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CLF Microbiology Method Collection Web Version
CLF Microbiology Method Collection Web Version
Introduction 1
Dear colleagues,
CLF Microbiology methods have already been in use for more than a decade now in several baby food
factories and have been used as the defined reference in discussions with raw material suppliers and
co-manufacturers.
The CLF Microbiology Method Collection is directly related to the Danone Nutricia Early Life Nutrition
Global Safe Food Standards. It provides explanations and background information to the method
references listed on page 24 of the 2014 version of the Danone document.
The CLF Microbiology Method Collection has been constantly updated according to changes in the
regulatory and scientific area. Most of the methods are based on relevant ISO norm standards.
However the ISO standards often leave options in the analyses regarding essential parts of the
analytical method like incubation temperature or the agars to be used. Moreover most of the ISO
methods are horizontal methods which indicate that they are applicable to all kinds of food in a full
range from human food to animal feed. This range has been indicated in the updated versions of the
CLF methods by extending the analytical scope to pet food. This is simply the reflection of the ISO
method and of no relevance for the analytical scope within Danone. In these cases the CLF
Microbiology Method Collection provides the necessary explanation and clarification. The option which
has been chosen in the CLF version is the one which has been found most suitable for infant formula
and related raw materials. In cases where no suitable ISO norm is available, the CLF Microbiology
Method Collection provides methods based on other international standards or scientific references.
At the end of each method, you will find “amendment and comments compared to ISO norm” in which
the most current updates are included, specific notes are highlighted, the comparison between CLF
method and ISO norm is made and the differences are illustrated in a flow diagram.
Validation and re-validation trials have been performed for each method in a broad spectrum of
bacteria as well as a wide range of products to ensure the reliability and robustness of the test
methods for infant nutrition products and related raw materials.
This booklet is the 2014 version of the CLF Microbiology Method Collection with the scope focused on
methods used for the quality control of baby food products and their raw materials. The document will
be updated on annual basis to keep the included methods up to date with changes in official methods
and with the scientific development in the field of analytical microbiology.
We are very interested in your feedback on the methods, because only with the experiences shared
with us from the operating laboratories is it possible to provide a method collection which is tailor made
to the requirements of infant nutrition release tests.
June 2014
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SAMPLE PREPARATION – RESUSCITATION AND DILUTION
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Modifications
This method is based on EN ISO 6887-1, 1999.
The following modifications have been performed:
Utilization of additional media (TSB and Ringer’s solution); resuscitation time for 2 h
NOTES:
Liquid samples do not need to be resuscitated.
Other media which can also be used for resuscitation are peptone salt solution (PSS) and Ringer’s solution
(RS).
During resuscitation, also growth of non damaged cells can occur. The resuscitation time is therefore always a
compromise between the resuscitation time necessary for sublethally damaged cells and the time in which
cells will start to grow.
In the past, BPS (buffered peptone salt solution) was used as well. Now PSS has replaced BPS. However, in
some methods the use of BPS is still mentioned.
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Enzyme solutions
Filter and sterilize the enzyme solutions using a 0.2 m hollow fibre filter or use
commercially available sterile vials and dissolve in sterile water.
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5 Equipment
Usual microbiological equipment
6 Procedure
A general procedure for resuscitation is described in 6.1 and for thickeners in 6.2.
NOTE:
It is allowed to warm the resuscitation medium shortly to 40°C (maximum 15 min, 40°C) to obtain a
homogenous suspension (for example for chocolate). After warming the sample has to be cooled to room
temperature quickly.
Masses shall be weighted with an uncertainty of max. 5%, volumes with an uncertainty of max. 5%.
Because no resuscitation is performed for the spore analyses, the sample can also be weight into a stomacher
bag, after which the necessary amount of medium is added to the sample.
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cellulase 1-5% w/v, 1 ml to 100 ml suspension cellulose (e.g. for guar gum)
pectinase 1-5% w/v, 1 ml to 100 ml suspension pectin (e.g. for locus bean gum)
NOTES:
The weighed amount of sample may be maximum 5% above or below the set amount.
The growth of bacteria may be inhibited when the sample is thick, even when clumps are present. In those
cases even further dilution and/or a higher concentrated enzyme solution is necessary.
After resuscitation and/or before pasteurization the sample has to be clump free and liquid. This is achieved
by the combination of enzymes, the suspension concentration (10%, 1%, etc) and the time during which the
enzymes can break down the substrate. The more concentrated the sample, and the lower the enzyme
concentration, the longer it will take to liquefy the sample. Additionally enzymes are inactivated through
pasteurization and can therefore be less efficient or do not work at all in spore analyses.
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NOTE:
For reference capsules and dry samples, the sample suspension (10% suspension) itself is regarded as the
first decimal dilution.
8 Validation
See validation report M01_01VB.
9 References
The above mentioned method is based on the following references, but does not
necessarily reflect the exact methodologies.
1. Dijk, R, Grootenhuis A “Microbiologie van voedingsmiddelen - methoden, principes en
criteria” Keesing Noordervliet, Houten, 1999, p.33-34.
2. Everis L. “Significance of injured microorganisms in food” 1999, Review No 19,
Project No 42224, Campden and Chorleywood Food Research Association, UK.
3. Foegeding P.M., Bibek R. Chapter 7, “Repair and detection of injured micro
organisms” in: “Compendium of methods for the microbiological examination of foods”
C. Vanderzandt, D.F. Splittstoesser (eds), 1992, American Public Health Association,
Washington, p.239-249.
4. Mossel, D.A.A., Corry J.E.L., Struijk C.B., Baird, R.M. Chapter 9 “Recommended
monitoring procedures” in “Essentials of the microbiology of foods – A textbook for
advanced studies” John Wiley & Sons, Chichester etc, 1995.
5. International Organisation for Standardisation, “EN ISO 6877-1, Microbiology of food
and animal feeding stuffs – Preparation of test samples, initial suspension and
decimal dilutions for microbiological examination”. 1999.
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10 Attachments
NaCl 8.5 g
Water 1000 ml
RS NaCl 2.25 g
KCl 0.105 g
Na2CO3 0.05
Water 1000 ml
NaCl 5.0 g
KH2PO4 1.5 g
Water 1000 ml
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Acid products
3. Add sterile NaOH (5% w/v) to the sample until the pH value reaches 7. Note how
much NaOH has been added.
4. Add to a new resuscitation broth the noted amount of sterile NaOH (5% w/v).
NOTE:
For the analysis of acidophilic bacteria in acid products (like yoghurt or fruit-concentrate on Lactobacilli, see
M01_18ME or M01_02ME) a neutralisation of the resuscitation broth is not necessary.
Trace elements
NOTE:
High trace-element-concentration is toxic for microorganisms. This effect works directly, a later suspension
from 10% to 5% or 1% is not satisfactory because the cells are already marred.
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AMENDMENTS AND COMMENTS COMPARED TO ISO NORM
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TOTAL VIABLE COUNT 30°C and 55°C
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5 Equipment
Usual microbiological equipment
6 Procedure
6.1 Enumeration
1. Sample reconstitution
1.1 Prepare a resuscitated sample, a suitable dilution series dependent on the presumed
contamination level of the sample (see method M01_01ME). The number of colonies
on a plate should not exceed 300 colonies.
1.2 Preparation of butter sample:
Weigh 10 g butter into a container and place the container in a water-bath at 45°C.
Keep it in the water-bath until butter has just melted.
90 ml BPW is pre-warmed at 45°C and supplemented with 5 ml Tween 80. Add the
pre-warmed diluent to the butter test portion. Shake well until a stable emulsion is
obtained.
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2. Sample pipetting
2.1 Pipet 1 ml of the appropriate dilution into a Petri dish.
2.2 Pipetting of butter sample:
Butter emulsion is distributed evenly on the surface of dried, finished PCA agar
plates.
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NOTE:
To avoid drying out of the plates they should be packed in a well-closed plastic bag or box. Add some tissue
paper to the plastic bag to absorb condensate water which helps to prevent spreading of the colonies.
5. Count all colonies. Spreading colonies are counted as single colonies. If less than
one quarter is overgrown by spreading colonies, count the colonies on the unaffected
part of the plate and calculate the corresponding number for the entire plate. If more
than one-quarter of the surface is overgrown by spreading colonies, re-analyze the
sample by using a surface layer.
NOTE:
When spreading colonies are expected, a thin surface layer of about 4 ml of the same agar can be poured to
prevent spreading after complete solidification. Allow to set.
6.2 Confirmation
Not necessary
8 Validation
See validation reports M01_02VB and M01_02VB2_v02.
9 References
The above mentioned method is based on the following references, but does not
necessarily reflect the exact methodologies.
1. Hatcher W.S. Jr., Weihe, J.L., Splittstoesser D.F., Hill, E.C. and Parish M.E. “Fruit
beverages” In: “Compendium of methods for the microbiological examination of
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foods”. 3rd ed., Vanderzant, C. and Splittstoesser, D.F. (Ed), American Public Health
Association, Washington, 1992, page 953-960.
2. International Organization for Standardization, 1990. ISO 7698, Cereals, pulses and
derived products – Enumeration of bacteria, yeasts and moulds.
3. International Organization for Standardization, 2013. ISO 4833, Microbiology of food
and animal feeding stuff – Horizontal method for the enumeration of microorganisms
– Colony-count technique at 30°C.
4. International Organization for Standardization, 1992. ISO 6610, Milk and milk
products – Enumeration of colony forming units of microorganisms - colony count
technique at 30C (IDF Standard 100B).
5. International Organization for Standardization, 1989. ISO 8261, Milk and milk
products – Preparation of samples and dilutions for microbiological examination.
6. International Organization for Standardization, 2010. DIN EN ISO 6887-5,
Microbiology of food and animal feeding stuffs – Preparation of test samples, initial
suspension and decimal dilutions for microbiological examination – Part 5: Specific
rules for the preparation of milk and milk products.
7. International Organization for Standardization, 2002. ISO 13559, Butter, fermented
milks and fresh cheese – Enumeration of contaminating microorganisms – Colony-
count technique at 30°C.
8. Nederlands normalisatie instituut. 1998. Milk and milkproducts. Enumeration of
thermoduric micro organismen. 2nd draft, February 1998, NNI 98-05.
9. M01_01ME “Sample preparation and dilution”. CLF method, Microbiology Division.
10. M01_01AA “Calculations and expression of results” CLF method, Microbiology
Division.
11. M01_02VB Validation report.
12. M01_02VB 02 Validation report for the addition of TTC.
10 Attachments
Not applicable
22
AMENDMENTS AND COMMENTS COMPARED TO ISO NORM
It has been found that the butter does not form a good emulsion in BPW. A fat layer is clearly
visible which might prevent the suspension of bacteria in the BPW. According to the ISO norm,
the emulsifier sorbitanmonooleat (Tween 80) is added to BPW in 1 to 10 g/l. However in the
internal validation test the concentration of 1 to 10 g/L was found to be insufficient to emulsify the
butter/oil-containing BPW solution. To obtain a well-soluble and homogenous emulsion, 5 ml
autoclaved Tween 80 (description of the product see below) has to be added to 90 ml BPW in a
correspondingly higher concentration of 50 g/l.
NOTES:
1. The most common commercially available sorbitanmonooleat is Tween 80. The Tween 80 used in CLF is in
liquid form (1 liter =1.07 kg; Merck, 8.22187.2500).
2. Tween 80 must be autoclaved before use.
3. In the butter sample treated in this method, Tween 80 is supplemented in 5 ml/90 ml BPW.
4. The dried pre-poured PCA medium should be warmed to 45°C before spreading.
ISO based:
Generally PCA is used as the standard medium for TVC for all products.
ISO based:
According to ISO 4833-1:2013, skimmed milk powder is added to PCA at 1.0 g/L of the
culture medium when dairy products are examined. The skimmed milk powder shall be
free from inhibitory substances. MPCA (Milk plate count agar) containing antibiotic free
skim milk in 1.0 g/L is commercially available and provided by producers like OXOID.
Because most milk and milk products contain skim milk in a relative high concentration
themselves, the MPCA agar is thus recommended only when the sample dilution is ≥
1:1000.
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Deviation from ISO:
The TTC supplementation in PCA represents an option for TVC determination in case the
colonies are difficult to read. The red colorization caused by reduction of TTC facilitates
the visibility of colonies in difficult matrices.
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BACILLUS CEREUS ENUMERATION
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Modifications
This method is based on ISO 7932, 2004-12.
The following modifications have been performed:
MYP agar plates are stored for 4 days at room temperature
confirmation through identification with biochemical test kit
NOTE:
In accordance with ISO and AOAC, this method does not discriminate between B. cereus and the other
members of the B. cereus group, which are B. mycoides, B. anthracis and B. thuringiensis.
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4.1 MYP
90 ml MYP-b + 10 ml EY+ 1 ml polymyxin. The polymyxin concentration in the MYP has
to be 100 IU/ml. Pour plates (Ø 14 cm) with about 40-50 ml MYP. Dry the plates before
use in an incubator at 37-55°C until the surface is dry (30-45 min. for a full incubator).
5 Equipment
Usual microbiological equipment
Sterile spreaders
6 Procedure
6.1 Detection
1. Prepare a resuscitated sample, a suitable dilution series dependent on the presumed
contamination level of the sample (see method M01_01ME). The number of B.cereus
colonies on a plate should not exceed 50.
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2. Pipette the appropriate volume of (diluted) sample on one or more dried MYP plates
so that the sample can be absorbed by the MYP agar (for example pipette 2 times
0.5 ml onto 2 large plates).
3. Distribute the liquid evenly over the surface with a sterile spreader. During incubation
the surface of the plate should not be moist to prevent spreading of colonies.
4. Incubate the inverted plates for 42-48 h at 30 ± 1°C.
After 42-48 h the colonies and precipitation zone can be rather large. This is why
separate colonies are hard to distinguish. Therefore, count the typical colonies after
24 h of incubation after which the plates are further incubated.
5. Count the typical colonies:
Typical colonies are: large, white to pink, irregular, dull and ruffled or rhizoid (mould
like) of appearance and generally surrounded by a white to pink precipitation zone of
varying density.
Distinct yellow colonies are not B. cereus.
When the typical characteristics are not clear, suspected colonies can be confirmed
using one of the confirmation procedures described below.
NOTES:
Because spores can survive 70% alcohol, it is preferred to use disposable spreaders or dry air sterilised
spreaders.
As the colony morphology (form, surface, and color) is an important feature to distinguish between B. cereus
and competitive flora, spread plates have to be used instead of pour plates.
If the plates contain numerous mannitol fermenting microorganisms leading to the production of acid (and so
the color changes to yellow), the pink color of B. cereus colonies may be reduced or disappear entirely.
Some B. cereus strains produce only little or no lecithinase. Colonies of these strains will not be surrounded
by a precipitation zone. These colonies can be subjected to confirmation tests.
6.2 Confirmation
For colonies with typical growth, a confirmation is not necessary. In case the examination
is difficult due to the presence of many acid forming colonies, suspected colonies can be
transferred to fresh MYP agar to verify the typical characteristics.
Use well isolated colonies for the confirmation. When it is not possible to select well
isolated colonies, make a pure streak on MYP, tryptone soy agar (TSA) or blood agar
(BA) and incubate the plates at 30 ± 1°C.
Choose one of the two confirmation procedures described below:
Haemolysis
1. The suspected colony is streaked onto BA.
2. The plates are incubated at 30 ± 1°C for 24 ± 3 h.
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NOTE:
Haemolysis test is the confirmation procedure proposed by the ISO Technical Committee at the moment.
8 Validation
See validation report M01_03VB.
9 References
The above mentioned method is based on the following references, but does not
necessarily reflect the exact methodologies.
1. AOAC Official methods of analysis, 1995, Microbiological methods, Chapter 17,
p. 52-55
2. Beumer R. 1998, Confirmation of B. cereus” Nederlands normalisatie instituut, Ref:
nnidoc. 370009/98-62, 5p.
3. Harmon, S. M., Goepfert, J.M. and Bennett, R.W. “Bacillus cereus” In: “Compendium
of methods for the microbiological examination of foods”. third ed., Vanderzant, C.
and Splittstoesser, D.F. (Ed), American Public Health Association, Washington, 1992,
page 593-604.
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Not applicable
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AMENDMENTS AND COMMENTS COMPARED TO ISO NORM
Table 1: Biochemical and morphological differentiation characteristics of members of presumptive Bacillus cereus
group
Lecithinase + weak + + + +
Haemolysis + - + + +
Mannitol - - - - -
Motility + - - + Not determined
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Atypical Bacillus cereus
Although formation of pink colonies surrounded by precipitate zone and positive reaction in
haemolysis test are regarded as typical for presumptive Bacillus cereus group, some strains of B.
cereus produce only little or no lecithinase. Colonies of these strains will not be surrounded by a
precipitation zone or surrounded by a narrow precipitation zone (see picture 1). However it has
been observed that the zone became bigger when the MYP plate is incubated longer. These
strains give an atypical morphological image on MYP medium and thus have to be subjected to
confirmation tests.
It is notable that the width of a haemolysis zone can vary: a narrow and unclear zone is shown in
a haemolysis test of these atypical Bacillus cereus strains (see picture 2). The zone area could
be enlarged in case of prolonged incubation of blood agar. For atypical Bacillus cereus strains a
confirmation using biochemical test kit or molecular biological tools is preferred.
Picture 1: growth of typical B. cereus (left) and atypical B. cereus (right) on MYP
Picture 2: haemolysis zone of typical B. cereus (left) and atypical B. cereus (right, in circle) on BA
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Protocols for B. cereus enumeration: ISO method and CLF method
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STAPHYLOCOCCUS AUREUS DETECTION
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S. aureus - + + +
S. intermedius - + + +
S. hyicus - + +/- -
S. epidermidis - + - +/-
Modifications
This method is based on norm method EN-ISO 6888-3, 2003-09 + AC: 2005-03.
Following modifications have been performed:
Utilization of GC broth without ingredient Tween 80 is also possible
The heating process of the GC-tubes before usage to expel air as described in
ISO 6888-3 is not necessary
Utilization of commercially available rapid latex test kit for the identification of
suspicious colonies
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4.2 GC
Add to 10 ml standard GC-b 0.1 ml filter sterilised potassium-tellurite solution (1.0 % filter
sterilised K2TeO3 solution or 1.2 % filter sterilised K2TeO33H2O solution, using a 0.22 m
filter).
Add to 10 ml double concentrated GC-b 0.2 ml filter sterilised potassium-tellurite solution.
The end concentration potasium tellurite in GC+ sample has to be 0.01%.
5 Equipment
Usual microbiological equipment
Anaerobic jars in which tubes are incubated
6 Procedure
6.1 Detection
1. Prepare a suitable dilution series of a resuscitated sample (see method M01_01ME).
2. Pipette 10 ml of the initial suspension to double concentrated GC. Prevent the
introduction of air while performing.
3. The tubes are anaerobically incubated for 42-48 h at 37 ± 1°C.
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NOTES:
The introduction of air in the GC tubes before incubation should be prevented as much as possible: the
tubes are therefore not mixed.
To prevent the introduction of air when adding the sample, use one of the following techniques:
Put the pipette on the bottom of the tube and pull the pipette carefully out again. Do not blow out the
pipette.
Put the pipette against the wall of the tube, just above the surface of the GC. Carefully let the sample
flow out via the wall of the tube.
For the anaerobic incubation of the tubes either of the three methods has to be chosen:
Incubation in anaerobic jars with anaerobic generation kit.
The tubes are covered with an over layer (2 cm) of sterile, liquid paraffin.
The tubes are covered with an over layer of sterile water agar (1.5-2% agar in water, tempered at
45 ± 2°C).
4. When water agar has been used, the agar-clump is cut with a sterile loop or spoon.
When paraffin has been used, the tubes are not mixed on a vortex but with a Pasteur
pipette. After that about 1 ml of the suspension is taken out with the pipette and
transferred to a sterile tube. By doing so, take care that as little as possible paraffin is
transferred to the sterile tube.
5. The tubes are mixed (e.g.) on a vortex to obtain a homogenous suspension.
6. For the isolation of S. aureus one of the methods described below is used.
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NOTE:
The double halo is sometimes invisible in atypical colonies. Atypical colonies are often seen in milk products,
shrimps and poultry which are contaminated with coagulase positive Staphyloccoci.
6.2 Confirmation
Suspected colonies are further confirmed by means of a coagulase test or a biochemical
identification test kit or molecular biological confirmation tools.
1. A purification streak is made of the suspected colony on TSA or another, general
medium. In general, coagulation tests and biochemical identification test kits are only
reliable when colonies grown on a non-selective medium are used (see also
manufacturer’s description).
2. Confirmation tools:
Suspected grey-black colonies (with or without zone) are tested by a rapid
agglutination test. Suspected colonies which give a doubtful or positive result in the
agglutination test are further confirmed. Such colonies are tested on catalase activity
(see M01_08AA for catalase test) or gram strain (M01_05AA).
Colonies which are negative in the agglutination test or which are no cocci or show
negative results for catalase reaction are no S. aureus.
Coagulase reaction
The rabbit plasma coagulase reaction applies officially as the confirmation test in ISO
6888-1, 2 and 3. However the method is time-consuming and work-intensive.
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Commercially available, sufficient test kits (e.g. Staphaurex Plus*) are recommended
to use.
Biochemical identification test kits e.g. API-Staph
Molecular biological tools
For a further identification, MALDI TOF MS and 16S rRNA gene sequencing can be
applied.
8 Validation
See validation report M01_04VB.
9 References
The above mentioned method is based on the following references, but does not
necessarily reflect the exact methodologies.
1. Anon. 1993. Giolitti and Cantoni broth. Int. J. Food Microbiol. 17 (3), 247-248.
2. Gregson, D.B., Low, D.E., Skulnick, M., Simor, A.E. 1988. Problems with Rapid
agglutination methods for Identification of Staphylococcus aureus when
Staphylococcus saprophyticus is being present. J. Clin. Microbiol., 26 (7)., 1398-1399
3. International Dairy Federation. 1978. International Standard 60A, Detection of
coagulase positive staphylococci in dried milk.
4. International Dairy Federation. 1986. International Standard 138, Dried milk
enumeration of Staphylococcus aureus colony count technique at 37°C.
5. International Organization for Standardization. 1983. ISO 6888, Microbiology-General
guidance for enumeration of Staphylococcus aureus colony count technique.
6. Necker, D „Versuch zur St aureus Analyse“, 28-3-2000, CLF Central Laboratories
Friedrichsdorf GmbH, Microbiology Division, intern report ref. Nr: RD000903.
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7. Nederlands Normalisatie Instituut. 2000. pr EN ISO 6888-3 Horizontal method for the
enumeration of coagulase-positive Staphylococci (Staphylococcus aureus and other
species) – Part 3: MPN technique for low numbers“ april 2000, Doc. ISO/TC 34/SC9
N415. NEN Doc. nr. 00-12.
8. Weers-Pothoff G., Moolhuijzen C.E.M., Bongaserts G.P.A. „Comparison of seven
coagulase tests for identification of Staphylococcus aureus“ 1987, Eur. J. Clin.
Microbiol. Vol 6, no 5, p. 589-591.
9. M01_01ME “Sample preparation and dilution”. CLF method, Microbiology Division
10. Catalase-Test, CLF-procedure M01_08AA.
11. M01_01AA “Calculations and expression of results” CLF method, Microbiology
Division.
12. International Organization for Standardization, 2003. EN ISO 6888-3: 2003-09 + AC:
2005-03 „Microbiology of food and animal feeding stuffs - Horizontal method for the
enumeration of coagulase-positive staphylococci - Detection and MPN technique for
low numbers”.
10 Attachments
Not applicable
46
AMENDMENTS AND COMMENTS COMPARED TO ISO NORM
47
48
STAPHYLOCOCCUS AUREUS ENUMERATION
49
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S. aureus - + + +
S. intermedius - + + +
S. hyicus - + +/- -
S. epidermidis - + - +/-
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5 Equipment
Usual microbiological equipment
Sterile spreaders
6 Procedure
6.1 Enumeration
S. aureus
BPA: round, black or grey, shiny, convex colonies, surrounded by a double halo: inside a
white precipitation zone, surrounded by a clear zone.
RPF: coagulase positive Staphylococci (S. aureus and some other Staphylococci spp)
show grey-black but sometimes white colonies with a turbid zone.
NOTE:
Validation test have shown that when spread plates were used, higher counts were obtained than when pour
plates were used. In addition it is easier to recognise and isolate suspected colonies from a spread plate.
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To decrease the detection limit to 1 cfu/ml for liquid products or to 10 CFU/g for dry products, 1 ml initial
suspension can be spread on 2 large agar plates.
6.2 Confirmation
Suspected colonies are further confirmed by means of a coagulase test or a biochemical
identification test kit or molecular biological confirmation tools.
1. A purification streak is made of the suspected colony on TSA or another, general
medium. In general, coagulation tests and biochemical identification test kits are only
reliable when colonies grown on a non-selective medium are used (see also
manufacturer’s description).
2. Confirmation tools:
Suspected grey-black colonies (with or without zone) are tested by a rapid
agglutination test. Suspected colonies which give a doubtful or positive result in the
agglutination test are further confirmed. Such colonies are tested on catalase activity
(see M01_08AA for catalase test) or gram strain (M01_05AA).
Colonies which are negative in the agglutination test or which are no cocci or show
negative results for catalase reaction are no S. aureus.
Coagulase reaction
The rabbit plasma coagulase reaction applies officially as the confirmation test in ISO
6888-1, 2 and 3. However the method is time-consuming and work-intensive.
Commercially available, sufficient test kits (e.g. Staphaurex Plus*) are recommended
to use.
Biochemical identification test kits e.g. API-Staph
Molecular biological tools
For a further identification, MALDI TOF MS and 16S rRNA gene sequencing can be
applied.
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8 Validation
Necker, D. „ Test for Baird Parker (BPA) Agar count method“ 18-9-2000, CLF Central
Laboratories Friedrichsdorf GmbH, Microbiology Division, intern report ref. Nr: RD003603.
See Validation report M01_05VB.
9 References
The above mentioned method is based on the following references, but does not
necessarily reflect the exact methodologies.
1. Gregson, D.B., Low, D.E., Skulnick, M., Simor, A.E. 1988. Problems with Rapid
agglutination methods for Identification of Staphylococcus aureus when
Staphylococcus saprophyticus is being present. J. Clin. Microbiol., 26 (7)., 1398-
1399.
2. Europäisches Komitee für Normung. 1999. EN ISO 6888-1 deutsche Fassung,
Horizontales verfahren für die Zählung von koagulase-positiven Staphylkokken
(Staphylococcus aureus und andere Spezies).
3. Necker, D. „ Test for Baird Parker (BPA) Agar count method“ 18-9-2000, CLF Central
Laboratories Friedrichsdorf GmbH, Microbiology Division, intern report ref. No:
RD003603.
4. Weers-Pothoff G., Moolhuijzen C.E.M., Bongaserts G.P.A. „Comparison of seven
coagulase tests for identification of Staphylococcus aureus“ 1987, Eur. J. Clin.
Microbiol. Vol 6, no 5, p. 589-591.
5. M01_01ME “Sample preparation and dilution”. CLF method, Microbiology Division.
6. Catalase-Test, CLF-procedure M01_08AA.
7. M01_01AA “Calculations and expression of results” CLF method, Microbiology
Division.
10 Attachments
Not applicable
56
AMENDMENTS AND COMMENTS COMPARED TO ISO NORM
Higher bacterial count obtained using spread method than pour method
Spread method is defined officially in ISO 6888-1 using BPA medium, while pour method is
described in ISO 6888-2 where RPF is used.
However in the validation test significant higher numbers of S. aureus were detected on both
media BPA and RPF when using the spreading method (see M01_05VB). As a result the spread
method for S. aureus enumeration is adopted in the current method M01_05ME regardless of the
medium applied.
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Protocols for S. aureus enumeration: ISO method and CLF method
58
YAEST AND MOLDS ENUMERATION
59
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RIDA®COUNT
RIDA®COUNT card consists of a dehydrogenated YGC media which is additionally
supplemented with TTC. The reduced form of TTC is visible by a red colorization.
These red spots appear before the actual colonies are visible. Consequently the
incubation time can be reduced to 72 h.
Tetrazolium: colorless, soluble in water 2 reduction steps Formazan: red, insoluble in water
Modification
This method is based on DIN EN ISO 6611:2004-10 with the following modifications:
The enumeration is performed after 5 days but there is also an option to count the
colonies already after 4 days.
If the plates are not countable after 5 days because of too much growth, the next
dilution will be taken or the result after 4 days will be used.
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5 Equipment
Usual microbiological equipment
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6 Procedure
6.1 Enumeration
Mould
Mould
Yeast
NOTE:
®
Strongly-colored matrices like chocolate can not be analyzed with the RIDA COUNT method!
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6.2 Confirmation
The identity of doubtful colonies can be investigated by microscopic examination.
For a reliable identification on species level it is advised to perform the identification with
molecular biological tools e.g. 16S rRNA gene sequencing.
NOTE:
Prevent the opening of dishes on which molds or yeasts are grown because some
are infectious or provoke allergic responses. Furthermore, spreading of the mold
spores into the laboratory should be prevented. When the dish has to be opened
for confirmation, take precaution measures to prevent spreading.
Secondary mold colonies may develop when the plates are moved or turned before the
end of the incubation period. Secondary colonies develop by outgrowth of spores of the
molds. These secondary molds should not be counted.
NOTE:
8 Validation
See validation report M01_06VB and M01_06VB02.
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9 References
The above mentioned methods are based on the following references but do not
necessarily reflect the exact methodologies.
1. International Dairy Federation, “IDF standard 94B - Milk and milk products
Enumeration of yeasts and moulds (colony count at 25°C)”, 1990.
2. International Organization for Standardization, “ISO 7698 - Cereals, pulses and
derived products - Enumeration of bacteria, yeasts and moulds”, 1990.
3. International Organization for Standardization, “ISO 7954 - Microbiology - General
guidance for enumeration of yeasts and moulds - Colony count technique at 25°C”,
1987.
4. International Organization for Standardization, “ISO 6611/IDF 94 – Milk and milk
products – Enumeration of colony-forming units of yeasts and/or moulds – Colony-
count technique at 25°C, 2004.
5. Marquart, P.J.; Weenk, G.H “Comparison Mould count 22°C and 30°C”, 1991,
Nutricia report PJM/SN/4410.
6. Mislivec P.B., Beuchat L.R., Cousin M.A., Chapter 16, “Yeast and moulds” in:
“Compendium of methods for the microbiological examination of foods” C.
Vanderzandt, D.F. Splittstoesser (eds), 1992, American Public Health Association,
Washington, p.239-249.
7. M01_01ME “Sample preparation and dilution”. CLF method, Microbiology Division.
8. M01_01AA “Calculations and expression of results” CLF method, Microbiology
Division.
9. DIN 10186 “Microbiological analysis of milk – Enumeration of yeasts and moulds –
Reference method”.
10 Attachments
Not applicable
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AMENDMENTS AND COMMENTS COMPARED TO ISO NORM
67
Protocols for yeast and molds: ISO method and CLF method
68
ENTEROBACTERIACEAE DETECTION AND MPN
69
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Enterobacteriaceae – Detection/MPN
V4 (16.04.10) Culture media and reagent are not tested with ecometrie
V5 (17.02.14) Modern biological Identification tools have been added to 6.2
Most probable number (MPN) table added
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5 Equipment
Usual microbiological equipment
6 Procedure
NOTE:
For MPN enumeration, inoculate an appropriate number of flasks/tubes with the same dilution depending on
the desired accuracy of the results. As a general rule, the technique specified requires three flasks or tubes
per dilution.
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NOTE:
The selectivity of VRBG diminishes after 24 hours incubation and organisms previously suppressed may
exhibit growth.
6.2 Confirmation
The confirmation of Enterobacteriaceae is optional:
1. Make a pure streak of a well isolated colony onto a TSA plate and incubate at 30 ±
1°C for 18-24h.
2. Test the colony by oxidase- and catalase- reaction and gram staining.
3. Identify well isolated colonies using a biochemical identification test kit (API 32E or
API 20E).
4. For further identification, 16S rRNA gene sequencing and MALDI TOF MS are
recommended.
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8 Validation
See validation report M01_07VB.
9 References
The above mentioned method is based on the following references, but does not
necessarily reflect the exact methodologies.
1. International Organisation for Standardisation, “ISO 21528, Horizontal methods for
the detection and enumeration of Enterobacteriaceae – Detection and enumeration
by MPN technique with pre-enrichment” 2004.
2. Mossel, D.A.A, Eelderdink I. Koopmans, M, Rossem van F. “Influence of carbon
source, bile salts and incubation temperature on recovery of Enterobacteriaceae from
food using MacConkey-type agars” Journal of Food Protection, 1979, vol. 42, no. 6, p.
470-475.
3. Post D.E. “Food borne pathogens monograph number 5 – Escherichia coli, Shigella
species” Oxoid, March 1998, p. 23-24.
10 Attachments
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11 Most probable number (MPN) table for dilution in triplicate for 1 g, 0.1g and
0.01 g. (EN ISO 7218:2007)
Number of positive results MPN in CFU/ g Confidence interval ≥ 95%
76
AMENDMENTS AND COMMENTS COMPARED TO ISO NORM
77
Protocols for EB detection: ISO method and CLF method
78
CLOSTRIDIUM PERFRINGENS DETECTION
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To confirm the suspicious colonies, at least one of three tests has to be applied:
1
CAMP: abbreviation for the first persons to describe the co-hemolytic effect of the group B streptococci: Christie,
Atkins, and Munch-Petersen
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C. Biochemical tests
Lactose fermentation, gelatin liquefaction, nitrate reduction, and immobility are
characteristic of Cl. perfringens.
Modifications
This method is based on the standard method EN ISO 7937:2004.
Following modifications have been applied:
Additional selective pre-enrichment in RPM for 18-24 h at 46°C (see Erickson JE,
Deibel RH, 1978, Appl. Environ. Microbiol. pp 567-571).
Confirmation methods using reverse CAMP test which is based on the standard
method DIN 10103:1993 and/or biochemical test kits (Rapid ID 32A) and/or molecular
biological tools
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4.1 RPM
Prepare test tube of at least 40 ml with 10 ml RPM base according to manufacturer’s
instructions.
To 500 ml Crossley milk, prepared according to manufacturer’s instructions, 7.5 ml of a
1% filter sterilized neomycin-sulfate solution and 12.5 ml of a 0.1% filter sterilized
polymixin – B sulfate solution are added.
Pipette 10 ml of Crossley milk into each test tube with 10 ml RPM base. Before adding
the sample, the test tubes are warmed in a water bath (approx. 45 ºC) and the medium is
then mixed well.
5 Equipment
Usual microbiological equipment
Anaerobic jars in which tubes are incubated
6 Procedure
6.1 Detection
1. Prepare a suitable dilution series from a resuscitated sample (method M01_01ME)
2. Pipette 10 ml of the (diluted) sample into the RPM test tube. Draw the pipette up
slowly to empty it into the test tube. The pipette is not purged.
3. Incubate the test tubes for 18-24 h at 46 ± 1°C.
4. Make a streak from suspicious test tubes (e.g. stormy fermentation, gas formation,
coagulation of the milk) using a sterile inoculation loop onto a freshly prepared and
dried TSC agar.
5. Apply an over-layer of TSC.
6. Incubate the agar at 37 ± 1°C for 18-24 h anaerobically.
7. Black colonies must be confirmed.
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Cl. perfringens: Forms gas (stormy fermentation) in the RPM test tubes.
Black colonies are obtained in TSC agar.
On the surface of TSC over-layer, white-grey colonies with or
without a black center are expected.
NOTES:
The TSC plate should be exposed to air as shortly as possible. Slides with suspicious colonies are returned
to anaerobic jars. The slides are held under anaerobic conditions until the analysis is completed.
Cl. perfringens can be inactivated if they are stored at low temperatures for a long period.
When the coating is placed on the TSC plate, it is possible that some of the colonies develop on the surface.
These colonies are white-grey, with or without a black center.
6.2 Confirmation
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S. agalactiae S. agalactiae
(indicator strain) (indicator strain)
“Arrowhead-
shaped” double
hemolysis
Picutre 1: (a) Placement of the inoculation lines for the reverse CAMP test, (b) Diagram of the arrowhead-
shaped double hemolysis that confirms Clostridium perfringens
NOTES:
A streak of Streptococcus agalactiae can be stored in a refrigerator at 4-8°C for 1 week and be used for
conducting the reverse CAMP test.
Biochemical characteristics
For every colony to be confirmed, a MN and a LG test tube is placed in a boiling water
bath for 10 min (to remove air bubbles) and cooled to room temperature. This is not
necessary if freshly prepared test tubes (same day) are used.
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1. Inoculate a suspected colony into a MN and a LG test tube by a deep straight stab.
2. The test tubes are incubated at 37 ± 1°C for 18-24 h in an anaerobic jar.
3. The test tubes are checked for growth along the puncture: mobile bacteria show
scattered growth in the MN test tube. Immobile bacteria show growth only at the
puncture in the MN test tube.
4. The MN test tube is checked for the presence of nitrite:
Two drops each of Nit 1 and Nit 2 reagent are added to the test tube. If a red color
appears in the medium within 15 min, the reduction from nitrate to nitrite is confirmed.
If no red colouring occurs after 15 min, a small amount of zinc powder is added to the test
tube.
If no red colouring occurs within 10 min after adding zinc powder, no nitrate was reduced.
5. The LG test tube is kept at 0-5°C for 1 h before reading.
6. The LG test tube is checked for lactose fermentation. Fermentation causes the color
of the medium to change to yellow. Fermentation is also frequently associated with
gas formation.
7. The LG test tube is tested for liquefaction of the gelatin:
If the test tube is fluid after the cooling phase, hydrolysis of gelatin has taken place.
If the test tube has solidified again after the cooling phase, it is incubated again for
18-24 h at 37 ± 1°C. The test tube is again kept at 0-5°C for 1 h and then analyzed. The
total incubation time of the LG test tube should not be longer than 44 h.
Cl. perfringens: nitrate positive, immobile, lactose and gelatinase positive.
NOTES:
As the MN medium is semi-solid, a straight stab is often difficult. Therefore, there is often growth in one
direction. This is assessed as immobile.
Some Cl. perfringens strains are not able to hydrolyze gelatin within 48 h. But if all other reactions are
positive (RPM, TSC, lactose, nitrate, and mobility), the sample is considered positive because of the
confirmation of the other tests.
Cl. absonum and Cl. sardiniensis can hydrolyze gelatin when incubated longer than 44 h. Therefore the LG
test tube should not be incubated any longer than 44 h.
Cl. bifermentans is lactose negative, gelatin positive, mobile, and nitrate negative .
If the result is not clear using one of the confirmation methods A, B, C or D, at least one more confirmation
method should be additionally applied.
The reliability of the confirmation reaction is 96% using the reverse CAMP test and 93.96% using
the Rapid ID 32A test kit.
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8 Validation
See validation report M01_10VB and M01_10VB_addendum 1.
9 References
The method described here refers to the references listed. But it does not necessarily
reflect the exact methods.
1. Boer E. de, Boot E.M. “Comparison of methods for isolation and confirmation of
Clostridium perfringens from spices and herbs”, Journal of food protection, 1983, vol.
46, No. 6 (June), p. 533-536.
2. International Organisation for Standardization, 2004. EN ISO 7937 “Microbiology of
food and animal feeding stuffs - Horizontal method for the enumeration of Clostridium
perfringens - Colony-count technique”, 2004-08.
3. Erickson J.E., Deibel R.H. “New medium for rapid screening and enumeration of
Clostridium perfringens in foods”, October 1978, Applied and environmental
microbiology, p. 567-571.
4. FAO “Chapter 17 - Clostridium perfringens” in: “Manual of food quality control, vol. 4:
microbiological analysis”, W. Andrews (ed), 1992, Rome, FAO, p. 207-212.
5. Harmon S.M., and Kautter D.A. “Media for confirming Clostridium perfringens from
food and feces” 1978, Journal of Food Portection, vol. 41, p. 626-630.
6. Jeffrey E., Harmon S. M.“Chapter 16 Clostridium perfringens” In: “FDA bacteriological
analytical manual” FDA, 1995, 8th. edition, p. 16.01-16.06.
7. Post D.E. “Food-borne pathogens monograph number 4 - Clostridium perfringens,
Bacillus cereus” Oxoid, Unipath Limited, Basingstoke, England.
8. Schalch B., Eisgrubber H., Geppert P., Stolle A.“Vergleich von vier Routineverfahren
zur Bestätigung von Clostridium perfringens aus Lebensmitteln” Archiv für Lebens-
mittelhygiene, Januar/Februar 1996 vol. 47, No 1 p. 27-30.
9. Weenk G., Brink J.v.d .“New confirmation test for Clostridium perfringens” Ref no
170/GW/mms, 19-4-1989, Internal memo Nutricia.
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10 Attachments
Galactose 5.0
Glycero 5.0
Lactose 10.0
Gelatin 120.0
91
AMENDMENTS AND COMMENTS COMPARED TO ISO NORM
The selective enrichment in RPM followed by streaking on TSC agar has shown a high sensitivity
and a high specificity for Cl. perfringens detection in the validation tests (see M01_10VB).
CAMP test, API Rapid ID 32A and 16S rRNA gene sequencing as confirmation
options
The reverse CAMP test represents a reliable and easy test system to confirm a Cl. perfringens
strain with a sensitivity of 96%. Only one isolate from milk powder with cereals was identified as
Cl. perfringens with both API and 16S rRNA gene sequencing. In the validation tests the API
Rapid ID 32A showed a sensitivity of approximately of 94%.
In case of doubtful identification results, it is recommended to apply more than one identification
system to ensure a reliable outcome.
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ENTEROCOCCI DETECTION
95
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Enterococci – Detection
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Modifications
This method is based on: Dijk, R, Grootenhuis A “Microbiologie van voedingsmiddelen -
methoden, principes en criteria” Keesing Noordervliet, Houten, 1999, p.157-158.
Following modification has been performed:
Selective pre-enrichment in KAAB
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Sodium azide
KAAA and KAAB contain sodium azide. This substance is highly toxic. Precautions should
be taken to avoid direct contact. Especially the inhalation of fine dust during preparation
of dehydrated media should be avoided. Therefore gloves and a mouth cap should be
worn.
Gloves
Gloves must be inspected prior to use. Use proper glove removal technique (without
touching glove's outer surface) to avoid skin contact with this product.
Respiratory protection
Wear respiratory protection. Avoid the creation of dust. Avoid inhaling dust. Ensure
adequate ventilation.
5 Equipment
Usual microbiological equipment
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6 Procedure
6.1 Detection
1. Prepare of a 1:10 resuscitated sample, a suitable dilution series dependent on the
presumed contamination level of the sample (see method M01_01ME).
2. Pipette 1 ml or 0.1 ml of the appropriate dilution into a tube which contains 10 ml
KAAB.
3. Incubate the tube at 37 ± 1°C for 48 3 h.
4. Read the tubes: tubes which show any blackening and/or contain coagulated sample
together with a white color are suspected and need to be further analysed. All other
tubes are regarded as negative for Enterococci and do not need to be further
analyzed.
5. Streak a loopful of culture of the suspected tubes onto a pre-dried KAAA plate.
6. Incubate the KAAA plates up side down at 37 ± 1°C for 18-24 h.
7. Enterococci are small, round, smooth, grey- white colonies, surrounded by a black
zone.
NOTES:
6.2 Confirmation
A representative number of suspected colonies have to be confirmed if necessary. One or
more of the following tests have to be performed.
Microscopic examination
Catalase test
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Identify the isolate by using a biochemical identification test kit (e.g. API 20 Strep or rapid
ID 32 Strep).
For further identification, 16S rRNA gene sequencing or MALDI TOF MS can be applied.
NOTE:
Lactobacilli are rods and do not grow at 45°C. Bacilli are rods and are catalase positive.
8 Validation
See validation report M01_12VB.
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9 References
The above mentioned method is based on the following references, but does not
necessarily reflect the exact methodologies.
1. Anon. “Pharmacopeia of Culturemedia for Food Microbiology”. Int. J. Food Microbiol.
1987, vol. 5, p. 221.
2. Barrow, G.I. and Feltham, R.K.A. In: “Cowan and Steel's Manual for the Identification
of Medical Bacteria” Cambridge University Press, 1993
3. Dijk, R, Grootenhuis A “Microbiologie van voedingsmiddelen - methoden, principes en
criteria” Keesing Noordervliet, Houten, 1999, p.157-158
4. Hardie, J.J..Genus Streptococci. In: Sneath, P.H.A. (Ed) “Bergey's Manual of
Systematic Bacteriology 2”, Williams & Wilkins, Baltimore, 1986, p. 1043-1071.
5. International Organisation for Standardisation, “ISO 7899/1, Waterquality - Detection
and enumeration of faecal Streptococci” 1984.
6. Mossel, D.A.A., Bijker P.G.H. und Eelderink I..”Streptokokken der Lancefield-Gruppe
D in Lebensmitteln und Trinkwasser - Ihre Bedeutung, Erfassung und Bekämpfung”
Archiv. für Lebensmittelhygiene, 1978, vol. 29, p. 121-127.
7. M01_08AA “Catalase test” CLF method, Microbiology Division.
10 Attachments
Not applicable
102
AMENDMENTS AND COMMENTS COMPARED TO ISO NORM
For Enterococci two ISO methods are available: ISO 7899-1:1998 for intestinal Enterococci in
surface and waste water (MPN in liquid medium) and ISO 7899-2:2000 for intestinal Enterococci
in surface and waste water (membrane filtration).
This means no suitable ISO reference is available for detection and enumeration of Enterococci
in infant formula. The relevant CLF methods for Enterococci are M01_12ME (Enterococci
detection) and M01_13ME (Enterococci enumeration).
The ISO references mentioned above are the only available methods; any lab will have to adapt
the methods somehow to the matrix infant formula.
Among the two ISO norms, the ISO 7899-2:2000 “Water quality - Detection and enumeration of
intestinal enterococci – Part 2: Membrane filtration method” is closer to M01_13ME but the
requested agars are different (Slanetz-Bartley agar combined with Bile Aesculine Acide agar, see
table 2 and 3) from the one used in CLF method (KAAA, see Table 1). The Slanetz-Bartley agar
is less specific compared to KAAA and the Enterococci count can be overestimated in case of
the presence of background flora or probiotic strains.
Kanamycinsulfat 0.02 g
Aesculin 1.0 g
Agar 15 g
103
1
Table 2. Composition of Slanetz-Bartley medium in ISO 7899-2:2000
Glucose 2.0 g
Agar 8 to 18 g
1
TTC solution: dissolve 2,3,5-triphenyltetrazolium chloride in water in 1 g/100 ml. Sterilize by filtration. Add
10 ml TTC solution to the Slanetz-Bartley medium.
Aesculin 1.0
Agar 8 to 18
104
Protocols for Enterococci detection: M01_12ME and ISO norm
105
106
ENTEROCOCCI ENUMERATION
107
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Sodium azide
KAAA and KAAB contain sodium azide. This substance is highly toxic. Precautions should
be taken to avoid direct contact. Especially the inhalation of fine dust during preparation
of dehydrated media should be avoided. Therefore gloves and a mouth cap should be
worn.
Gloves
Gloves must be inspected prior to use. Use proper glove removal technique (without
touching glove's outer surface) to avoid skin contact with this product.
Respiratory protection
Wear respiratory protection. Avoid the creation of dust. Avoid inhaling dust. Ensure
adequate ventilation.
5 Equipment
Usual microbiological equipment
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6 Procedure
6.1 Detection
1. Prepare of a 1:10 diluted sample and resuscitate it for 2 h, a suitable dilution series
dependent on the presumed contamination level of the sample (see method
M01_01ME).
2.1 Pipette 1 ml of sample dilution into a Petri dish.
Add about 15 ml KAAA (tempered at 45 ± 2°C), mix well and allow to solidify.
2.2 Optional spreading method:
Spread 1 ml of sample dilution on a pre-dried KAAA plate and distribute the sample
homogenously with a sterile spatula.
3. Incubate the KAAA plates upside down at 37 ± 1°C for 48 ± 3 h.
4. Count the typical colonies:
Enterococci are small, round, smooth, grey- white colonies, surrounded by a black
zone.
6.2 Confirmation
A representative number of suspected colonies have to be confirmed if necessary. One or
more of the following tests have to be performed.
Microscopic examination
Catalase test
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Identify the isolate by using a biochemical identification test kit (e.g. API 20 Strep or rapid
ID 32 Strep).
For further identification, 16S rRNA gene sequencing or MALDI TOF MS can be applied.
NOTE:
Lactobacilli are rods and do not grow at 45°C. Bacilli are rods and are catalase positive.
8 Validation
See validation report M01_13VB.
9 References
The above mentioned method is based on the following references, but does not
necessarily reflect the exact methodologies.
1. Anon. “Pharmacopeia of Culturemedia for Food Microbiology”. Int. J. Food Microbiol.
1987, vol. 5, p. 221.
113
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2. Barrow, G.I. and Feltham, R.K.A. In: “Cowan and Steel's Manual for the Identification
of Medical Bacteria” Cambridge University Press, 1993.
3. Dijk, R, Grootenhuis A “Microbiologie van voedingsmiddelen - methoden, principes en
criteria” Keesing Noordervliet, Houten, 1999, p.157-158.
4. Hardie, J.J..Genus Streptococci. In: Sneath, P.H.A. (Ed) “Bergey's Manual of
Systematic Bacteriology 2”, Williams & Wilkins, Baltimore, 1986, p. 1043-1071.
5. International Organisation for Standardisation, “ISO 7899/1, Water quality - Detection
and enumeration of faecal Streptococci” 1984.
6. Mossel, D.A.A., Bijker P.G.H. und Eelderink I..”Streptokokken der Lancefield-Gruppe
D in Lebensmitteln und Trinkwasser - Ihre Bedeutung, Erfassung und Bekämpfung”
Archiv. für Lebensmittelhygiene, 1978, vol. 29, p. 121-127.
7. M01_08AA “Catalase test” CLF method, Microbiology Division.
10 Attachments
Not applicable
114
AMENDMENTS AND COMMENTS COMPARED TO ISO NORM
For Enterococci two ISO methods are available: ISO 7899-1:1998 for intestinal Enterococci in
surface and waste water (MPN in liquid medium) and ISO 7899-2:2000 for intestinal Enterococci
in surface and waste water (membrane filtration).
This means no suitable ISO reference is available for detection and enumeration of Enterococci
in infant formula. The relevant CLF methods for Enterococci are M01_12ME (Enterococci
detection) and M01_13ME (Enterococci enumeration).
The ISO references mentioned above are the only available methods; any lab will have to adapt
the methods somehow to the matrix infant formula.
Among the two ISO norms, the ISO 7899-2:2000 “Water quality - Detection and enumeration of
intestinal enterococci – Part 2: Membrane filtration method” is closer to M01_13ME but the
requested agars are different (Slanetz-Bartley agar combined with Bile Aesculine Acide agar, see
table 2 and 3) from the one used in CLF method (KAAA, see Table 1). The Slanetz-Bartley agar
is less specific compared to KAAA and the Enterococci count can be overestimated in case of
the presence of background flora or probiotic strains.
Kanamycinsulfat 0.02 g
Aesculin 1.0 g
Agar 15 g
115
1
Table 2. Composition of Slanetz-Bartley medium in ISO 7899-2:2000
Glucose 2.0 g
Agar 8 to 18 g
1
TTC solution: dissolve 2,3,5-triphenyltetrazolium chloride in water in 1 g/100 ml. Sterilize by filtration. Add
10 ml TTC solution to the Slanetz-Bartley medium.
Aesculin 1.0
Agar 8 to 18
116
Protocols for Enterococci enumeration: M01_13ME and ISO norm
117
118
SALMONELLA CONVENTIONAL
119
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5 Equipment
Usual microbiological equipment
6 Procedure
6.1 Detection
1. Weigh the sample in a 1:10 dilution in BPW.
For some samples this suspension has to be prepared according to a special
procedure (see Attachment 1).
2. Incubate the pre-enrichment at 37 ± 1°C for minimally 16 h and maximally 18 h.
3. Measure the pH value of the incubated BPW. In case the pH value decreases below
5.0 during incubation due to the growth of competitive flora, repeat the whole process
from point 1, but shorten the incubation time of the BPW to 8-10 h at 37 ± 1°C.
If the pH value decreased to less than 5.0 in spite of the shortened incubation time,
repeat the enrichment step with BPW + malachite green.
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NOTES:
The chance to find lactose-positive Salmonella is small. Therefore, the decision to continue the confirmation
of non-typical colonies has to be based on the overall results of the analyses and the sample information (e.g.
the results of the Diasalm method) and of the results of the selective media.
Sometimes Pseudomonas are able to grow on the selective media as well. As they do not ferment lactose,
the appearance could be the same as H2S-negative Salmonella. This can be tested by an oxidase test.
Salmonella are oxidase negative, while Pseudomonas are oxidase positive.
For lactose-positive, H2S-positive Salmonella, the blackening may not be visible due to the lactose
fermentation (acidification of the medium).
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6.2 Confirmation
1. Perform the confirmation only with pure cultures or well isolated colonies. When no
pure culture is obtained and no well isolated suspected colonies are available, some
suspected material has to be streaked onto a new plate of one of the isolation agars.
2. Incubate the plate at 37 ± 1°C for 24 ± 3 h. Repeat step 1 and 2 until well isolated
colonies are obtained which can be used for further confirmation.
3. Stab suspected colonies twice into the butt of one LIA tube and streak the slant.
Stab the colony once in the butt of a TSI tube and streak the slant.
4. Streak the same suspected colony onto a TSA plate or another non-selective agar.
5. Incubate the TSI and LIA tubes and the TSA plate at 37 ± 1°C for 24 ± 3 h.
6. Read the TSI and LIA tubes as described in Table 2.
7. When the LIA tube is typical or doubtful or when the TSI tube is typical, perform an
identification using a biochemical identification test kit like API 20E, API ID 32E or a
comparable reliable test kit. Perform the test with a well isolated colony from an
overnight incubated non-selective plate e.g.TSA.
For a further identification the molecular biological tools e.g. MALDI TOF MS and 16S
rRNA gene sequencing can be applied.
8. Serological tests can be carried out to obtain a quick result which can be used as a
direction whether the isolate will indeed be Salmonella or not. However, the results of
the serological test alone can not be used to exclude the presence of Salmonella.
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NOTES:
It is also possible to perform step 7 and 8 at the same time with or instead of the LIA and TSI tests.
Lactose-positive Salmonella will give none typical growth on TSI (yellow butt and yellow slant) but typical
growth on LIA. These isolates are also suspected for Salmonella.
Generally material of a non selective agar has to be used for serological tests. Perform the test exactly
according to the manufacturer’s description.
For lactose positive, H2S positive Salmonella, the blackening may not be visible due to the lactose
fermentation (acidification of the medium).
8 Validation
See validation report M01_14VB.
9 References
The above mentioned method is based on the following references, but does not
necessarily reflect the exact methodology.
1. International Organization for Standardization “ISO 6579:2002 Microbiology –
Horizontal method for the detection of Salmonella spp.”
2. International Organization for Standardization” ISO 6785: Milk and milk products -
Detection of Salmonella” 1985.
3. Van Schothorst, M. and Renaud, A.M. (1985). Malachite green pre-enrichment
medium for improved Salmonella isolation from heavily contaminated samples, J.
Appl. Bacteriol. 59, 223-230.
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4. Watson, D.C. and Walker, A.P. (1978). A modification of Brilliant Green Agar for
improved isolation of Salmonella, J. Appl. Bacteriol. 45, 195-204.
5. M01_01ME “Sample preparation and dilution” CLF method, Microbiology Division.
6. M01_01AA “Calculations and expression of results” CLF method, Microbiology
Division.
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10 Attachments
Product Procedure
Cocoa and cocoa-containing BPW + 50g/L casein or + 100 g/L skim milk powder (or
products (> 20%) after ca. 2 h incubation add 0.018 g/Ll malachite green, if
high number of accompanying flora is expected)
Acidic products and The pH value of BPW is not allowed to fall below 4.5
acidifying products after incubation.
a) 1.0-2.0% (g/v) CaCO3 can be added during
preparation of BPW to prevent a too strong decrease
of pH.
b) The pH is more stable if double-strength BPW is
used.
Salmonella do not grow well in viscous BPW, even when the samples can be well suspended.
129
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130
AMENDMENTS AND COMMENTS COMPARED TO ISO NORM
Black center
Light edges
Black precipitate
Metallic sheen
131
Protocols for Salmonella detection: ISO method and M01_14ME
132
SALMONELLA DIASALM
133
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Modifications
This method is based on DIN EN ISO 6579 (2002-07+ Amd. 1: 2007-07) “Microbiology of
food and animal feeding stuffs - Horizontal method for the detection of Salmonella spp.”.
Following modifications have been performed:
The selective enrichment in Rappaport-Vassiliades soya broth (RVS) and Muller-
Kauffmann broth with Tetrathionate and Novobiocin (MKTTn) is replaced by a
selective enrichment on Diasalm.
Lysin iron agar is used in addition for confirmation of suspicious colonies.
Hektoen enteric agar (HEA) is used as a second selective medium.
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5 Equipment
Usual microbiological equipment
6 Procedure
6.1 Detection
1. Weigh the sample in a 1:10 dilution in BPW.
For some specific samples the suspension is prepared according to a special
procedure (see Attachment 1).
2. Incubate the pre-enrichment at 37 ± 1°C for minimally 16 and maximally 18 h.
3. Measure the pH value of the incubated BPW. In case the pH value decreases to less
than 5.0 during incubation due to the growth of competitive flora, repeat the whole
process from point 1, but shorten the incubation time of the BPW to 8-10 h at 37 ±
1°C.
If the pH decreases to lower than 5.0 in spite of the shortened incubation, repeat the
enrichment step with BPW + malachite green.
4. Spot 3 drops of pre-enriched culture around the center of the Diasalm plate.
When using normal pipettes or Pasteur's pipettes, spot a small drop of fluid.
When using a plunger pipette, spot 15 l of fluid.
5. Incubate the Diasalm plates in a plastic bag at 42 ± 0.5°C for 24 ± 3 h. (Do not invert
the plates; incubate with cover up).
6. Read the Diasalm plates for the presence of Salmonella (see Table 1). If the plates
are negative after 24 h, re-incubate for another 24 ± 3 h at 42 ± 0.5°C.
7. When the Diasalm plates are negative after 48 h incubation, the sample is regarded
as negative for Salmonella spp.
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Lactose + typical Purple (and black spotted) colony and migration zone
Purple (and black spotted) colony without migration
Non-motile half-typical
zone
NOTE:
The pH value of the BPW after incubation is expected to be between 4.5 and 7.5. Higher or lower pH values
may inhibit the growth of Salmonella in the BPW and therefore the results are not reliable.
6.2 Confirmation
1. Isolate migrated colony material by stabbing a sterile needle or loop at the edge of
the migration zone of positive or doubtful Diasalm plates. Whenever colonies are not
migrated, cells are picked up from the center of the spot.
2. Streak the loop with culture on XLD or another selective medium of choice. Make a
fraction streak to obtain well isolated colonies. Pick up some new culture material for
each plate.
3. Incubate the plates at 37 ± 1°C for 24 ± 3 h.
4. Read the plates as described in Table 2.
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9. When the LIA tube is typical or doubtful or when the TSI tube is typical, perform an
identification using a biochemical identification test kit like API 20E, API ID 32E or a
comparable reliable test kit. Perform the test with a well isolated colony from an
overnight incubated non-selective plate e.g.TSA.
For a further identification the molecular biological tools e.g. MALDI TOF MS and 16S
rRNA gene sequencing can be applied.
10. Serological tests can be carried out to obtain a quick result which can be used as a
direction whether the isolate will indeed be Salmonella or not. However, the results of
the serological test alone cannot be used to exclude the presence of Salmonella.
Carry out serological tests (omnivalent or polyvalent Salmonella O-group antiserum)
as prescribed by the manufacturer.
NOTES:
The chance to find lactose-positive Salmonella is small. Therefore, the decision to continue the confirmation
of non-typical colonies has to be based on the overall results of the analyses and the sample information (e.g.
the results of the Diasalm method) and of the results of the selective media.
Sometimes Pseudomonas spp. are able to grow on the selective media as well. As they do not ferment
lactose, the appearance could be the same as H 2S-negative Salmonella. This can be tested by an oxidase
test. Salmonella are oxidase negative, while Pseudomonas are oxidase positive.
For lactose-positive, H2S-positive Salmonella, the blackening may not be visible due to the lactose
fermentation (acidification of the medium).
It is also possible to perform step 9-10 at the same time with or instead of the LIA and TSI tests.
Lactose-positive Salmonella will give none typical growth on TSI (yellow butt and yellow slant) but typical
growth on LIA. These isolates are also suspected for Salmonella.
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8 Validation
See validation report M01_15VB.
For Citrobacter amalonaticus as positive control see M01_14VB2_v01.
9 References
The above mentioned method is based on the following references, but does not
necessarily reflect the exact methodology.
1. Anon. (1993), Diagnostic Salmonella - Selective semisolid medium (DIASALM),
International Journal of Food Microbiology 17, 230-233.
2. Dijk, R, Grootenhuis A “Microbiologie van voedingsmiddelen - methoden, principes
en criteria” Keesing Noordervliet, Houten, 1999, p.189-196.
3. International Organization for Standardization “ISO 6579:2002 Microbiology –
Horizontal method for the detection of Salmonella spp.”
4. European Committee for Standardization “EN 12824 Microbiology of food and animal
feeding stuffs – Horizontal method for the detection of Salmonella (ISO 6579:1993
modified) “ 1997.
5. Landman W.J.M., Hartman E.G., Doornenbal P. “Salmonella-isolatie uit
pluimveemonsters: vergelijking diagnistic semi-solid salmonella agar (diasalm) en
rappaport vassiliades bouillon (rv)” De Ware(n) Chemicus, 1996, no 26, p. 234-237.
6. Oudenallen,v. A. (1992). Validation of non conventional methods for the detection of
salmonellae in foods. Nutricia Research report: RA004.mrd. 16-17.
7. Watson, D.C. and Walker, A.P. (1978). A modification of Brilliant Green Agar for
improved isolation of Salmonella, Journal of Applied Bacteriology 45, 195-204.
8. Zee v.d.H, de Boer E., and van Netten P (1990)., “Salmonella-isolatie met behulp van
modified semisolid rappaport-vassiliades (MSRV) medium” 1990, De Ware(n)
chemicus, vol. 20, p. 189-199.
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9. Zee, v.d.H. and Netten, v. P. (1991), Improved isolation of Salmonella enteridis from
poultry by the use of a semi-solid diagnostic salmonella medium (DIASALM), De
Ware(n) Chemicus 21, 180-189.
10. Zee v.d. H., Postma P., Vonk M. “Vergelijking van Porbelia PCR Salmonella testkit
met Diasalm en een gemodificeerde ISO methode” De Ware(n) Chemicus, 1996, no
26, p. 238-243.
10 Attachments
See Attachments 1 and 2 in M01_14ME.
143
AMENDMENTS AND COMMENTS COMPARED TO ISO NORM
M01_15ME does not include the second selective enrichment medium MKTTn. This is a
severe deviation from ISO 6579. However the number of strains which are not detected in
RVS is very limited but still includes some strains of S. typhi and S. paratyphi. Due to the
epidemiological situation a contamination with S. typhi and S. paratyphi is rather unlikely.
144
Protocols for Salmonella detection: ISO method and M01_15ME
145
146
SALMONELLA BARREL
147
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When thickeners, pre mixes or other products with a low nutrient value are analyzed,
about 75 g or 150 g (depending on sample mass) sterile milk powder is added to the
barrel to supply nutrients for microbiological growth.
Appropriate enzymes are recommended to use for thickeners (see M01_01ME) and/or
prepare a less than 10% sample suspension.
The BTW with sample has to be thin liquid.
5 Equipment
10 or 20 liter container (available at e.g. Nagle and Dispolab Asten)
Mixing device for 10 or 20 liter container (available at e.g. Heidolf or Boom Meppel).
1 or 2 L bottles
6 Procedure
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2. Weigh the appropriate amount of the salts into the barrel as described in Table 1
above.
3. Fill the barrel with about 2.5 L/5 L (lukewarm) water.
4. Add the sample. The barrel is first filled with about 2.5 L/5 L to prevent sedimentation
of the sample.
5. Fill the barrel with tap water to the appropriate volume.
6. For a 750 g/1500 g sample the barrel has to be filled up to 7.5 L/15 L (10% sample
solution w/v). It is also possible to use a 15% sample solution (w/v) which means 750
g/1500 g sample into 5 L/10 L of BTW. Compensate more or less sample with the
appropriate amount of water and salts.
7. After filling the barrel the temperature has to be minimally 20°C and may be up to
30°C.
8. The pH value of the suspended sample has to be 7.0 ± 0.5.
9. Mix the sample during 8 ± 0.5 h in the barrel at the local room temperature.
10. Transfer minimally 1.5 L/3 L from a 7.5 L/15 L filled barrel into a sterile container. The
sterile container may be filled for maximally 2 L. For other volumes in the barrel at
least 1 L for each 5 L in the barrel (20%) has to be transferred to a sterile container.
11. In case high amount of competitive flora is expected in the sample, add 1 ml 10%
MG solution per liter sample in the container. The final MG concentration has to be
0.1 g/L sample. The addition of MG suppresses the growth of gram positive flora.
12. Incubate the containers at 37 ± 1°C for 16-18 h.
NOTES:
During filling, the temperature of the barrel contents should never exceed 40°C when the sample is added.
Steps 3-6 describe the way the barrel will be filled in such a way that the sample is well suspended in the
BTW and the temperature is between minimally 20°C and maximally 30°C. Other ways of filling the barrel that
can achieve the same results are also possible.
When the incubation time in the barrel is shorter than 8 h, at least 3 l/ 6 l sample has to be taken from a 7.5 L
/ 15 L barrel for overnight incubation. In addition the temperature of the barrel during the complete incubation
has to be guaranteed to be at least 20°C. In any case it is not acceptable to incubate shorter than 7.5 h.
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NOTE:
The pH value of the BPW after incubation has to be 4.5-7.5. Higher or lower pH values may inhibit the growth
of Salmonella spp. in the BPW and the results are therefore not reliable.
8 Validation
See validation report M01_16VB.
9 References
The above mentioned method is based on the following references, but does not
necessarily reflect the exact methodology.
1. M01_01AA “Calculations and expression of results” CLF method, Microbiology
Division.
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AMENDMENTS AND COMMENTS COMPARED TO ISO NORM
Method M01_16ME to handle high sample volumes validated against the ISO
The method is based on a pre-enrichment step at room temperature over 8 h, followed by the
non-selective enrichment of only an aliquot of the pre-enriched sample.
The method is a severe deviation from the ISO requirements especially in the following points:
Pre-enrichment at room temperature is not selective or elective for Salmonella.
Background flora can overgrow Salmonella and cause false negative results. Usually the
background flora in the samples is very low so that this is in practice not really an issue. It
is nevertheless important to limit the pre-incubation time strictly up to 8-8.5 h but at the
same time to ensure a minimum incubation of 7.5 h. Contamination of the water used for
the pre-enrichment can influence the method.
The analysis of only an aliquot of the pre-enriched sample is not in line with the ISO and
although validated for the routine approach it cannot be guaranteed that the detection of
Salmonella is successful even in unlikely cases (e.g. exotic Salmonella strains).
155
Protocols for Salmonella detection: ISO method and M01_16ME
156
LACTOBACILLI ENUMERATION
157
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Lactobacilli – Enumeration
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1 Area of application
The method for the enumeration of Lactobacilli can be applied to products for human
consumption and animal foodstuff and water.
5 Equipment
Usual microbiological equipment
Anaerobic jars and microphilic equipment
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6 Procedure
6.1 Enumeration
1. Prepare a resuscitated sample, a suitable dilution series dependent on the presumed
contamination level of the sample (see method M01_01ME). The number of colonies
on a plate should not exceed 300 colonies.
2. Pipette 1 ml of the appropriate dilution into a Petri dish.
3. Pour approximately 15 ml of the MRS agar (tempered at 45 ± 2°C) into the Petri dish,
mix and allow to solidify.
4. Incubate the plates upside down for 72 ± 3 h at 37 ± 1°C in a micro-aerophilic
environment. This is achieved by incubating the plates in an anaerobic jar with a
micro-aerophilic kit.
5. Count all colonies. Spreading colonies are counted as single colonies. If less than
one quarter is overgrown by spreading colonies, count the colonies on the unaffected
part of the plate and calculate the corresponding number for the entire plate. If more
than one-quarter of the surface is overgrown by spreading colonies, re-analyze the
sample (using a surface layer).
6.2 Confirmation
1. Pick up a representative number of well isolated colonies and make pure streaks on
MRS agar and TSA and incubate the agars at 37°C.
2. Examine the isolates under the microscope, perform test for gram stain and catalase
reaction.
Lactobacilli are gram positive, catalase negative, long, slim, non spore-forming rods.
3. For a further confirmation use a biochemical identification test kit (e.g. API 50 CHL).
Molecular biological confirmation tools such as 16S rRNA gene sequencing and
MALDI TOF MS can be applied as well.
NOTE:
To determine the number of lactobacilli in a fermented or probiotic product where the number of lactobacilli will
outnumber the amount of other microbiological flora to a great extent, confirmation may not be necessary or
can be performed up to step 6.2.2.
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8 Validation
See validation report M01_18VB.
9 References
The above mentioned method is based on the following references, but does not
necessarily reflect the exact methodologies.
1. M01_01AA “Calculations and expression of results” CLF method, Microbiology
Division.
2. International Standard ISO 15214, 1998: Microbiology of food and animal feeding
stuffs – Horizontal method for the enumeration of mesophilic lactic acid bacteria –
Colony-count technique at 30°C, Genève.
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AMENDMENTS AND COMMENTS COMPARED TO ISO NORM
163
164
STERILITY TESTING
165
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Sterility test
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Sterility test
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Sterility test
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5 Equipment
Usual microbiological equipment
6 Procedure
6.1 Detection
1. Incubate a representative number of samples from the batch under examination for 7
days at 30°C for examination of mesophilic and acidophilic microorganisms and at
55°C for thermophilic microorganisms. For milk-based products, incubate additionally 2
samples per batch for 15 days at 30C, to fulfill the EU legislation.
2. After incubation judge the appearance of the packed products before opening (gas
formation).
3. Open the packaging aseptically as follows:
Crown cork bottle
Disinfect the crown cork and the opener with 70% alcohol.
Jar
Upon opening observe the “click” of the vacuum.
Tin
Disinfect the tin opening with 70% alcohol.
Brick
Disinfect the brick opening with 70% alcohol and use disinfected scissors to open
the brick.
4. Depending on the type of product continue as followed:
Liquid products
Acidic product:
Streak the acidic product onto OSA plates and incubate the plates at 30°C
aerobically and anaerobically.
Neutral product:
Streak the neutral product on two PCA [aerobic] and two MLA (or Schaedler)
[anaerobic] plates. Incubate the plates at 30°C or 55°C for mesophilic and
thermophilic microorganisms.
Semi solid products
Transfer the product aseptically to TSB aerobically and BHI anaerobically in 1:10
w/v dilution. Incubate the TSB and BHI for 2 days at 30°C/55°C. After incubation
streak the products on PCA [aerobic] and on MLA (or Schaedler) [anaerobic] and
incubate the plates at 30°C or 55°C.
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6.2 Confirmation
For some of the spoiled products an identification using biochemical identification kit of the
microorganisms on the plates is necessary.
For further confirmation and identification, modern identification tools such as 16S rRNA
gene sequencing and MALDI TOF MS are recommended.
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8 Validation
See validation report M01_21VB.
9 References
The above mentioned method is based on the following references but does not
necessarily reflect the exact methodology.
1. L.P.M. Langeveld et al, Duration of the pre-incubation period in the sterility control of
UHT-sterilised milk in Netherlands Milk and Dairy Journal, 33, 1979, 172-180.
2. NEN. 1999 Analysis of the unwanted contamination of long shelf life liquid milk
products. 2nd draft.
3. EC Directive 92/46/EEC; laying down the health rules for the production and placing on
the market of raw milk, heat-treated milk and milk-based products.
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AMENDMENTS AND COMMENTS COMPARED TO EUROPEAN
PHARMACOPOEIA 5.0
172
LISTERIA MONOCYTOGENES DETECTION
173
174
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L. monocytogenes − Detection
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L. monocytogenes − Detection
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5 Equipment
The detection of L. monocytogenes must be performed in a level II laboratory (pathogen
lab).
6 Procedure
6.1 Detection
1. Weigh a suitable amount of sample into ½ Fraser in such a way that a 10% dilution is
obtained (e.g. 25 g sample in 225 ml ½ Fraser).
2. Mix the ½Fraser + sample and incubate at 30 ± 1°C for 24 ± 2 h.
3. Transfer 0.1 ml of the incubated ½ Fraser (regardless of its color) to a tube with 10 ml
full Fraser.
4. Incubate the full Fraser tube at 37°C for 48 ± 2 h.
NOTE:
Several 25 g samples can be pooled. Take care that the heating time to reach 30°C for bottles with larger
volumes is longer than for bottles with a smaller volume. Do not use volumes over 1.5 L.
5. Inoculate a Palcam plate and a second plate of choice (e.g. Rapid L’ mono) with a
loop from the incubated full Fraser. Inoculate in such a way that well isolated colonies
are obtained.
6. Incubate the Palcam and the second plate at 37°C for 48 ± 2 h.
7. Examine the plates for typical growth:
Palcam:
After 24 h, Listeria spp. grow as small or very small greyish green or olive green colonies,
1.5-2 mm in diameter, sometimes with black center, but always with a black halo. After
48 h Listeria spp. appear in the form of green colonies about 1.5-2 mm in diameter, with a
central depression and surrounded by a black halo.
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Rapid L’ mono:
L. monocytogenes: blue colonies without a yellow zone on a red background
L. ivanovii: blue colonies with a yellow zone on a red background
Other Listeria spp: white colonies
6.2 Confirmation
1. Check whether the colonies on the Palcam plate are indeed Listeria. For further
confirmation, take from the Palcam plate 5 colonies which are presumed to be Listeria
spp. Choose 5 colonies from L’ mono plate which are presumed to be L. mono-
cytogenes. When less than 5 suspected colonies are present, confirm all suspected
colonies.
2. Streak the colonies on a TSA or blood agar plate.
Optional: streak from the Palcam plate also on Rapid L’ mono agar.
3. Incubate the plates at 37°C for 18-24 h, or until the growth is satisfactory.
4. Confirm the isolates plates with a biochemical identification test kit e.g. API Listeria.
Follow the manufacturer’s description.
5. In API Listeria the only reaction which differentiates L. monocytogenes from the
harmless species L. innocua is the patented “DIM” in which the expression of
naphthylamidase is determined: While a strong orange-colored reaction for DIM is
obtained for the naphthylamidase positive L. innocua, L. monocytogenes shows a
very weak color change due to the absence of the enzyme (see picture 1).
Picture 1: L. innocua (upper) and L. monocytogenes (bottom) are differed only by DIM reaction using API
Listeria.
NOTE:
By using API Listeria for identification of isolates, the reference strain of L. monocytogenes must always be
tested in parallel for comparison.
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6. For further identification 16S rRNA gene sequencing and MALDI TOF MS are
recommended.
NOTES:
Typical Listeria colonies on TSA are 1-2 mm in diameter, convex, colorless and opaque with an entire edge.
To check whether the isolates are indeed Listeria spp, following tests can be performed:
1. Catalase test (M01_08AA). Listeria are catalase positive
2. KOH test (M01_06AA): Listeria are Gram positive
3. Motility: Inoculate a TSB tube with the isolate and incubate at 25 °C for 8-24 h, until a cloudy
medium is observed. When no 25 °C incubator is available, incubate at room temperature.
Look by microscope for slim, short rods with tumbling motility. Cultures grown above 25°C
may fail to exhibit this motion. Always compare them to a positive control. Cocci, large rods or
rods with rapid swimming motility are not Listeria spp.
4. L. monocytogenes is ß-haemolysis positive. On a sheep blood agar plate, incubated at 37°C
for 24 h this is visible as a narrow clear light zone. Compare to control strains. E.g. L. ivanovii
is also ß-haemolysis positive, showing a wide clear zone after 24 h incubation on sheep blood
agar.
8 Validation
See validation file: M01_22VB.
9 References
The above mentioned method is based on the following references, but does not
necessarily reflect the exact methodologies.
1. International Organisation for Standardisation, “ISO 11290-1, Microbiology of food
and animal feeding stuffs – Horizontal method for the detection and enumeration of
Listeria monocytogenes. Part 1: Detection method”. EN ISO 11290-1: 1996-12 + AMD
1: 2004-10.
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AMENDMENTS AND COMMENTS COMPARED TO ISO NORM
In the DIN EN ISO 11290-1:2005 the enriched culture from not only the second enrichment broth
(full Fraser) but the first enrichment broth (½ Fraser) has to be streaked onto the agar. In the
current method only the enriched culture from the second enrichment broth (full Fraser) will be
streaked onto agar for isolation and identification.
In the DIN EN ISO 11290-1:2005 ALOA agar is recommended as the first selective medium,
combined with the second selective medium of choice.
In the current method Palcam and Rapid L’ mono are recommended as the selective mediums.
However either two of the three media (ALOA, Palcam and Rapid L’ mono) can be applied to the
L. monocytogenes detection.
182
Protocols for L. monocytogenes detection: ISO method and CLF
method
183
184
ACIDIC PASTEURIZED PRODUCT
185
186
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188
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5 Equipment
Usual microbiological equipment
6 Procedure
6.1 Enumeration
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6.2 Confirmation
The identification of suspicious colonies is carried out using appropriate biochemical
identification kits.
For further confirmation and identification, modern identification tools such as 16S rRNA
gene sequencing or MALDI TOF MS are recommended.
8 Validation
This method does not fulfill the requirements for a validated method according to
VA504_06 (CLF procedure) and is therefore not regarded as an accredited method by
CLF.
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9 References
The above mentioned method is based on the following references but does not
necessarily reflect the exact methodology.
1. Baumgart, J.: Mikrobiologische Untersuchung von Lebensmitteln, Behr’s Verlag,
Hamburg, VII.11-3, 1994.
2. Bean, PG.: Microbiological techniques in the examination of canned foods,
Laboratory Practice 25, 303-305, 1976.
3. Sinell, H.-J.: Zur Methodik der mikrobiologischen Untersuchung von Voll- und
Halbkonserven, Fleischw. 54, 1642-1646, 1974.
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AMENDMENTS AND COMMENTS
192
SRC (ISO) DETECTION AND ENUMERATION
193
194
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Optional pasteurization:
The samples can be pasteurized at 80°C for 10 min to eliminate vegetative cells, not only
competitive flora but vegetative SRC cells as well. In addition, the heat shock caused by
pasteurization can activate the germination of some SRC spores. The method refers
hereby to a spore enumeration.
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Tryptone 10.0
Sodium sulphite 0.5
Iron (III) citrate 0.5
Agar 12.0
5 Equipment
Usual microbiological equipment
Anaerobic jars with equipment for generating an anaerobic atmosphere
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6 Procedure
6.1 Enumeration
NOTES:
Optional: Samples for SRC enumeration can also be analyzed without resuscitation.
One must be aware of that not too many samples are treated in one flow, since exposure time to oxygen could
be too long for the last samples, which could decrease quantity of SRC.
Optional pasteurization:
Transfer 10 ml of sample suspension (not resuscitated) into an empty sterile tube. Heat
the samples in a water bath at 80 ± 1°C. As soon as a temperature of 80°C is reached in
samples, pasteurize the samples for exactly 10 min at 80 ± 1°C. After pasteurization the
tubes must be cooled down immediately under the tap water to 20°C. Dry the tubes from
outside and divide the sample over 2 Petri dishes. Pour plates as described above.
NOTES:
Check the temperature by keeping a thermometer in the middle of a tube with 10 ml blank sample or water.
Otherwise the heating time of sample has to be checked with a thermometer and validation data should be
available. After the heating time has been clearly defined, blank sample for temperature control can be
omitted.
Pasteurization can activate germination of spore and germinated spores are oxygen sensitive. Therefore the
cooling time after pasteurization should be as short as possible. Shake the tubes no more than necessary. Do
not treat too many samples in one flow.
3. After the medium has solidified, pour 10 ml of the same medium into the dish as an
over layer to ensure the anaerobic condition.
4. After solidification, incubate the plates in an anaerobic jar at 37 ± 1°C for 24-48 h.
5. Read the results after 24 h as a first control (depending on the degree of black color,
the growth rate and gas production, a first enumeration should be performed). The
final evaluation is carried out after 48 h. Black colonies, possibly surrounded by black
zone, are counted as SRC. White colonies have to be confirmed.
The presence of heavy gas formation (even if no colonies are visible) and/or the
presence of H2S smell are indications for the presence of SRC. Repeat the sample in
a higher dilution in such cases.
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6.2 Confirmation
1. Black colonies:
A confirmation of typical black colonies is not necessary.
2. White colonies:
White colonies have to be checked on anaerobic growth:
Streak typical white colonies on two blood agar plates in parallel and incubate one
plate aerobically and the other anaerobically at 37°C for 24 h. In case no aerobic
growth, but anaerobic growth is shown, the colonies are concluded as SRC and
counted.
For isolates growing anaerobically only, continue as described below:
Suspicious colonies are confirmed with biochemical test kits, e.g. API 20A or API
rapid 32A (see manufacturer’s description).
Molecular biological tools e.g. 16S rRNA gene sequencing and MALDI TOF MS can
be applied for further confirmation.
NOTE:
Fresh cultures of clostridia strains do not contain spores and will be inactivated through pasteurization
process. Therefore they cannot be used as positive control for the method, if an optional pasteurization is
applied.
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8 Validation
See validation report M01_26VB.
9 References
The above mentioned method is based on the following references, but does not
necessarily reflect the exact methodologies.
1. Microbiology of food and animal feeding stuffs – Horizontal method for the
enumeration of sulfite-reducing bacteria growing under anaerobic conditions, ISO
15213: 2003-05-01.
2. Bredius. M. W. J.; de Ree. E. M.: Media for the detection and enumeration of
clostridia in foods. Handbook of Culture Media for Food Microbiology, S. E. L. Corry
et al. (Eds.) Elsevier Science B. V. 2003.
3. Clifford, W. J.; ABE ANELLIS; Ross. E. W.: Evaluation of media, time and
temperature of incubation and method of enumeration of several strains of Clostrium
perfringens spores. Appl. Micro. 27, 784-792 (1974).
4. Eisgruber, H.: Der kulturelle Nachweis Sulphitereduzierender Clostridien in
Lebensmitteln–kritische Anmerkung zur neuen ISO-Norm 15213. Archiv für
Lebensmittelhygiene 52, 72-112 (2001).
5. Eisgruber.H.; Reuter. G.: SCA – ein Selectivnährmedium zum Nachweis mesophiler
Sulphitereduzierender Clostridien in Lebensmitteln, speziell für Fleisch und
Fleischerzeugnisse. Archiv für Lebensmittelhygiene 42, 101-132 (1991).
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AMENDMENTS AND COMMENTS COMPARED TO ISO NORM
Iron Sulphite Agar (ISA) from OXOID replaces the ISO medium as standard
plating medium in the current method
In ISO 15213:2003, a so-called “Iron sulphite agar” is officially recommended. However the agar
named as “ISA” is not the same one described in the current method. From the aspect of
ingredients it corresponds to the commercially available Triptose-sulfite-cycloserine (TSC) base
provided by Merck KGaA (see Table 1).
In the validation test different commercially available agars were tested on the recovery of a
panel of SRC strains in various species. Among these media, the Iron Sulphite Agar (OXOID, CM
0079) has showed the highest efficiency in recovering SRC, while the growth of several SRC
species e.g. Cl. pasteuranium, Cl. sporogenes, Cl. pseudotetanicum, Cl. putrificum, Cl. novyi, Cl.
difficile, Cl. baratii and Cl. acetobutyricum was fully inhibited on the ISO-recommended TSC agar
base (see M01_26VB). The reduced sensitivity of TSC agar base is probably explained by the
higher (di)sulfite concentration (0.1%) (see Table 1). Sulfite-sensitive SRC have been reported
and a higher sulfite concentration can suppress the growth of those SRC strains. As a result, a
maximal sulfite concentration for medium of SRC detection of 0.05% is recommended (see Table
2).
Table 1: Composition of TSC agar base (Merck) (complying with “Iron sulfite agar” in ISO 15213) in g/l
Ingredients Weight
Tryptose 15.0
Agar 12.0
Ingredients Weight
Tryptone 10.0
Agar 12.0
201
Confirmation of white colonies isolated from ISA
It has been shown that some SRC species like Cl. acetobutylicum and Cl. butyricum appeared
white on ISA agar (see M01_26VB). Hence a further confirmation of white colonies isolated from
ISA is obligatory: The isolate will be streaked on two blood plates and incubated at 37°C for 24 h
aerobically and anaerobically in parallel. Only the isolates which grow under anaerobic, but not
aerobic conditions are suspicious for SRC and have to be identified further using biochemical kits
or molecular biological tools.
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CRONOBACTER DETECTION AND MPN ENUMERATION
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NOTE:
The α-glucosidase test is an essential differentiate criterion for identification and differentiation of Cronobacter
spp. from other closely related bacteria.
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Dissolve the components in the water and heat them if necessary. Adjust the pH if
necessary. Distribute the mLST with extra salt in flasks or tubes according to the
analytical needs and sterilize for 15 min at 121˚C.
Dissolve 10 mg of vancomycin in 10 ml distilled water and sterilize by filtration (0.2 µm).
The solution can be kept at 4 ± 1˚C for 14 days. Add 1 ml of sterile vancomycin to 100 ml
mLST to obtain a final vancomycin concentration of 10 μg/ml.
NOTE:
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5 Equipment
Usual microbiological equipment
6 Procedure
ESIA:
Typical colonies are small to medium sized (1-3 mm) green to blue colonies. Non-typical
colonies are slightly transparent and are colored slightly violet.
DFI:
Cronobacter spp. forms easily distinguishable blue-green colonies.
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NOTE 1:
For MPN enumeration, inoculate an appropriate number of flasks/tubes with the same dilution depending on
the desired accuracy of the results. As a general rule, the technique specified requires three flasks or tubes
per dilution.
NOTE 2:
Strains of non-Cronobacter species such as Escherichia vulneris, Pantoea spp. and Citrobacter koseri etc.
appear blue-green on DFI as well.
6.2 Confirmation
Characteristic colonies on chromogenic medium are streaked onto TSA agar and
incubated for 24 h at 37°C. Most Cronobacter spp. strains show yellow pigment on TSA.
However some of them can appear as milky-white.
Isolated colonies are first tested with oxidase, catalase reactions and then confirmed
using biochemical identification test kits e.g. API ID 32E and VITEK 2 compact GN.
For further confirmation molecular biological tools such as 16S rRNA gene sequencing
and MALDI TOF MS can be applied.
8 Validation
See M01_30VB.
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9 References
The above mentioned method is based on the following references, but does not
necessarily reflect the exact methodologies.
1. ISO/TS 22964:2006. Milk and milk products--Detection of Enterobacter sakazakii.
2. Mossel, D.A.A, Struijk, C. “Standing operating procedure: boundary test for and
typification of Enterobacteriaceae in dried microbial dietary formula” EF 1998-250.
3. Nazarowec-White, M., Farber, J.M. (1997). Incidence, survival and growth of
Enterobacter sakazakii in infant formula” Journal of Food Protection, Vol. 60, No. 3.
4. Kandhai M.C. et al. (2004).: Occurrence of Enterobacter sakazakii in food production
environments and households, The Lancet, Vol. 363, p. 39 – 40.
5. Muytjens H.L. et al. (1988): J. Clin. Microbiol. 26,743-746
6. Nazarowec-White M. and Farber J.M. (1997a): Int. J. Food Microbiol. 34,103-113
7. Nazarowec-White M. and Farber J.M. (1997b): Thermal resistance of Enterobacter
sakazakii in reconstituted dried-infant formula. Lett. Appl. Microbiol. 24,9-13.
8. Breeuwer et al. (2003): Desiccation and heat tolerance of Enterobacter sakazakii, J.
Appl. Microbiol. 95,967-973.
9. Iversen et al. (2008): Development of a novel screening method for the isolation of
Cronobacter spp. Appl. Environ. Microbiol. 2550-2553.
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11 Most probable number (MPN) table for dilution in triplicate for 100 g, 10 g
and 1 g. (EN ISO 7218:2007)
211
AMENDMENTS AND COMMENTS COMPARED TO ISO NORM
212
Protocols for Cronobacter detection: ISO method and CLF method
213
214
PSEUDOMONAS DETECTION
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Aeromonas spp.
Aeromonads are facultative anaerobe, oxidase-positive, gram-negative rods. They are
morphologically similar to Pseudomonas but their metabolism is fermentative. Most of the
Aeromonads are mesophil-psychrotroph, with a range of growth temperature of 4-45°C
and a growth optimal at 28°C. Aeromonas hydrophila is described as a new foodborne
pathogen (FDA 1984) which causes enteritis and vomiting.
Pseudomonas spp.
Pseudomonas are gram-negative rods, catalase and oxidase positive and motile by polar
flagella. Their metabolism is strictly aerob without fermentation. Most of the Pseudo-
monads are psychrotroph with a range of growth between 4–41°C.
Pseudomonas aeruginosa
Pseudomonas aeruginosa is known as a pathogen of nosocomial infection which often
proceeds to a sepsis. In cases of hospital food infections P. aeruginosa was found mainly
in milk, human milk, drinking water and sometimes in fruits and vegetables. Further
member of the Pseudomonas group which are attached food-hygienic importance are P.
fluorescens, P. putida and P. stutzeri. These three species are regarded as potential
enterotoxin producer.
Nutrient Broth No. 2 is a nutritious medium suitable for the cultivation of fastidious
pathogens and other microorganisms. This medium is comparable to a meat infusion and
is very rich in nutrients. It gives good growth from small inocula.
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This method is based on ISO 13720:1995-12 (Meat and meat products – Enumeration of
Pseudomonas spp.).
The following modifications have been performed:
pre-enrichmeht in Nutrient No. 2+ CFC-Supplement at 30°C for 24 h
incubation CFC agar at 30°C for 24 h
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5 Equipment
Usual microbiological equipment
UV-lamp (wavelength 360 nm) for detection of fluorescent colonies
6 Procedure
Detection of Pseudomonas in 10 g:
Weigh 10 g sample into 90 ml NB and incubate at 30 ± 1°C for 24 ± 3 h.
Detection of Pseudomonas in 1 g:
Weigh 1 g sample into 9 ml NB and incubate at 30 ± 1°C for 24 ± 3 h.
6.2 Confirmation
For a further confirmation, 16S rRNA gene sequencing or MALDI TOF MS are
recommended.
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8 Validation
See validation report M01_32VB.
9 References
The above mentioned method is based on the following references, but does not
necessarily reflect the exact methodologies.
1. Bergey’s Manual of Systematic Bacteriology, Volume 1, 1984
2. Oxoid, The Manual, 8th Edition 1998.
3. ISO 13720, First Edition 1995-12-15, Meat and meat products – Enumeration of
Pseudomonas spp.
4. Nutricia Corporate methods , 1988-12-28, Isolation of Pseudomonadaceae.
5. Nutricia Corporate methods , 1989-03-29, Detection of Pseudomonas aeruginosa.
6. Heeschen, W. 2003/12, Handbuch der Lebensmittelhygiene, Kap.2.3.2.11, Behr’s
Verlag Hamburg.
7. Europäisches Arzneibuch, 1997.
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AMENDMENTS AND COMMENTS COMPARED TO ISO NORM
The standard norm ISO 13720 “Meat and meat products – Enumeration of Pseudomonas spp.” is
an enumeration method. The method M01_32ME is a detection method.
Both methods include an enrichment step: in ISO 13720 the sample is resuscitated in BPW at 37
°C directly followed by spreading. In the present method the enrichment is carried out in nutrient
broth No.2 supplemented with CFC at 30°C for 24 h. The validation data (see M01_32VB1)
showed that the nutrient broth No.2 with selective supplement CFC followed by streaking on CFC
agar enabled a successful detection of Pseudomonas spp. and other gram negative, oxidase
positive rods with a high sensitivity of 1 CFU/g milk powder against a high number of competitive
flora.
In the ISO 13270 the incubation condition of inoculated CFC agar is 25°C 48 h. However it has
been found in the validation (see M01_32VB1) that the target microorganisms showed a better
growth, pigmentation and fluorescence at 30°C than at a higher (37°C) or a lower (25°C)
incubation temperature. Therefore the incubation temperature of CFC agar is adapted to 30°C.
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BIFIDOBACTERIA ENUMERATION
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Microscopic appearance:
Rods of very varied shapes, usually curved and clubbed, often
branched, arranged singly, in pairs, in V arrangements, in chains, in
palisades of parallel cells, or in rosettes, occasionally exhibit swollen
coccoid forms.
ATCC American Type Culture Collection
CFU Colony forming units
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Transgalactosylated
oligosaccharides propionate TOS 3 months 4-10°C2
agar base
The ¼ strength ringer solution is commercially available in form of tablets from suppliers
such as Merck, Thermor Scientific, Sigma Aldrich etc.
NOTE:
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NOTE:
TOS medium is heat sensitive and should be autoclaved in small portions (95 ml or 190 ml of dissolved
medium).
4.2.3 TOS-MUP-agar
Aseptically add 5 ml MUP solution (1 mg/ml) to 95 ml of liquefied medium at 48°C +/1°C
(190 ml base medium is supplemented with 10 ml supplement solution).
Avoid air bubbles during addition of supplement, which can cause oxidation of the
medium.
The complete TOS-MUP medium contains a final Lithium-Mupirocin concentration of 50
mg/L.
After Lithium-Mupirocin supplementation the medium is used immediately.
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5 Equipment
Usual microbiological equipment
Anaerobic incubation equipment, e.g. an incubation jar
6 Procedure
6.1 Enumeration
NOTE:
1. Shake (preferably 10 times, with a movement of about 300 mm, for approximately 7 s
the primary dilution (10-1 dilution) to obtain homogeneity.
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2. Pipette 1 ml of the primary dilution (initial suspension) into a test tube containing 9 ml
of Ringer’s solution.
3. Thoroughly mix the dilution by using a vortex mixer. For further dilution steps proceed
in the same manner.
NOTE:
6.2 Confirmation
Identify bifidobacterial colonies by their whitish color. Select typical colonies from the
plates used for counting and examine microscopically.
Optionally, a fructose-6-phosphate phosphoketolase (F6PPK)-assay can be performed to
confirm the results.
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8 Validation
See validation report M01_37VB.
9 References
The above mentioned method is based on the following references, but does not
necessarily reflect the exact methodologies.
1. International Organization for Standardization “ISO 2998: Milk products –
Enumeration of presumptive bifidobacteria – Colony count technique at 37°C” 2010-
02.
2. M01_01AA “Calculations and expression of results” CLF method, Microbiology
Division.
3. International Organization for Standardization “ISO 8261: Milk and milk products
General guidance for the preparation of test samples, initial suspensions and decimal
dilutions for microbiological examination” 2001
4. International Organization for Standardization “ISO 7218: Microbiology of food and
animal feeding stuffs - General requirements and guidance for microbiological
examinations” 2007.
5. Danone Research Center “Document MTH-06-202, Version 4: Enumeration of
presumptive bifidobacterium in dairy products – Colony count technique on TOS-MUP
media (ISO 29981 – IDF 220)” 2008.
6. Danone Research Center „Analytical Report & Expertise Report, AS 426-08:
Comparison of different diluents for bifidobacteria count” 2008.
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AMENDMENTS AND COMMENTS COMPARED TO ISO NORM
232
E. COLI DETECTION AND MPN ENUMERATION
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Modifications
Following modification has been performed:
Isolation and confirmation of culture in EC broth using commercially available
biochemical identification kits e.g. API 32E and/or modern identification tools like
16S rRNA gene sequencing and MALDI TOF MS.
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5 Equipment
Usual microbiological equipment
6 Procedure
6.1 Detection
1. Prepare a resuscitated sample, a suitable dilution series dependent on the presumed
contamination level of the sample (see method M01_01ME). Pipette the appropriate
volume of (diluted) sample of e.g. 1 ml to 9 ml of single-strength LSB or 10 ml to 10
ml double-strength LSB.
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2. Incubate the single- or double-strength LSB for 42-48 h at 37°C. The Durham tube
must stick to the bottom of the tube.
3. After 48 h incubation period, if opacity, cloudiness or any visible gas is observed,
inoculate a tube of EC broth with a sampling loop and incubate at 44°C for 48 h.
4. After incubation, if opacity, cloudiness or any visible gas is observed, streak the EC
broth onto a TSA plate and incubate at 37°C for 24 h.
NOTES:
For MPN enumeration, inoculate an appropriate number of tubes with the same dilution depending on the
desired accuracy of the results e.g.:
Take three tubes of double-strength LSB and transfer to each tube 10 ml of initial suspension. These test
portions correspond to 1 g sample.
Take three tubes of single-strength LSB and transfer to each tube 1 ml of initial suspension. These test
portions correspond to 0.1 g sample.
Take three tubes of single-strength LSB and transfer to each tube a further decimal dilution of 1 initial
suspension. These test portions correspond to 0.01 g sample.
Incubate the tubes as described in 6.1 and interpret the results according to the MPN table.
6.2 Confirmation
Colonies on TSA are confirmed with biochemical kits e.g. API 32E. Particularly examine
the reaction of indole production. A red colour indicates the presence of indole which is
typical for presumptive E. coli.
For a further identification, 16S rRNA gene sequencing and/or MALDI TOF MS are
recommended.
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8 Validation
See validation report M01_55VB.
9 References
The above mentioned method is based on the following references, but does not
necessarily reflect the exact methodologies.
1. International Organisation for Standardisation, „Horizontal method for the detection
and enumeration of presumptive Escherichia coli – Most probable number technique
“. ISO 7251:2005.
2. International Organisation for Standardisation, „Microbiology of food and animal
feeding stuffs – General requirements and guidance for microbiological examinations
“. ISO 7218:2007.
3. International Organisation for Standardisation, „Horizontal method for the detection of
Escherichia coli O157”. ISO 16654:2001.
4. M01_09ME “E. coli - Detection“. CLF method, Microbiology Division.
5. M01_01ME “Sample preparation and dilution“. CLF method, Microbiology Division.
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11 Most probable number (MPN) table for dilution in triplicate for 1 g, 0.1 g and
0.01 g. (EN ISO 7218:2007)
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AMENDMENTS AND COMMENTS COMPARED TO ISO NORM
241
Protocols for E. coli detection: ISO method and CLF method
242
243
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