Professional Documents
Culture Documents
2020 Determination
2020 Determination
Hungary
7 Northern Virginia Community Additional supporting information may be found online in the Supporting Infor-
College, Alxandria, VA, USA mation section at the end of the article.
8 Faculty of Agricultural and Food
Sciences and Environmental
Management, University of
Debrecen, Hungary
9 Unidad de Investigación para la
Generación y Síntesis de
Evidencias en Salud,
Universidad San Ignacio de
Loyola, Lima, Peru
10 Centro de Investigación y
Transferencia de Tecnología -
CIITT, Universidad Católica de
Cuenca, Azogues, Ecuador
11 Translational Glycomics Group,
Research Institute of
Biomolecular and Chemical
Engineering, University of
Pannonia, Veszprém, Hungary
[1,11,12], being produced by peptide N-glycanase (PNGase), can database, Glycostore (https://glycostore.org) lists mainly
in a process, which involves an acidic PNGase (aPNGase) [4]. HPLC-based retention values, instead of CE-based ones. As
Free, non-conjugated N-glycans (PCT-FNGs) found in there are no available plant-related structures to serve as stan-
various plants have been reported [1–7], however, their bio- dards, we compared Glucose unit (GU) values obtained for
logical function has not yet been clarified. To the best of our healthy and nutrient-deficient plant samples with GU values
knowledge, these compounds are involved in salt stress tol- listed in glycostore.org. We found that several peaks from
erance for Arabidopsis [8]. Fanata et al. [9] reported that PCT- the CE profile of healthy crops are different from all peaks
FNGs play an essential role in several plant species. Hence, present in the profiles of nutrient deficient crops. Assuming
in mutant rice, lack of PCT-FNGs caused reduced seedling that this finding is related to nutrient deficiency, we hypoth-
development; such plants died prior to reaching their repro- esized that possible glycan structures with peak differences
ductive stage. between healthy and nutrient deficient plants, are associated
The most widespread methods for glycan analysis are liq- with stress caused by nutrient (nitrogen) deficiency. Next, we
uid separation techniques (CE, and LC-MS) and NMR [13]. attempted to determine whether there is a universal norm
Carbohydrate microarrays, having their solid surface modi- pertaining N-glycan functions, which can be related to nutri-
fied with several different glycan structures, arranged in a ent deficiency and/or diseases caused stress. To answer this
well-defined pattern, enable versatile and sensitive analysis question, we scrutinized the literature of physiological pro-
of altered glycosylation in complex biological samples [14]. cesses, for samples originating from either plants or eukary-
Tsujimori and co-workers [15] used HPLC to assess the otes, in general.
presence of PCT-FNGs and several exoglycosidases in the As the initial step of our experimental work, we per-
xylem sap of tomato plants. According to their study, PCT- formed the quantitative determination of nitrogen by Kjel-
FNG derivatives are secreted and decomposed in the apoplast dahl digestion. We found average total nitrogen content of
fluid or xylem sap. Reily et al. [16] documented in human 2.19 m/m% in nutrient deficient tomato samples and 4.30
studies that glycans play multiple crucial roles in cellular re- m/m% in healthy tomato samples, respectively. A statistically
sponse to environmental stimuli and in cellular growth and significant difference between the mean N content of healthy
differentiation, as well. Similar response can be observed in and nutrient deficient plants: mean difference (healthy ver-
plants, where specific changes in glycan composition can be sus ND) was 2.1% and the p-value of the two-sided t-test was
linked directly to nutrient deficiency, which represents a kind 0.0017.
of abiotic stress. In response, signal transduction pathways,
so called stress hormones (like ethylene, salicylic acid, jas-
monic acid, and abscisic acid) mediate the effect of the stress.
2 Materials and methods
In nutrient deficiency, the concentration level of such hor-
mones rises. Kumar et al. [17] found two-fold higher sali-
Multispectral analysis was performed in quadruplicate for
cylic acid concentrations in cucumber seedlings, when no
three tomato specimens per each group (healthy and nutri-
nitrate supply was made available. Dubois and colleagues
ent deficient plants) to determine the chlorophyll content.
[18] reported that nutrient deficiency induced ethylene syn-
Experiments were conducted on March 4, 2020, under natu-
thesis. Stress hormones trigger several mechanisms, such
ral sunlight, at Campus Sur of Universidad Politécnica Sale-
as the induction of glycosyltransferases. Langlois-Meurinne
siana, in Quito, Ecuador. Nutrient deficient plants were se-
and coworkers [19] found that members of the D glycosyl-
lected according to their symptoms visible to the naked eye.
transferases group had distinct induction profiles subsequent
The following warning signs were considered: (a) pale green
to infection with Pseudomonas syringae pv in tomato or af-
or yellowish spots on the upper leaf surface; (b) blackened
ter treatment with salicylic acid or methyl jasmonate in Ara-
(necrotic) areas on the stems, (c) twisted and/or cupped up-
bidopsis. This finding indicates the potential role of glycosyl-
per foliage, and (d) expanded bronze areas.
transferases in stress or defense response.
Next, xylem sap was extracted from the same plant spec-
To establish whether quantified PCT-FNGs can serve as
imens, on the same day.
markers of plant health status, we examined the relationship
between nutrient (nitrogen) deficiency and the types of com-
plex oligosaccharides. For evaluating plant health chlorophyll
content was determined via multispectral imaging. We quali- 2.1 Chemicals, reagents
fied possible PCT-FNGs in tomato xylem sap by capillary elec-
trophoresis with laser induced fluorescence detection (CE- Glacial acetic acid, sodium-cyanoborohydride (1 M in THF),
LIF). This is a sustainable technique, given that CE is suit- water (HPLC grade), and acetonitrile (99.8%) were purchased
able for miniaturization and has a low mass/power/volume from Sigma-Aldrich (St. Louis, MO, U.S.A). Fast Glycan La-
requirement relative to other liquid phase separation tech- beling and Analysis Kit was obtained from SCIEX (Brea,
niques [20]. Due to scarcity of literature data, it was chal- CA, U.S.A.) with a set of reagents included in the kit,
lenging to conduct this study. It must be noted, that struc- namely, 8-aminopyrene-1,3,6-trisulfonic acid (APTS) tagging
tures found in databases originated from mammalian mon- dye, the maltooligosaccharide ladder, maltose, and magnetic
oclonal antibodies, rather than from plants. Even the gly- beads.
a)
Bonferroni-adjustment was applied.
log-transformed peak areas for each crop separately. Data Table 2. Pearson correlation between chlorophyll content and
peak areas (statistically significant results only, ordered
was pre-processed to identify the pair of peaks present for
by the extent of correlation)
both plant conditions (healthy and nutrient deficient). We
considered that one peak corresponds to a certain GU value No of pair Correlation p-value
in both healthy and nutrient-deficient samples, if the follow-
ing condition was met. Only pairs with at least five resolved 1 −0.896 0.0157
peaks were included in the analysis; we defined as a complete 4 −0.888 0.0182
3 −0.886 0.0189
match, when the respective peak was present in at least five
2 −0.815 0.0482
electropherograms out of a total of six. Hence, the meaning
of match was that the peak could be detected in three healthy
samples and three nutrient-deficient plant samples, as well
or, alternatively in at least five of the six electropherograms. suggest that changes in free glycan profiles detected in xylem
These pairs of peak areas were then compared by con- sap represent an early indicator of plant disease. Hence, CE-
trasts within an ANOVA framework, accounting for plant LIF should prove useful for determining the number and ra-
condition as a fixed effect, and the random factor of plant tio of N-glycans in plant samples.
nested within the condition. The Bonferroni correction was Limitation of the study: For rapid detection of nutrient de-
applied for multiplicity, meaning that in order to preserve ficiency in plants, we used multispectral imaging, as stated in
the overall type I error rate of 0.05 the test-wise signifi- the Methods section. Nutrient deficient plants were selected
cance level was divided by the total number of comparisons according to their symptoms visible to the naked eye.
performed.
The two conditions of the plant (healthy and nutrient de-
ficient) were also compared in terms of mean percentages of 4.1 Recommendations
chlorophyll content. A mixed model ANOVA was applied, ac-
counting for the fixed effect of condition and the random crop Future studies should be complemented by genomic tests
effect (nested in condition). for different plant diseases and/or nutrient deficiency (in
Correlation between chlorophyll content and peak areas this case shortage in N) to validate multispectral data prior
could not be studied within a multivariate model, because to further analyses. Methods used in the study (multispec-
of the low number of crop samples (i.e., three for each con- tral analysis and capillary electrophoresis with laser induced
dition). Univariate Pearson-type correlations were computed fluorescence detection) enabled sustainable measurements
between the mean chlorophyll content of each specimen and and novel technological solutions. Exoglycosidase digestion
their normalized peak areas (only for peaks for which all six based structural confirmation was beyond the scope of this
data were available). study.
We compared each GU value originating from healthy Given the significant correlation found between GU val-
and nutrient deficient plant samples in which significant dif- ues and crop health, the authors will continue working on
ferences between normalized peak areas were observed, with large scale glycan-profiling of plant samples, and will make
structures that match our separation conditions (e.g., APTS their results available to the scientific community in an open-
labeling, HR-NCHO separation gel buffer, separation temper- access database, named glycoplants.org (pre-launched).
ature 30°C, etc.). Considering that GU values are listed in the
Glycostore database up to two decimal places, we also con- The authors express special thanks to all members of the
sidered matches at this degree of accuracy [36,37], but only Biotechnology Engineering of Natural Resources, Universidad
as a guide to follow for GU accuracy, rather than for struc- Politécnica Salesiana, for their assistance in sample preparation.
tural comparison. All calculations were performed with SAS Authors are indebted to Mr. David Loja (Agroscan); and Prof. Dr.
version 9.4. Lenin Ramirez for multispectral imaging, and initial discussions
on the choice of statistical methods. Authors gratefully acknowl-
edge support by Genesis Sustainable Future Ltd., Hungary; Dama
4 Concluding remarks Research Center limited, Hong Kong, and BIONANO_GINOP-
2.3.2-15-2016-00017 project and the V4-Korea Joint Research
Statistically significant, negative correlation between chloro- Program, project National Research, Development and Innova-
phyll content and normalized peak areas was found for four tion Office (NKFIH) (NN 127062), both grants provided by the
peaks, as shown in Table 2. Hungarian Government. The authors also benefitted of EFOP-
We revealed a statistical correlation between nutrient- 3.6.3-VEKOP-16-2017-00009, co-financed by EU and the Euro-
deficient symptoms of crops (predicted by multispectral pean Social Fund. This is contribution #178 made by the Horváth
images and determination of total nitrogen content) and Csaba Memorial Laboratory of Bioseparation Sciences. The au-
changes in suspected free, non-conjugated N-glycans (PCT- thors thank Ms. Alice A. Lowy for proofreading the manuscript
FGs) profiles (based exclusively on GU values, determined and giving useful suggestions.
by CE-LIF alone). Therefore, we intend to further investigate
how specific these findings were. Beyond doubt, our results The authors have declared no conflict of interest.
Data availability statement [19] Langlois-Meurinne, M., Gachon, C. M., Saindrenan, P.,
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