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Acs Jpca 0c09116
Acs Jpca 0c09116
org/JPCA Article
■ INTRODUCTION
Polyphenols (i.e., organic molecules presenting multiple phenol
bond dissociation enthalpies (BDEs) are important descriptors
that represent the energy necessary for the O−H bonds to be
units in their chemical structures) are widely known for having cleaved.
considerable antioxidant activity.1 These compounds are often Another crucial mechanism related to antioxidant activity is
found in most parts (including leaf tissue, bark layers, flowers, single electron transfer (SET). In SET, one electron is transferred
and fruits) of a multitude of natural products, being classified as directly from the antioxidant molecule to the free radical, such as
flavonols, chalcones, flavones, lignans, etc. according to dif-
ferences in their chemical structures. Due to the fact that these ArOH + R• → ArOH+ + R− → ArO• + RH (2)
entities are highly desired for providing several health-related
features (such as anti-inflammatory, antiviral, and antitumor
actions2−5), there is an ongoing focus in chemical, food, and
pharmaceutical industries on finding sources of antioxidants.
From a general perspective, most of the benefits provided
by polyphenols arise from their capabilities to neutralize free
radicals.6 Moreover, since the seminal paper by Wright et al.7
(in combination with the study presented by Leopoldini et al.8)
it is well established that the antioxidant potential of a given
polyphenol can be successfully predicted through the examina-
tion of some specific mechanisms, by using results gathered from
electronic structure computations. One important path is the Figure 1. Illustration of the chemical structure for gallic acid (GA)
hydrogen atom transfer (HAT) mechanism, in which a O−H along with atom numbering.
bond is homoliticaly broken and a H atom is transferred to a
radical. The HAT mechanism can be written as
Received: October 7, 2020
ArOH + R• → ArO• + RH (1) Revised: December 14, 2020
where ArOH is the neutral molecule of the antioxidant, R• is Published: January 5, 2021
the free radical, ArO• is the molecule of the antioxidant after
suffering the abstraction of one of its H atoms, and RH is the
stabilized (former) free radical. In terms of HAT, the O−H
Figure 2. Example of mechanisms relevant to the present work for protonated (GAOH) and deprotonated (GAOH−) GA. On the left, HAT for the
cleavage of the O−H bond at the 5-ArOH position for the protonated GA and its corresponding SET. On the right side, HAT for the cleavage of the
O−H bond at the 5-ArOH position for the deprotonated GA and its corresponding SET. Species on the left side were investigated through
computations in the gas-phase and considering water as solvent (IEF-PCM) environment; species on the right were investigated solely through the
consideration of (water) solvation.
The SET mechanism is governed by the ionization potential Table 1. Previous Experimental and Computational Results
(IP). In this sense, the lower the IP, the easier is the electron of O−H BDEs and IP (Both Given in kcal/mol) for GA
abstraction and, thus, more likely for a given polyphenol to experimental BDEs
present antioxidant activity. Other less studied mechanisms
ref 34a 81.0
(such as the sequential proton loss electron-transfer, SPLET,
ref 35b 83.1
mechanism9,10) have also been connected to the antioxidant computational results
activity of a variety of compounds, however, in terms of poly-
protonated GA
phenols, the HAT and SET mechanisms are suggested as being
BDEs IP
the dominant paths.11,12 In particular, the computationally 4-ArO• 5-ArO• 6-ArO•
determined BDEs have been shown to be strongly correlated to ref 36c 82.2 141.1
experimentally measured antioxidant activity.13−15 ref 37d 78 188
In the very recent past, theoretical investigations focusing on ref 37e 77 143
the determination of the BDEs and IPs for polyphenolic com- ref 38f 84.6 77.2 77.9 189.3
pounds have been heavily accomplished.16−22 As polyphenols ref 38g 81.5 76.0 78.6 118.8
are (in general) mid- to large-sized molecules and examining ref 38h 83.4 76.7 78.2 161.8
their electronic structure through the consideration of solvent ref 39i 87.2 82.7 87.00 127.20
(mainly water) environments is required, almost the totality of ref 39j 81.5 77.0 81.3 112.6
these computational studies have employed density functional ref 40k 92.0 182.6
theory (DFT) with a wide variety of exchange-correlation func- ref 40l 90.9 138.4
tionals, the Becke, Lee, Yang, and Parr (B3LYP)23,24 deprotonated GA
BDEs IP
undoubtedly being the most prevalent. To the best of our
4-ArO• 5-ArO• 6-ArO•
knowledge, only a single benchmark investigation regarding the
ref 38f 76.2 66.4 68.8 62.38
evaluation of BDEs and IPs for a polyphenolic molecule was
ref 38g 78.2 71.9 74.8 88.0
carried out recently by Adamo and co-workers for quercetin.25 ref 38h 77.2 69.1 71.7 87.7
After benchmarking twenty-one DFT exchange-correlation
a
functionals against each other, the authors suggested the Determined in acetonitrile/chlorobenzene mixture. bDetermined in
LC-ωPBE,26 M05-2X,27 and M06-2X28 functionals as the most methyl linoleate. c(RO)B3LYP/6-311+G(2d,2p)//AM1/AM1 in
ethanol. dB3LYP/6-311++G(df,p) in the gas-phase. eB3LYP/6-311+
suitable for probing those antioxidant-related properties; no
+G(df,p) in water. fB3LYP/6-311++G(d,p) in the gas-phase. gB3LYP/
benchmarks involving the application of methods beyond DFT 6-311++G(d,p) in water. hB3LYP/6-311++G(d,p) in benzene. iM05-
(specially those based on high-level of theory) are available 2X/6-311++G(d,p) in water (SMD). jB3LYP-D2/6-311++G(d,p)
to date. Therefore, we decided to carry out the present work to in water (SMD). kB3LYP/6-31G(d,p) in the gas-phase. lB3LYP/
fill this gap. 6-31G(d,p) in water.
199 https://dx.doi.org/10.1021/acs.jpca.0c09116
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The Journal of Physical Chemistry A pubs.acs.org/JPCA Article
Table 2. BDEs (in kcal/mol) for Different OH Groups of Protonated GA As Determined in the Gas-Phasea
radical 6-311++G(df,p) cc-pVDZ aug-cc-pVDZ cc-pVTZ aug-cc-pVTZ
B3LYP
4-ArO• 84.9 82.4 (84.2) 84.4 (86.3) 84.8 85.2
5-ArO• 77.6 73.7 (75.2) 76.7 (78.2) 76.7 77.5
6-ArO• 78.3 75.14 (76.8) 77.7 (79.3) 78.0 78.6
LC-ωPBE
4-ArO• 85.6 83.2 84.8 85.5 85.8
5-ArO• 78.2 74.4 76.8 77.2 77.9
6-ArO• 78.9 76.1 77.8 78.6 79.0
M06-2X
4-ArO• 90.4 88.0 89.5 90.4 90.8
5-ArO• 83.3 79.8 81.9 82.7 83.2
6-ArO• 84.1 81.3 83.0 83.9 84.3
U-MP2
4-ArO• 109.0 113.1 116.9 118.0
5-ArO• 98.1 102.7 105.9 107.4
6-ArO• 101.3 105.1 108.8 109.9
RO-MP2
4-ArO• 81.3 83.9 86.9 87.6
5-ArO• 72.2 76.1 78.5 79.7
6-ArO• 73.9 77.0 79.8 80.5
U-CCSD
4-ArO• 82.8 85.7 88.5 89.2
5-ArO• 75.2 78.7 81.0 82.1
6-ArO• 76.6 79.5 82.2 82.8
RO-CCSD
4-ArO• 83.3 86.1 89.0 89.6
5-ArO• 75.8 79.3 81.6 82.6
6-ArO• 77.1 79.9 82.6 83.2
RO-CCSD(T)
4-ArO• 82.2 85.3 88.2 88.9
5-ArO• 74.4 78.2 80.5 81.6
6-ArO• 75.7 78.8 81.5 82.2
a
The values in parentheses were determined with the RO-B3LYP approach. Atom numbering is provided in Figure 1.
In this work, we performed a benchmark investigation on the (RO-B3LYP, RO-MP2, RO-CCSD, and RO-CCSD(T)) were
BDEs and IP for gallic acid (GA), see Figure 1 for its chemical employed. LC-ωPBE26 and M06-2X28 functionals were chosen
structure. GA is a compound commonly used as a standard in based on the results by Adamo and co-workers,25 while
experimental tests of antioxidant activity29−31 and, thus, it has B3LYP23,24 was employed to facilitate future comparisons.
been extensively studied both experimentally and computation- The spin contamination for the DFT methods was found to be
ally.32−40 In the present work, the properties of interest were quite modest, e.g., an S2 value of 0.77 for the doublet 5-ArO•
determined in the gas-phase and in water through the use of radical derived from protonated GA at the B3LYP/aug-cc-pVTZ
DFT, second-order Møller−Plesset perturbation theory (MP2), level in the gas-phase, while the analogous value was very large
coupled-cluster with single and double excitations (CCSD), and for UHF, S2 = 1.25 (which of course is the basis for the U-MP2
coupled-cluster with single and double excitations as well as calculations). The 6-311++G(df,p),44−47 cc-pVDZ, aug-cc-pVDZ,
perturbative inclusion of triples (CCSD(T)) with the 6-311+ cc-pVTZ, and aug-cc-pVTZ48−50 basis sets were used throughout.
+G(df,p), cc-pVDZ, aug-cc-pVDZ, cc-pVTZ, and aug-cc-pVTZ All the optimizations were accomplished using default convergence
basis sets.41−50 After comparing the BDEs and IP computed criteria and without imposing any symmetry constraints. The initial
using all the different approaches with each other, as well as with structure for geometry optimizations of GA was based on the most
previous experimental and theoretical results available in the stable conformation found by Rajan and Muraleedharan37 at the
literature, a general conclusion regarding the usage of the methods B3LYP/6-311++G(df,p) level of theory in water. Vibrational
for probing antioxidant-related properties of polyphenols was frequencies were computed for all the optimized structures to
drawn. confirm the conformations as minima, to evaluate the zero-point
■ COMPUTATIONAL METHODS
The electronic structure computations for GA were performed
energy (ZPE) corrections, and to determine enthalpies (at 298 K).
The computations were performed in the gas-phase and in water.
Through the investigation of the antioxidant activity of propyl
using DFT (with the B3LYP,23,24 LC-ωPBE,26 and M06-2X28 gallate, Medina et al.51 concluded that the addition of explicit
exchange-correlation functionals), MP2, CCSD, and CCSD- solvent molecules presents no advantages over continuum solvation
(T);41−43 for the open-shell species, the corresponding unrestricted models and, thus, we utilized the integral equation formalism
formalisms (i.e., U-B3LYP, U-LC-ωPBE, U-M06-2X, U-MP2, polarizable continuuum model (IEF-PCM)52−54 for taking solvation
U-CCSD, and U-CCSD(T)) as well as restricted open-shell into account. The Gaussian 09 software suite55 was used for
200 https://dx.doi.org/10.1021/acs.jpca.0c09116
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202 https://dx.doi.org/10.1021/acs.jpca.0c09116
J. Phys. Chem. A 2021, 125, 198−208
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Table 4. continued
radical 6-311++G(df,p) cc-pVDZ aug-cc-pVDZ cc-pVTZ aug-cc-pVTZ
RO-MP2
4-ArO• 76.6 79.1 82.3 82.7
5-ArO• 68.4 72.4 74.4 75.4
6-ArO• 72.0 75.2 77.9 78.6
U-CCSD
4-ArO• 78.3 80.5 83.3 83.7
5-ArO• 71.1 74.5 76.7 77.6
6-ArO• 74.4 77.2 80.0 80.4
U-CCSD(T)
4-ArO• 79.0 81.5 84.7 ---
5-ArO• 71.5 75.1 77.6 78.6
6-ArO• 74.8 78.0 80.7 ---
a
Atom numbering is provided in Figure 1.
Table 5. IPs (in kcal/mol) Determined for GA (Gas-Phase and Water) and Deprotonated GA (Water)
6-311++G(df,p) cc-pVDZ aug-cc-pVDZ cc-pVTZ aug-cc-pVTZ
protonated (gas)
B3LYP 188.6 179.7 187.2 184.9 187.4
LC-ωPBE 191.6 183.7 189.7 187.9 189.9
M06-2X 193.6 185.9 191.3 190.9 192.5
U-MP2 190.6 201.6 201.1 205.1
RO-MP2 181.4 191.9 190.9 194.6
RO−CCSD 179.4 188.5 187.4 190.7
RO−CCSD(T) 178.9 189.1 187.9 191.6
protonated (water)
B3LYP 144.1 129.1 142.8 140.6 142.8
LC-ωPBE 147.0 139.5 145.2 143.5 145.3
M06-2X 149.2 141.9 146.7 146.6 148.1
U-MP2 156.9 167.1 167.3 171.3
RO-MP2 142.9 152.1 151.9 155.5
U-CCSD 141.3 149.5 149.3 152.5
U-CCSD(T) 141.0 150.1 149.9 153.6
deprotonated (water)
B3LYP 130.0 119.1 128.5 125.1 128.5
LC-ωPBE 137.0 127.3 135.0 132.3 135.0
M06-2X 139.0 129.3 136.4 135.1 137.4
U-MP2 132.5 146.1 144.0 149.2
RO-MP2 124.9 137.5 135.2 140.0
U-CCSD 122.7 133.8 131.5 134.3
U-CCSD(T) 122.6 135.0 132.7 135.2
RO-MP2 provided results that are in good agreement with those Although the BDEs in the gas-phase can provide useful
computed using coupled-cluster theory, presenting no signal of insights, determining such properties in water is substantially
over binding. Hence, RO-MP2 appears to be a good choice of more relevant for biological antioxidant activity.63 Therefore,
wave function method in this case regarding the balance between such results are available in Table 3. It is possible to see that the
computational cost and accuracy for determining BDEs. Results relative order of the BDEs in water remains the same as those
calculated using U-CCSD and RO-CCSD are in excellent seen in the results computed in the gas-phase: 5-ArOH < 6-ArOH <
agreement and the inclusion of perturbative triples contributes 4-ArOH. On the other hand, as observed in the previous works for
just under 1 kcal/mol. As expected, there is a not insignificant GA,37,38,40 the BDEs experience a slight decrease when the polar
basis set dependence observed for these wave function-based solvent environment is taken into account. Once again, B3LYP and
methods, e.g., the CCSD(T) BDE (4-ArOH) increased by LC-ωPBE functionals yielded results that are quite close to each
4.6 kcal/mol between aug-cc-pVDZ and aug-cc-pVTZ whereas other (using a given basis set) while the M06-2X functional provided
the analogous change for M06-2X was just 1.3 kcal/mol. Overall, results that are in quite good agreement to those determined at the
the M06-2X functional provided the best agreement for the CCSD(T)/aug-cc-pVTZ//M06-2X/aug-cc-pVTZ level of theory,
BDEs when compared to the corresponding CCSD(T)/aug-cc- suggesting that the Minnesota exchange-correlation functional as
pVTZ//M06-2X/aug-cc-pVTZ results. being considerably accurate for probing the BDEs in the case of a
In Figure 3, the relative deviations for the 5-ArOH BDEs are neutral polyphenol. The relative deviations for the 5-ArOH BDEs
presented. It is possible to notice that even the values obtained determined in water for the protonated GA can be seen in Figure 4.
using the M06-2X functional with the small cc-pVDZ basis set In Table 4, we show the BDEs computed for different OH
(79.8 kcal/mol for the 5-ArOH, 81.3 kcal/mol for the 6-ArOH, groups of the deprotonated GA. Similarly to what was observed
and 88.0 kcal/mol for the 4-ArOH) are in better agreement previously by Š korňa et al.38 using the B3LYP/6-311++G(d,p)
in regards to the results determined at the CCSD(T)/aug-cc- approach in the gas-phase, water, and benzene, the present
pVTZ//M06-2X/aug-cc-pVTZ (81.6 kcal/mol for the 5-ArOH, results suggest the BDEs for deprotonated GA as being lower
82.2 kcal/mol for the 6-ArOH, and 88.9 kcal/mol for the than their corresponding counterparts obtained for the protonated
4-ArOH) than those computed using the B3LYP and the version of the GA at all levels of theory. For example, the BDE of the
LC-ωPBE functionals with the larger aug-cc-pVTZ basis set, 5-ArOH was determined as 78.6 kcal/mol at the CCSD(T)/aug-
for example. These results were found to be 77.5, 78.6, and cc-pVTZ//M06-2X/aug-cc-pVTZ level of theory in water against
85.2 kcal/mol for the 5-ArOH, 6-ArOH, and 4-ArOH, respec- the 82.4 kcal/mol for protonated GA (see Table 3) at the same
tively, at the B3LYP/aug-cc-pVTZ in the gas-phase, as well as approach. Again, the M06-2X functional provided the best results in
77.9, 79.0, and 85.8 kcal/mol for the 5-ArOH, 6-ArOH, and comparison to those calculated at the CCSD(T)/aug-cc-pVTZ
4-ArOH, respectively, at the LC-ωPBE/aug-cc-pVTZ in the level of theory. However, due to the anionic nature of the
gas-phase. In addition, in the case of the Minnesota functional, deprotonated GA, diffuse functions are necessary for accurately
all of the Dunning basis sets provided results that are closer describing the system and, thus, the use of the aug-cc-pVXZ
to the corresponding values obtained at the CCSD(T)/aug-cc- basis set (instead of the cc-pVXZ, with X = D and T) is advised.
pVTZ//M06-2X/aug-cc-pVTZ level than those determined The relative deviations for the 5-ArOH BDEs determined in
with the 6-311++G(df,p) basis set. water for the deprotonated GA can be seen in Figure 5.
204 https://dx.doi.org/10.1021/acs.jpca.0c09116
J. Phys. Chem. A 2021, 125, 198−208
The Journal of Physical Chemistry A pubs.acs.org/JPCA Article
■ CONCLUSIONS
In summary, a benchmark investigation was carried out on
the O−H bond dissociation enthalpies (BDEs) and ionization
potential (IP) for the antioxidant polyphenol gallic acid. These
properties were probed in both the gas-phase and water using
DFT, MP2, and coupled cluster approaches. Five basis sets
ranging from cc-pVDZ to aug-cc-pVTZ were employed. In terms
of the DFT functionals that were evaluated, M06-2X provided the
best agreement for the BDEs (for all the chemical species and
solvent environment) and the IP for protonated GA as compared
to the corresponding results obtained using the CCSD(T)
method with the aug-cc-pVTZ basis set with differences less than
2 kcal/mol for all the gas phase values and within 6 kcal/mol for
the IP in water. For all of these latter cases the MP2 method, when
based on ROHF orbitals, was only slightly less accurate than
M06-2X for the gas phase values, more accurate for the IP in
water, and in all cases better than the other two functionals
employed. The UHF-MP2 method yielded much poorer results
throughout. The LC-ωPBE functional yielded nearly identical
results for the IP of deprotonated GA in water compared to
CCSD(T)/aug-cc-pVTZ, which were about 2 kcal/mol larger
than the value obtained with M06-2X. The commonly used
B3LYP functional yielded the worst agreement with CCSD(T)
in all cases among the three functionals investigated. Given that
the O−H BDEs and the IP represent important descriptors for
probing two essential mechanisms related to the antioxidant
potential of mid- and large-sized polyphenols (the hydrogen
atom transfer, HAT, mechanism and the single-electron transfer,
SET, mechanism) it is hoped that these results will be of clear
interest for computational chemists working in this area.
■ ASSOCIATED CONTENT
* Supporting Information
sı
The Supporting Information is available free of charge at
https://pubs.acs.org/doi/10.1021/acs.jpca.0c09116.
Cartesian coordinates as discussed in the text (PDF)
■ AUTHOR INFORMATION
Corresponding Authors
Gabriel L. C. de Souza − Departamento de Química,
Universidade Federal de Mato Grosso, Cuiabá, Mato Grosso
Figure 8. Relative deviations (in kcal/mol) to the IP for deprotonated 78060-900, Brazil; Department of Chemistry, Washington
GA as determined at the CCSD(T)/aug-cc-pVTZ//M06-2X/aug-cc- State University, Pullman, Washington 99164, United States;
pVTZ level in water.
orcid.org/0000-0002-2192-7345; Phone: +55-65-3615-
8000; Email: gabriellcs@pq.cnpq.br; Fax: +55-65-3628-
nearly identical to some of the current calculations. However,
1219
unlike their protonated results (their Scheme 1), the values
Kirk A. Peterson − Department of Chemistry, Washington State
they give for the BDEs and proton dissociation enthalpies of
University, Pullman, Washington 99164, United States;
the deprotonated GA do not yield consistent values for the IP
orcid.org/0000-0003-4901-3235; Phone: +1-509-335-
using their Scheme 2 thermodynamic cycle. Hence it is proposed
7867; Email: kipeters@wsu.chem.edu
that their deprotonated GA IP values are perhaps slightly
in error. Complete contact information is available at:
Figures 6−8 present the relative deviations for the IP https://pubs.acs.org/10.1021/acs.jpca.0c09116
determined for GA considering the gas-phase, protonated in
water, and deprotonated in water, respectively. As seen previously Notes
for the BDEs, it is possible to notice that the IP results obtained The authors declare no competing financial interest.
206 https://dx.doi.org/10.1021/acs.jpca.0c09116
J. Phys. Chem. A 2021, 125, 198−208
The Journal of Physical Chemistry A
■
pubs.acs.org/JPCA Article
ACKNOWLEDGMENTS Hydroxyl, and Carboxylic Acid Groups of Phenolic Acids. Sci. Rep.
2020, 10, 2611-1−2611-9.
The Brazilian agency CNPq funded this work (Grants: 306433/ (17) Yusuff, O. K.; Abdul Raheem, M. A. O.; Mukadam, A. A.;
2019-2 and 204748/2018-6). Sulaimon, R. O. Kinetics and Mechanism of the Antioxidant Activities
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