the female pig to an ultralean terminal sire or
components are shown in Table 3. Unlike sow produc-
by restricting nutrient intake. Even so, the following
tivity, LTGR traits have high heritabilities and low
potential problems remain to be solved:
heterosis and are easy to measure. Growth rate of
• difficulty in maintaining the Meishan advantage pigs fed for ad libitum intake is favorably correlated
at later parities (which may be solved by correct (0.5) with feed conversion, but unfavorably cor-
feeding), related (0.2) with lean percentage. The quality traits
• reduced killing out percentage, have lower heritabilities, partly because of poor ac-
• adverse distribution of lean and consequential curacy of measurement; heterosis levels are not well
lower carcass value, and estimated, but are assumed to be low. Heritabilities
• increased risk of boar taint because of earlier may well have been overestimated in the past be-
puberty. cause of the presence of the halothane gene, which
caused increased genetic variation among sire fami-
At Cotswold, the carcass value of 12.5% Meishan lies.
pigs was about 3% lower than current commercial Past selection using a simple performance test of
slaughter generation. Females containing Meishan growth rate and ultrasonic backfat from roughly 30 to
genetics appear to be very docile, and, for markets 100 kg has been highly effective. For example, in
with a low investment in buildings and less concern Canada, the annual genetic trends over the past 20 yr
over lean yield, Meishan crosses may well find accep- have been 1.4% for backfat and 0.4% for growth rate
tance within 5 yr. (9). It is well recognized that this selection can take
Other related Taihu strains from the same Shan- one of two routes: increased daily LTGR, with little
ghai region (Fengjing, Jiaxing, and Erhualien) show change in daily fat deposition, or decreased daily fat
similar characteristics. The Min from North China deposition through a reduction in daily feed intake,
also appears to have high litter size but possibly via with little change in daily LTGR (6).
another physiological route. Research in the US Selection programs that have placed heavy empha-
shows useful heterosis taking litter size even higher sis on low backfat and feed conversion at the expense
TABLE 4. Responses to four generations of selection for lean tissue growth rate (LTGR), lean tissue
feed conversion (LTFC), and voluntary feed intake (VFI) on ad libitum intake of Edinburgh-Wye
lines 1,2.
Trait LTGR LTFC VFI
Daily live weight gain, g +76 +10 +73
Daily feed consumption, g +25 +131 +272
Feed conversion ratio -0.24 -0.18 +0.13
Average backfat, mm -3.0 -3.1 +1.8
Lean tissue growth rate, gld +47 +30 +3
Lean tissue feed conversion, glkg +44 +36 -18
lFrom Cameron and Curran (4).
2Values are differences between high and low divergent lines.
TABLE 5. Estimated feeding pattern parameters from Hunday FIRE feeders in a Cotswold United
Kingdom sire line.l
Genetic correlation with
Average Feed Growth
Trait Mean Heritability backfat conversion rate
Daily feed intake, kg 2.06 0.21 0.78 0.65 0.61
Feed intake per visit, kg 0.20 0.27 0.35 -0.12 0.49
Visits, /d 10.1 0.34 -0.15 0.31 -0.29
Time per visit, min 6.0 0.11 0.17 -0.27 0.33
Feed rate, kg/min 0.14 0.00 -0.08 0.25 -0.39
recorded, the system provides detailed measurements and 120 kg of live weight. The resulting LTGR pat-
of feeding pattern and behavior. In cosponsored terns brought two surprises. First, muscle growth
research (18) at the Scottish Agricultural College rates of over 400 g/d were reached before 40 kg,
(Edinburgh, United Kingdom), there was no indica- suggesting that selection to increase early intake may
tion that feed intakes differed from normal commer- indeed be worthwhile. Second, the relationship be-
cial levels, or, more important, that selection in the tween muscle weight and live weight was almost
stations would increase aggressive feeding behavior. linear, making prediction of LTGR very easy (F. A.
However, feeding patterns varied widely in the num- Smith, 1996, personal communication).
ber of meals per day and rate of eating; at higher Population structures, such as the use of the group
stocking rates, pigs readily adapted by eating fewer nucleus to improve litter size, make use of very cheap
larger and faster meals with little impact on LTGR. measurements (litter size, growth rate, and backfat)
Recent genetic analysis has shown that many of in a large population. Electronic measures of in-
the feeding pattern traits are quite highly inherited dividual feed intake are much more expensive and
(Table 5) and, through their correlations with LTGR, could not be applied economically to all progeny from
might actually be used to speed genetic improvement. 1000 sows. The solution adopted for Cotswold sire
In the Cotswold nucleus, feed intake records from 45 lines is an open nucleus (Figure 3) in which expen-
to 95 kg increased improvement by around 18%. Fur-
ther addition of feeding pattern traits raised this
value to 24% (A. D. Hall, 1997, personal communica-
tion).
Taking a simple view, the pig is overfat because its
feed intake is not in balance with its genetic potential
for LTGR. Fat is then a consequence of a genetic intake
mismatch between the two traits. The ideal pig of the bii limiting
'-.-;
future would eat to realize its potential LTGR and a
predetermined level of fat. In practice, the modern pig .EbO
may eat too little to realize the full potential LTGR
.....
G.)
"
Two-dimensional (real-time) scanners are now in
existing intake curve routine use for the Cotswold population of sire lines.
Software is now available to provide an automatic
computer analysis of the ultrasonic image of either a
transverse or longitudinal section of the longissimus
Weaning
Age
+
Slaughter
dorsi (16). This equipment could eventually provide
ratios of muscle to fat in the bacon rashers as well as
intramuscular fat content, although recent prelimi-
nary trials in Canada gave poor success (20). More
Figure 2. Representation of selection to increase early feed expensive techniques, such as X-ray computed tomog-
intake. raphy scanning, offer more detailed measurement of
muscle properties, such as water-holding capacity,
but require anesthesia and are prohibitively expen-
sive measurements of intake and real time ultrason- sive for all but research applications. The TOBEC
ics are confined to a single core nucleus farm of 300 (total body electrical conductivity) methods being de-
sows. veloped in the US measure total lean content ( 1 ), but
Genes pass from the core nucleus via AI to an with little extra accuracy and at far greater cost than
array of four multipliers producing purebred terminal ultrasonics.
sires for sale. Boars on the multiplier units undergo a
less expensive performance test for pigs that are fed
in groups for ad libitum intake; this test measures
Nucleus
only growth rate and backfat. With AI sires in com-
mon, the genetic merit of boars at nucleus and mul-
tiplier levels can then be directly compared using
BLUP. When by chance boars of exceptionally high EJ Hunday
FIRE feeders
individual feed
merit occur at multiplication, their genes can be
returned to the nucleus via AI. Although, with LTGR tt intake
••
CARCASS VALUE
The financial value of the carcass to the processor
depends on the quantity, quality, and distribution of
lean in the carcass and may very probably differ from Total 1200 ~ purebred multipliers
the fat or lean measurements on which payment is
based. Existing mechanical and optic probes used for Figure 3. Cotswold open nucleus structure for genetic improve-
ment of lean growth in sire lines (arrows indicate flow of genes).
carcass assessment estimate only lean percentages, Hunday FIRE feeders were obtained from Hunday Electronics Ltd.
and the accuracy of the prediction equations em- (Newcastle-upon-Tyne, United Kingdom),
For the improvement of meat quality, most of the tween or within the halothane gene for separate ele-
genetic effort has been directed at the halothane gene. ments influencing meat quantity and quality. If so,
Since 1991, the HAL-1843 DNA test, available on multiple copies of the favorable element might be
license from the Toronto Innovations Foundation created for insertion by new molecular genetic tech-
(Toronto, ON, Canada), has offered a means of niques. Should the halothane gene be eliminated and
eliminating this gene. The effects of this gene in then required again, the one or more mutations could
increasing lean yield along with risk of stress deaths presumably be quickly recreated and reintroduced by
and porcine stress syndrome have been very well molecular methods.
documented. The debate centers on the case for con- Once the halothane gene has been removed, there
tinuing to produce heterozygous (Nn) terminal boars are a number of critical questions for the future:
for mating to homozygous negative females (NN) to
produce a slaughter generation containing 50%Nn 1. How far will quality deteriorate as a conse-
and 50%NN. Within litters, Nn pigs clearly have a 1 quence of continued selection for lean growth?
to 3% advantage in lean yield. However, evidence 2. What is the scope for further improvement of
continues to accumulate that the gene (n) is also quality?
additive rather than recessive for meat quality and 3. How much of the selection effort within lines
that Nn is inferior to NN (13). should be diverted to quality traits?
There are four primary reasons for favoring com-
plete elimination of the halothane gene in the short In a recent study of halothane-negative NN Dutch
term: Yorkshires, there were no unfavorable genetic corre-
1. New controlled atmosphere packaging systems lations of lean growth with water-holding capacity or
to prolong the shelf-life of fresh pork require that the meat color (5). However, each 1% genetic increase in
meat retain its natural content of water to the fullest lean content was predicted to reduce intramuscular
extent. fat by around 0.07%. A threshold at which low in-
2. As lean percentage and LTGR increase by selec- tramuscular fat becomes a limiting factor on quality
tion, the adverse effects of the gene on quality and could therefore be reached within 5 to 10 yr. If so, in
stress susceptibility are very likely to increase also. vivo prediction of intramuscular fat becomes a pri-
3. In addition to the high cost of maintaining ority. Dutch reports (26) of a marker gene accounting
stress-susceptible (nn) nucleus populations, there are for half the genetic variation in intramuscular fat are
also welfare concerns. still under investigation.
4. Continued presence of the halothane gene may Duroc crosses certainly improve tenderness, but at
obscure important, longer term relationships between the expense of lean yield and feed conversion. Less
meat quantity and quality. clear is the extent to which this improvement is due
Mter approximately 15,000 DNA tests, Cotswold is to higher intramuscular fat content. Trials (27) con-
in the final stages of elimination of the halothane ducted by the Meat and Livestock Commission in the
gene from all lines. In one very lean composite line, United Kingdom suggest that at least 50% Duroc
the frequency of the gene has been reduced from 90% genes may be needed for a worthwhile improvement,
to 0 over 10 yr, first by halothane testing, then by requiring a very high premium to compensate for the
blood typing for neighboring marker genes (PHI, loss of lean growth. Meishan crosses appear to show
P02, and 6-PGD) , and finally by DNA testing. Dur- less advantage in meat quality than do their Duroc
ing this time, the lean content that was lost with the counterparts, even though the Meishans probably
halothane gene has been almost completely restored have more intramuscular fat. The RN- gene that was
to within 0.5% lean by selection on the many other discovered in France reduces curing yield but can
genes with smaller effects on yield. Meat color, improve eating quality (15); this gene appears to be
however, has been improved in the pure line by 40%. largely confined to the Hampshire breed.
The line is currently used to produce a crossbred Until quality can be more easily measured in the
terminal sire bearing the HAL-1843nm trademark, live pig, the selection effort is probably best concen-
guaranteeing freedom from the gene. trated on lean growth. Possible approaches to in vivo
Theoretically at least, there conceivably could be measurement might involve ultrasonic, X-ray, or
ways in which the advantages of the gene might be other scanning technologies, but the most promising
exploited without incurring the disadvantages for approach may be the use of marker genes. Mean-
quality. One possibility might be the occurrence of while, research is urgently needed on basic biology
recombinants either between closely linked genes be- and quality measurements. Recent studies suggest
1aaa-sow group nucleus 1aaa-sow group nucleus allowing BLUP selection for litter size to be applied to
100% of the genes in the parent gilt.
The composite line approach has been adopted by
Large White lOO-sow nucleus Landrace
Cotswold breeders in three steps over 8 yr. First, the
type red coat color of the Duroc was removed by backcross-
ing the dominant white coat color inhibitor gene (I)
from a European white line. The resulting White
Duroc line was 97% Duroc and homozygous white.
Second, crosses were made to introduce the desired
proportion of White Duroc into the existing European
dam lines. Finally, foundation animals of the new
25% Duroc Parent Gilt
Litter size selection applied to 75% genes
composite lines were strongly selected for LTGR, lit-
ter size, and uniformity, followed by DNA testing to
Figure 4. Conventional cross to incorporate Duroc in the parent remove the halothane gene completely.
gilt. The composite line approach, in addition to remov-
ing the need for purebred Duroc, has the advantage of
increasing heterosis and, therefore, litter productivity
in the nucleus. This increased productivity in turn
that a fast LTGR may improve quality through in- increases selection differentials, leading to faster im-
creased post-mortem activity of proteolytic enzymes. provement at lower cost, thus, restoring genetic varia-
Another approach might be to select for a more tion and reducing inbreeding in breeds that have
favorable distribution of fiber types in the muscle by undergone 30 yr or so of scientific selection and that
using marker genes. may be at risk from increasingly high levels of
homozygosity.
RELIABILITY Perhaps the greatest future threat to sow produc-
tivity and pig production will come from disease. Al-
Reliability is a difficult but important concept to
ready the greater concentrations of pig herds and
define, but the main components appear to be ease of
open borders appear to be leading to multifactorial
integration into the herd, general disease resistance,
complexes of reproductive, respiratory, and locomotor
behavior in individual or group housing, feet and leg
diseases. It is very difficult to gauge the potential
condition, and a long productive life.
effectiveness of new DNA-based vaccines and meas-
In the United Kingdom, where 20% of sows are
ures such as split-site production in controlling dis-
now housed outdoors, the solution has been to add a
proportion of Duroc breed for robustness, increased
disease resistance, very high levels of heterosis,
and-in crosses with European lines-surprisingly lOOO-sow group nucleus lOOO-sow group nucleus
placid behavior and good maternal performance. Typi-
cally, the parent gilt would be a static cross of Large Composite line Composite line
White and Landrace types containing 25% Duroc containing containing
(Figure 4).
The problem is that a pure Duroc line is expensive
LW + Duroc LR + Duroc
to maintain, making it difficult to justify nucleus
populations that are large enough to allow worth-
while long-term improvement oflitter size. The BLUP
selection for litter size is, therefore, only applied to
75% of the genes of the parent gilt. There is also a
1-yr genetic lag in producing the three-way cross, and
this lag would be increased if any proportion other
than 25% Duroc were required. The solution is to 25% Duroc Parent Gilts
incorporate a proportion of Duroc genes in one or both Litter size selection applied to 100% genes
of the former Large White and Landrace lines
Figure 5. Principle of composite lines to incorporate Duroc in the
(Figure 5). The two resulting composite lines can be parent gilt while maximizing genetic progress. LW = Large White;
selected as group nucleus populations of 1000 sows, LR = Landrace.
ease. At present, selection for resistance to anyone ternative markers in the same region of the
disease would appear to be fruitless because of the chromosome that are publicly available.
faster mutation rate of the disease organism itself. Exploitation of ESR might be to make existing
The challenge is to raise general immune responsive- Meishan composite or Large White lines homozygous
ness by genetic means. or to backcross the gene from Meishan into European
At least some hope of success is offered by the dam lines by the process of marker-assisted introgres-
study at Guelph, which has completed more than six sion. Depending on the initial frequency of the gene,
generations of selection for high and low immune the former might give a single improvement of 0.6 pig
responsiveness in Canadian Yorkshires (1 7). Pigs per litter in the parent gilt and the latter up to 1.0 pig
were selected on a BLUP index of reaction to a per litter. Both would pay a price of loss of selection
challenge by four foreign proteins. After four genera- on other traits. It is curious that a gene with such a
tions, the lines that were selected for the high and large, apparently beneficial effect should not have
low response differed by over one standard deviation increased in frequency to 100% in populations in
on BLUP index, and the heritabilities of the four which it occurs. Like the halothane gene, this gene
component traits ranged from 13 to 32%. When might well have some yet unknown harmful effects.
challenged with Mycoplasma hyorhinis, the high line The search for marker genes in commercial popula-
had greater antibody titers and fewer and less severe tions has now begun. For the present, it seems likely
clinical symptoms. This result suggests that there that the performance advantage from making anyone
may be a way of measuring general immune respon- marker homozygous, in relation to the cost of DNA
siveness that might then be used to search for marker testing and loss of selection on other traits, may be
genes as a cheaper option in practice. small. However, the cost of DNA testing is likely to
decrease, and, in Edinburgh, the Roslin Institute has
MOLECULAR GENETICS
established its own commercial marker genotyping
company, Rosgen Ltd. Even so, the effect on perfor-
The Pig Genome Mapping Project (PiGMap), mance may need to be very large to be worthwhile
funded by the European Union, together with North because BLUP is already very powerful and cost effec-
American and Scandinavian gene maps (2), have tive. Caution is also required because the effect of a
already identified more than 1500 genes scattered single gene on performance may have been overesti-
over the 38 chromosomes of the pig. The primary mated in the past by least squares (10).
objective is to understand at a fundamental level how Gene transfer is in its infancy, although recent
genes work together to control development and func- success in cloning should substantially reduce the
tion, and the maps are freely accessible via the Inter- cost. Transgenic pigs containing extra growth genes
net. However, the maps also offer the opportunity of have experienced well-publicized side effects on
marker genes for quantitative trait loci that might be reproduction and locomotion. The transfer of sry and
used for marker-assisted selection. related genes controlling maleness on the Y chromo-
As the first step, the search is now on for associa- some might conceivably offer a means of producing a
tions between markers and performance of ex- single gender to increase efficiency and uniformity.
perimental Chinese x European backcrosses and wild Some form of genetic manipulation might help to
x domestic backcrosses that will produce the widest reduce protein turnover in order to reduce nitrogen
possible genetic variation. Approximately 80 associa- excretion. For feed efficiency, genetic manipulation
tions have already been reported, including backfat, might be better targeted to fodder crops than to
growth rate, litter size, intramuscular fat, coat color, animals. A major goal has to be a better biological
and disease resistance. Much attention has been fo- understanding of the animal and its behavior. For
cused on the estrogen receptor gene, ESR, which ap- example, the recently discovered ob mutation in mice
pears to act as a marker for a major gene on chromo- causes obesity through a deficiency of the satiety
some 1 affecting litter size (19). In first parity, 50% factor leptin. This finding could be a first step in
Meishan crosses, the difference between ESR understanding the control of feed intake at the
homozygotes is around 2 to 3 pigs per litter, declining molecular level, offering the prospect of correcting the
to 1.0 at later parities. Also, ESR appears to be major deficiency, overconsumption of feed. In the
present in the Large White with an effect of 0.8 to 1.0 longer term, progress in medical research on cancer
pigs per litter. The ESR has been patented and exclu- and AIDS (acquired immune deficiency syndrome) is
sively licensed to one breeding company, but, for- leading to an understanding of the molecular genetics
tunately for others, there are several potentially al- of the immune system, and there conceivably could be
19 Rothschild, M., C. Jacobson, D. A. Vaske, C. Tuggle, L. Wang, 24 Wilson, M. L., S. P. Ford, and A. J. Conley. 1996. Differences in
T. Short, G. Eckardt, S. Sasaki, A. Vincent, D. G. McLaren, preimplantation development of Meishan and Yorkshire em-
O. Southwood, H. van der Steen, A. Mileham, and G. Plastow. bryos: a strategy for increased embryo survival. Swine Res.
1996. The estrogen receptor locus is associated with a major Rep. 46-51, Iowa State Univ., Ames.
gene influencing litter size in pigs. Proc. Natl. Acad. Sci. USA 25 Young, L. D. 1995. Reproduction of F 1 Meishan, Fengjing,
93:201-205. Minzhu, and Duroc gilts and sows. J. Anim. Sci. 73:711-712.
20 Sather, A. P., D.R.C. Bailey, and S.D.M. Jones. 1996. Real-time
ultrasound image analysis for the estimation of carcass yield
and pork quality. Can. J. Anim. Sci. 76:55-61. REFERENCES ADDED IN PROOF
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estrus in swine. M. S. Thesis, Dep. Anim. Breeding, Wagenin- 26 Janss, L.L.G., J.A.M. van Arendonk, and E. W. Brascamp. 1994.
gen Agric. Univ., Wageningen, The Netherlands. Identification of a single gene affecting intramuscular fat in
22 Wade, K. M., and R. Lacroix. 1994. The role of artificial neural Meishan crossbreeds using Gibbs sampling. Proc. 5th World
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Inform. 17(l):l1N-16N. ment Unit Second Trial Results.