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[Bulletin of the Veterinary Institute in Pulawy] Evaluation of diagnostic methods to distinguish between calves persistently and transiently infected with bovine viral diarrhoea virus in respect to the presence
[Bulletin of the Veterinary Institute in Pulawy] Evaluation of diagnostic methods to distinguish between calves persistently and transiently infected with bovine viral diarrhoea virus in respect to the presence
DOI: 10.2478/bvip-2013-0054
Abstract
Two issues concerning virus detection and identification of persistently infected (PI) cattle were analysed in the study: 1)
interference by maternal antibodies and 2) discrimination between PI and transiently infected (TI) animals. Antigen ELISA and
RT-PCR based methods were compared using serum samples from natural and experimental PI and TI calves. RT-PCR and real-
time RT-PCR using primers within 5’UTR region were more sensitive in detecting PI animals than Erns and NS3 antigen capture
ELISAs, and they were not influenced by the presence of colostral antibodies in serum or by bovine viral diarrhoea virus
genotype. The serum samples with Ct values ≤ 29.10 (corresponding to 10 4.87 viral RNA copies/µL) identified PI animals with
100% probability, while all samples with Ct values > 32.06 (corresponding to viral RNA load below 104 copies/µL) indicated TI
status. The samples with Ct values between 29.10 and 32.06 (17.2% of PI and 11.5% of TI) should be considered as PI suspect
and retested.
Key words: cattle, bovine viral diarrhoea virus, persistent infection, transient infection, ELISA, RT-PCR.
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(28). Some of the eradication schemes are mainly based monitoring and were confirmed negative 3 weeks later
on the identification of PIs by individual serological on the second testing by real-time RT-PCR test
testing followed by virus detection in seronegative confirming the TI status. The remaining 43 real-time
animals because PIs are usually devoid of antibodies RT-PCR positive serum samples came from 3 to 5
(26). However, this assumption is not always true, and months old calves experimentally infected with BVDV-
the presence of antibody positive PIs may lead to the 1a as described previously (17). Samples were
failure in BVDV eradication scheme. Another problem collected between 2nd and 28th d post-infection. Serum
is the differentiation between PI and transiently samples from 50 animals free of BVDV infection and
infected (TI) animals when virological test result is antibodies were used for the specificity evaluation.
positive (10). RNA extraction and conventional RT-PCR.
Total RNA was extracted from 500 μL serum samples
using TRI Reagent (Sigma-Aldrich, USA), according to
the manufacturer’s instructions. The RNA was eluted in
20 μL of DEPC water and stored at –70 C until testing.
RT-PCR was carried out using a commercial kit (Titan
One Tube RT–PCR System, Roche Biochemicals,
Germany) following the manufacturer’s protocol and
panpestivirus primers 324F/326R flanking the 5’
untranslated region (5’UTR) were used (27). The final
volume of RT-PCR mixture was 25 μL comprising: 14
μL of RNase-free water; 5 μL of reaction buffer; 0.5 μL
of dNTP mixture (10 mM); 1 μL of each primer (10
μM); 1.25 μL of DTT solution (100 mM); 0.5 μL of
enzyme mix, and 2 μL of RNA template. Amplification
was performed in 40 cycles of denaturation at 94 C for
15 s, annealing at 53 C for 30 s, and extension at 68 C
for 30 s. The reaction products were evaluated in
ethidium bromide-stained 1.5% agarose gel and the size
of the amplicons was compared with the molecular
weight standard.
Real-time RT-PCR. In-house real-time RT-PCR
was performed using AgPath-ID kit reagents (Life
Technologies, USA) according to the manufacturer’s
protocol in the StepOnePlus real-time PCR system
Fig. 1. Persistent (A) and transient (acute) (B) BVDV infections (Life Technologies, Republic of Singapore) with
presented schematically
primers and probes designed by Baxi et al. (3). The
primers: Pesti-F (5’-CTAGCCATGCCCTTAGTAG-3’)
The purpose of the study was to compare and to
and Pesti-R (5’-CGTCGAACCAGTGACGACT-3’) allow
evaluate the reliability of commonly used diagnostic
the detection of both genotypes of BVDV, namely
methods to detect BVDV PI cattle in the presence of
BVDV-1 and BVDV-2, while the probes BVDV-1:
maternal antibodies. The reliability of selected
5’TAGCAACAGTGGTGAGTTCGTTGGATGGCT-3’
diagnostic methods was evaluated in order to reduce
and BVDV-2: 5’-TAGCGGTAGCAGTGAGTTCGT
the risk of spreading the virus in the herd through the
TGGATGGCC-3’ are genotype-specific. The probes
effective detection of PI animals at an early age, thus
were produced and labelled with fluorescent reporter
avoiding the diagnostic gap due to the presence of
FAM and VIC at the 5’ ends and a quencher BHQ-1 at
maternal antibodies.
the 3’ ends (Metabion International, Germany). Ten-
fold serial dilutions of in vitro transcribed 5’UTR RNA
Material and Methods from Polish BVDV-1d isolate, cloned in the plasmid
were included as the quantity standards as described
Persistently and transiently infected calves. previously (16, 17).
Serum samples were collected from 29 calves 6 month Antigen ELISA. The presence of BVDV antigen
aged from 12 different herds in Poland. Persistent was tested with two enzyme-linked immunosorbent
infection of these animals with BVDV was confirmed assay (ELISA) kits. Erns–based Ag ELISA (HerdChek
by two consecutive positive results using conventional Ag/Serum Plus test kit, IDEXX, Switzerland) was used
RT-PCR assay performed on serum samples collected for the detection of BVDV specific antigen. All
2–3 weeks apart. Samples from the first collection were samples with optical density (O.D.) values equal to, or
used. Additionally, serum samples from 52 animals above 0.3 were considered positive according to the
transiently infected with BVDV were used. Nine of manufacturer’s guidelines. The second antigen ELISA
these samples were collected during the herd was NS3-based Ag ELISA (SERELISA BVD p80 Ag
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Mono Indirect, SYNBIOTIC, France) used for the < 0.05 was considered as the level of statistical
detection of BVDV p80 (non-structural NS3 protein). significance. Receiver operating characteristic (ROC)
The test was performed with ten-fold diluted serum analysis was used to calculate the optimal cut-off for
samples. The samples with O.D. values above cut–off the real-time RT-PCR and for antigen ELISA that
values corresponding to ≥ 70%, and ≤ 40% competition would be able to distinguish between PI and TI
of the positive control O.D. value were considered animals. The PI/TI status provided reference variable,
positive and negative, respectively. while Ct value, copy number, and Erns Ag ELISA O.D.
Antibody ELISA. A commercial indirect ELISA value were considered as classification variables.
was used for the detection of BVDV specific Erns – Persistent infection variable (PI = 1, TI = 0) was
antibodies (HerdCheck BVDV Ab, IDEXX, considered the reference variable, while Ct value, log
Switzerland). The 10-fold prediluted serum samples viral RNA copy number, and Ag ELISA O.D. value
were tested and those with corrected O.D. values ≥ 0.3 were the classification variables. The areas under curve
were classified as positive. In a blocking ELISA (AUC), which indicated the probability of correct
referred to as NS3 Ab ELISA (SERELISA BVD p80 random ranking of positive sample by the classifier
Ab Mono Blocking, SYNBIOTICS, France), the were presented below the graph. ROC curves were
samples with O.D. values corresponding to ≥50%,and created by plotting the fraction of true positives out of
<30% competition of the positive control O.D. value all positives (sensitivity) versus the fraction of false
were considered positive and negative, respectively. All positives out of the true negatives (specificity), at
ELISA tests were performed according to the protocols various threshold settings. Statistical analyses were
provided by the manufacturers and the O.D. values performed using STATA v.11 (Stata Corp., USA).
were read at 450 nm wavelength.
Virus neutralisation test (VNT). Two-fold serial
Results
dilutions (from 1:5 up to 1:320) of serum samples heat-
inactivated at 57 C for 30 min were loaded in duplicate Distinction between PI and TI calves. The Ct
rows of 96-well microtitre plates. One hundred to 300 values and corresponding viral loads expressed as the
TCID50 of cytopathic BVDV-1a Singer strain and 50 copy number per microlitre (calculated using BVDV-
μL of media was added to each well and the plates were 1d standard) established for PI and TI groups differed
incubated for 1 h at 37 C. One hundred microlitres of significantly (P < 0.00001) (Table 1). The means and
bovine turbinate (BT) cells suspension (3 × 105/mL) confidence intervals presented in Table 1 refer to the
were added and the plates were incubated for 4–5 d at values obtained for the samples positive in the
37 C in an atmosphere of 5% CO2. The cells were corresponding test. The percentage of positive and O.D.
observed for cytopathic effect (CPE) and the antibody values in Erns Ag ELISA was also significantly
titres were determined as the reciprocal of the highest different (P = 0.001) between the two groups. The E rns
serum dilution, which neutralised the virus in at least Ag ELISA detected 26 out of 29 PI animals, while only
50% of wells (1 well). one PI animal was detected by NS3 Ag ELISA.
Virus genotyping. The 5’UTR amplicons were Transient BVDV infection was also detected in over a
purified and sequenced in both directions using the half of calves using Erns Ag ELISA. However, the O.D.
same primers as for the conventional RT-PCR using values of this ELISA were significantly related (P =
Big Dye Terminator v3.1 Cycle Sequencing kit (Life 0.004) to the type of infection (persistent vs. transient).
Technologies, Canada) on a 3730XL Genetic Analyzer NS3 Ab ELISA failed to identify 87.5% (14/16)
(Applied Biosystems, USA). The alignments were and 25% (3/12) of antibodies found by Erns Ab ELISA
performed using ClustalW from MEGA software in PI and TI animals, respectively. No correlation
version 5.05 (the Biodesign Institute, USA) with between seropositivity and the age of PI animals was
reference sequences of BVDV-1 subgenotypes found (P = 0.11), although seropositive PIs constituted
retrieved from GenBank as described elsewhere (15). 100% of calves under the age of one month and 57% of
Statistical analysis. The distribution of calves below the age of 6 months. Neutralising
continuous variables was assessed by the normality and antibodies were detected only in one PI animal with the
probability plots as well as the Shapiro-Wilk test. titre of 40. On the other hand, VNT showed higher
Continuous variables were presented as mean or sensitivity in detecting antibodies in TI animals when
median with the 95% interquartile range and compared with Erns and NS3 Ab ELISA results (16
dichotomous variables as percentages. Comparison positive samples versus 12 and 9, respectively).
between the groups was performed by unpaired t or Therefore, the differences observed for two groups in
Mann-Whitney tests. Continuous variables among the VNT results were statistically significant (P = 0.004).
two groups (PI and TI) in correlation to the presence or Influence of the presence of ELISA detectable
the absence of detectable antibodies were compared by antibodies on the Ct values and virus load in the real-
Anova or Kruskal-Wallis test, when appropriate. time RT-PCR, with respect to the type of infection is
Categorical variables were compared using the chi presented in Figs 2A and 2B. Data is presented as box
square test. Correlations were analysed by Pearson or plots with medians and interquartile range.
Spearman test, when appropriate. A two-tailed P-value
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Table 1. Positive results for serum samples collected from BVDV PI and TI cattle using different diagnostic methods
Method PI TI
RT-PCRa 29/29 (100%) ndb
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Similarly, O.D. values in Erns Ag ELISA (ρS=-0.34; P = specificity with respect to PI detection. Independently
0.53) and in Erns Ab ELISA (ρS = 0.44; P = 0.1) were to the ROC optimised cut off value and the presence of
independent from virus genotype. antibodies, the sensitivity of PI detection did not reach
100%.
Discussion
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