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The Prognostic Value of Persistent Culture

Positivity in Fungal Keratitis in the Mycotic


Antimicrobial Localized Injection Trial

JULIA PICKEL, SHIVANANDA NARAYANA, TIRUVENGADA KRISHNAN, SEEMA RAMAKRISHNAN,


PUJA PRATIVA SAMANTARAY, TRAVIS C. PORCO, TRAVIS REDD, THOMAS M. LIETMAN, AND
JENNIFER ROSE-NUSSBAUMER

 PURPOSE: To evaluate the utility of repeat cultures at size at 3 months after controlling for baseline measures
days 3 and 7 after starting antifungal medications for (95% confidence interval 0.1 to 2.2 mm; P [ .03).
predicting outcomes in fungal keratitis.  CONCLUSIONS: While not as predictive as day 7 cul-
 DESIGN: Prespecified secondary analysis of the ran- tures, culture positivity at day 3 after starting treatment
domized clinical Mycotic Antimicrobial Localized Injec- is a significant predictor of the need for TPK in patients
tion trial. with moderate-to-severe filamentous fungal keratitis.
 METHODS: Patients presenting to Aravind Eye Hospi- This has applications for risk stratification, and may facil-
tal, Pondicherry, India, with fungal keratitis and visual itate earlier consideration of TPK in high-risk
acuity worse than 20/70 received topical natamycin and patients. (Am J Ophthalmol 2020;215:1–7. Ó 2020
were randomized to either receive intrastromal injection Elsevier Inc. All rights reserved.)
of voriconazole or topical therapy alone. All subjects
received corneal cultures at date of presentation, day

F
3, and day 7. Outcome measures included 3-week and UNGAL KERATITIS REPRESENTS A SIGNIFICANT PUB-
3-month visual acuity and scar size, corneal perforation, lic health challenge because, compared to bacterial
and/or the need for therapeutic penetrating keratoplasty etiologies, it is particularly difficult to treat and typi-
(TPK). Visual acuity and scar size were analyzed with cally results in worse visual outcomes.1 The Mycotic Ulcer
multiple linear regression controlling for baseline mea- Treatment Trial (MUTT) established topical natamycin as
sures. Survival analysis was used to analyze the risk the standard of care for managing filamentous fungal kera-
of corneal perforation and/or need for TPK. titis. However, many cases remain recalcitrant and continue
 RESULTS: Of the 70 study subjects with fungal kera- to progress despite therapy, resulting in significant visual
titis, 25 of 69 (36%) remained culture positive at day 3, morbidity, perforation, and need for surgical intervention.2–
4
and 20 of 62 (32%) were culture positive at day 7. Cul- It has been theorized that earlier surgical intervention in
ture positivity at day 3 conferred a hazard ratio of 2.8 recalcitrant cases, before the infection has progressed to the
for requiring TPK (P [ .03) but was not a statistically point of perforation or extension to the limbus or sclera,
significant predictor of perforation, scar size, or final vi- may result in better patient outcomes and allow improved
sual acuity. Culture positivity at day 7 had a hazard ratio resource allocation in resource-poor settings.5,6 In light of
of 3.5 for requiring TPK (P [ .003). Those with positive this, novel diagnostic tools to identify recalcitrant cases as
cultures at day 7 had on average 3 logMAR lines worse vi- early as possible are of paramount importance.
sual acuity at 3 months (95% confidence interval 0.9 to Recent work has suggested repeat cultures after initia-
5.2 logMAR lines, P [ .006) and 1.1 mm larger scar tion of treatment may have excellent prognostic value.
Secondary analyses of the MUTT I and MUTT II trials
identified persistent culture positivity at day 6 after initia-
tion of appropriate medical therapy as a significant predic-
Accepted for publication Feb 24, 2020.
tor of perforation, need for therapeutic penetrating
From the Francis I. Proctor Foundation (J.P., T.C.P., T.R., T.M.L., J.R.- keratoplasty (TPK), and worse anatomic and visual out-
N.), University of California San Francisco, San Francisco, California, comes.7,8 However, given the rapid worsening in many
USA; Aravind Eye Hospital, Pondicherry, India (S.N., T.K., S.R.,
P.P.S.); UCSF Epidemiology and Biostatistics (T.C.P., T.M.L.),
cases as well as the long incubation period of filamentous
University of California San Francisco, San Francisco, California, USA; fungi in culture, even earlier identification of persistent
UCSF Department of Ophthalmology (T.R., T.M.L., J.R.-N.), culture positivity would be beneficial.
University of California San Francisco, San Francisco, California, USA;
and The Permanente Medical Group, Redwood City, California, USA
The Mycotic Antimicrobial Localized Injection Trial
(J.R.-N.). (MALIN) found no benefit to adjuvant intrastromal vori-
Inquiries to Jennifer Rose-Nussbaumer, UCSF/Proctor Foundation, conazole in addition to topical natamycin in the treatment
Division of Research, The Permanent Medical Group, 513 Parnassus
Ave, S347, San Francisco, CA 94143, USA; e-mail: jennifer.
of filamentous fungal keratitis in regard to repeat culture
rose-nussbaumer@ucsf.edu positivity, week 3 or month 3 visual acuity, rate of corneal

0002-9394/$36.00 © 2020 ELSEVIER INC. ALL RIGHTS RESERVED. 1


https://doi.org/10.1016/j.ajo.2020.02.021
perforation, or need for TPK.9 Herein we perform a second- mid-stromal level of the cornea using a 1 mL tuberculin sy-
ary analysis of these patients to evaluate the utility of ringe with a 30 gauge needle (Aurolab) for patients ran-
persistent culture positivity at day 3 and day 7 in predicting domized to the intrastromal voriconazole and 5% topical
anatomic and functional outcomes in patients with fungal natamycin study arm.
keratitis.
 MICROBIOLOGY METHODS: Corneal ulcers were scraped
and cultured at the baseline visit. Repeat scraping and cul-
ture was performed at the day 3 and day 7 study visits. A
METHODS 0.5% solution of tetracaine topical anesthetic (Aurolab)
was applied to the affected eye before corneal scrapings
 STUDY PARTICIPANTS: The MALIN was a randomized, and culture were performed. A sterilized Kimura spatula
outcome-masked, 2-arm clinical trial comparing the use of was used to scrape from the leading edge to the base of
natamycin vs natamycin and intrastromal voriconazole in the ulcer. Two scrapings from the affected eye were directly
the treatment of filamentous fungal corneal ulcers.9 Inclusion smeared on glass slides for Gram staining and potassium hy-
criteria were a presence of smear-positive moderate-to-severe droxide mount. Two further scrapings were directly inocu-
filamentous fungal corneal ulcer, visual acuity worse than 20/ lated on sheep’s blood agar and potato dextrose agar for
70 in the affected eye, age between 19 and 80 years, patient fungal culture. Fungal cultures were checked daily for
basic understanding of the study and willingness to partici- growth. Cultures were considered positive if there was
pate as determined by the treating physician, and commit- any growth on 2 of the 3 media or if there was moderate-
ment to return for follow-up visits. Patient exclusion to-heavy growth on at least 1 medium.
criteria included evidence of a concomitant infection, history
of corneal transplant or recent ophthalmic surgery, lack of  OUTCOME ASSESSMENT: The primary outcome in this
light perception in the affected eye, visual acuity worse secondary analysis was the need for TPK. Other outcomes
than 20/200 in the unaffected eye, and the presence of cogni- included perforation, final visual acuity, scar size, and
tive impairment. Written informed consent was obtained epithelial defect size. Best spectacle-corrected visual acuity
from all participants. All study physicians performing corneal was measured at 4 meters at the baseline, month 1, and
ulcer scraping and follow-up examinations, microbiologists, month 3 study visits using the protocol from the Age-
and refractionists were masked to patient study intervention. Related Eye Disease Study using Early Treatment Diabetic
Ethical approval for the study was granted from the Univer- Retinopathy Study tumbling E charts (Charts 2305 and
sity of California San Francisco Institutional Review Board 2305A; Precision Vision, Woodstock, Illinois, USA).10
and the Aravind Eye Care System Institutional Review The infiltrate/scar size and epithelial defect size of the ul-
Board. The trial was registered with clinicaltrials.gov cer were defined as the geometric mean of the longest diam-
(NCT02731638). The trial conformed to the ethical guide- eter and the maximum distance perpendicular to this
lines outlined in the Declaration of Helsinki. diameter. Baseline infiltrate depth was used as a measure
of ulcer severity. Infiltrate/scar depth was categorized as
 INTERVENTION: All study visits took place at Aravind anterior third, middle third, or posterior third based on
Eye Hospital in Pondicherry, India. Patients reported to extension into the corneal stroma, with posterior third
Aravind Eye Hospital for baseline, day 2 (time of intrastro- involvement considered the most severe.
mal voriconazole injection in the group randomized to this
intervention), day 3, day 5, day 7, month 1, and month 3  STATISTICAL ANALYSIS: The likelihood of persistent
study visits. All patients began 5% natamycin topical ther- culture positivity among different fungal species was
apy hourly while awake beginning at the baseline visit, in compared using a 2-sample test of proportions. Survival
addition to prophylactic topical moxifloxacin 0.5% (Auro- analysis evaluating risk of TPK and perforation were
lab, Madurai, India) every 2 hours while awake and topical performed using Kaplan-Meier plots and multivariate Cox
homatropine 2% (Aurolab) 3 times daily. Thirty-five pa- hazard ratio (HR) models, controlling for baseline culture
tients were randomized to receive intrastromal voricona- status. Fungal species and baseline ulcer depth were not sig-
zole (Aurolab) and 5% topical natamycin (Aurolab) and nificant predictors in the model. All analyses were conduct-
35 were randomized to receive 5% topical natamycin ed with Stata version 13 (StataCorp, College Station,
only, using R Statistical Package, Version 2.12 (R Founda- Texas, USA) and R (R Foundation, Vienna, Austria). A
tion for Statistical Computing, Vienna, Austria). Patients 2-tailed alpha of 0.05 was considered statistically significant.
randomized to intrastromal voriconazole received an injec-
tion at the baseline, day 3, and day 5 visits. The voricona-
zole injection was prepared by reconstituting white freeze- RESULTS
dried/lyophilized voriconazole (Aurolab) with lactated
Ringer’s solution (Aurolab) to form a 0.5 mg/mL solution.  DEMOGRAPHICS AND MICROBIOLOGIC RESULTS:
A total of 0.1 mL voriconazole solution was injected at the Seventy patients with smear-positive fungal keratitis

2 AMERICAN JOURNAL OF OPHTHALMOLOGY JULY 2020


TABLE 1. Baseline Characteristics According to Repeat Culture Status at Days 3 and 7 After Diagnosis of Filamentous Fungal Keratitis

Day 3 Culture Status Day 7 Culture Status

Baseline Characteristic Positive (n ¼ 25) Negative (n ¼ 44) Positive (n ¼ 20) Negative (n ¼ 42)

Sex (female) 9 (36%) 17 (39%) 8 (40%) 14 (33%)


Age (years) 52.5 6 14.5 51.3 6 10.5 52.4 6 13.0 53.0 6 13.0
Occupation
Agricultural 7 (28%) 18 (41%) 4 (20%) 19 (45%)
Other 18 (72%) 26 (59%) 16 (80%) 23 (55%)
Ulcer location
Central 22 (88%) 39 (89%) 19 (95%) 36 (86%)
Peripheral 3 (12%) 5 (11%) 1 (5%) 6 (14%)
Hypopyon
Yes 19 (76%) 21 (48%) 13 (65%) 25 (60%)
No 6 (24%) 23 (52%) 7 (35%) 17 (40%)
Infiltrate depth
0-33% 9 (36%) 13 (30%) 8 (40%) 13 (31%)
>
_33%-67% 7 (28%) 20 (46%) 7 (35%) 16 (38%)
>
_67%-100% 9 (36%) 11 (25%) 5 (25%) 13 (31%)
Infiltrate diameter (mm) 5.98 6 1.51 5.51 6 1.61 4.87 6 1.53 4.51 6 1.49
Epithelial defect diameter (mm) 5.27 6 1.55 4.80 6 1.25 5.46 6 1.53 4.88 6 1.24

Values for continuous variables are displayed as mean 6 standard deviation.

were included in the study, with a mean 6 standard de- derwent TPK during the observation period for lack of
viation (SD) age of participants of 52 6 13 years and a response to medical therapy with impending perforation
range from 19 to 80 years. Forty-four subjects (63%) or limbal involvement. Among these subjects, the median
were male. Patients with evidence of concomitant bac- time to TPK was 30 days, with a range of 3 to 141 days.
terial infection on smear were ineligible for the study. Adjusting for baseline culture positivity, subjects with
Subsequent bacterial cultures were negative for 70 of persistent culture positivity at day 3 were significantly
70 patients (100%) at baseline, 69 of 69 (100%) at day more likely to require subsequent TPK (HR 2.8, P ¼
3, and 61 of 62 (98%) at day 7. Baseline fungal cultures .026). This association remained statistically significant
were positive for 57 of the 70 participants (81%). Of when adjusting for deeper baseline infiltrate depth and
those that were culture positive at baseline, 19 grew Aspergillus ulcers, each of which were associated with
Fusarium species (33%), 17 grew Aspergillus species increased risk of TPK on univariate analysis. The Kaplan-
(30%), and 21 grew other filamentous fungal species Meier survival curves for TPK according to day 3 culture
(37%). Twenty-five of 69 subjects remained culture pos- status are depicted in Figure 1. Adjusting for baseline cul-
itive at day 3 (36%). Of these cultures, 3 grew Fusarium ture positivity, persistent culture positivity at day 7 was
(12%), 13 grew Aspergillus (52%), and 9 grew other fila- also strongly associated with subsequent TPK (HR 3.5,
mentous species (36%). Twenty of 65 subjects were P ¼ .003). The Kaplan-Meier survival curves for TPK ac-
persistently culture-positive at day 7 (30%). Of these, cording to day 7 culture status are depicted in Figure 2.
2 grew Fusarium (10%), 12 grew Aspergillus (60%), and Six of the 70 subjects (9%) developed corneal perfora-
6 grew other filamentous species (30%). Two of the 19 tion. Among these subjects, the median time to perforation
Fusarium ulcers (11%) remained culture positive at day was 85 days, with a range of 4 to 141 days. Persistent culture
7, compared to 12 of the 17 Aspergillus ulcers (71%). positivity at day 3 was not significantly associated with risk
Aspergillus ulcers were significantly more likely to of perforation (HR 1.1, P ¼ .92), nor was culture positivity
remain culture positive through day 7 compared to Fusa- at day 7 (HR 2.6, P ¼ .26). The majority of corneal ulcers
rium ulcers (P < .001). The average time to culture pos- remained smear positive at day 3 (86%; 59/69), and this was
itivity was 5.8 (3.9) days for baseline cultures, 5.0 (2.6) not predictive of need for TPK (HR 0.63, 95% CI 0.2-1.7,
days for day 3 cultures, and 4.4 (2.0) days for day 7 cul- P ¼ .36) or corneal perforation (HR 0.65, 95% CI 0.1-5.9,
tures. A comparison of baseline characteristics between P ¼ .7).
subjects based on culture status at days 3 and 7 of exam-
ination is provided in Table 1.  VISUAL AND ANATOMIC OUTCOMES: Mean visual acu-
ity at baseline was 1.59 6 0.35 log MAR. At 3 months
 THERAPEUTIC PENETRATING KERATOPLASTY AND follow-up, mean visual acuity was 1.28 6 0.63 log
PERFORATION: A total of 28 of the 70 subjects (40%) un- MAR. Persistent culture positivity at day 3 was not a

VOL. 215 THE PROGNOSTIC VALUE OF REPEAT CULTURE IN FUNGAL KERATITIS 3


FIGURE 1. Kaplan-Meier survival curve comparing the probability of eventuating to therapeutic penetrating keratoplasty based on
3-day culture status.

significant predictor of best-corrected visual acuity at ment confers a significantly increased risk of requiring
3 weeks (P ¼ .63) or 3 months (P ¼ .69) after presentation TPK; (2) persistent culture positivity at day 7 is strongly
(Table 2). However, day 7 culture positivity was associ- predictive of need for TPK, final visual acuity, and corneal
ated with significantly worse visual acuity at both week scar size; and (3) Aspergillus ulcers were more likely to
3 (P ¼ .003) and month 3 (P ¼ .006) (Table 2). After remain culture positive and were associated with worse out-
adjusting for baseline visual acuity, on average subjects comes. These findings confirm the prognostic utility of
with persistent culture positivity at day 7 had 3 logMAR repeat cultures at day 7, and are a novel demonstration of
lines worse visual acuity compared to those who were cul- the utility of day 3 cultures for predicting the need for
ture negative (95% CI 0.9 to 5.2 logMAR lines, P ¼ .006). TPK in fungal keratitis.
With respect to corneal scar size at 3 months, persistent Several clinical factors have been evaluated as
culture positivity at day 3 was not a significant predictor of possible prognosticators, including visual acuity at pre-
final scar size (multivariate linear regression adjusting for sentation, epithelial defect size, patient age, size and
baseline infiltrate size, P ¼ .55). After adjusting for base- depth of infiltrate, and the presence of ulcer pigmenta-
line infiltrate size, subjects who remained culture positive tion.11 However, clinical parameters can be problematic
at day 7 had an average final scar size 1.1 mm greater than as prognostic markers owing to inter-examiner vari-
those without (95% CI 0.1-2.2 mm; P ¼ .03). ability, even among expert cornea specialists.12,13 Previ-
ous findings indicate that patients who will eventually
need surgery may benefit from earlier intervention
before infection reaches the limbus or results in perfora-
DISCUSSION tion.5,6 However, clinicians managing fungal ulcers
THIS PRESPECIFIED SECONDARY ANALYSIS OF A CLINICAL have few clinical indicators to determine which pa-
trial evaluates the prognostic value of persistent culture tients are likely to require TPK. Thus, an objective
positivity at days 3 and 7 of treatment in patients with fila- parameter that predicts need for TPK as early as
mentous fungal keratitis. Key findings include the possible is highly beneficial. Our results indicate that
following: (1) persistent culture positivity at day 3 of treat- persistent culture positivity at day 3 after initiation of

4 AMERICAN JOURNAL OF OPHTHALMOLOGY JULY 2020


FIGURE 2. Kaplan-Meier survival curve comparing the probability of eventuating to therapeutic penetrating keratoplasty based on
7-day culture status.

TABLE 2. Visual Acuity 3 Weeks and 3 Months After Fungal Keratitis Infection According to Culture Status at Day 3 and Day 7

Culture Result Week 3 LogMAR BSCVA (Mean 6 SD) Coefficienta 95% CI P

Day 3 culture results 0.05 (-0.16 to 0.27) .63


Positive 1.35 6 0.64
Negative 1.29 6 0.62
Day 7 culture results 0.31 (0.11 to 0.52) .003
Positive 1.67 6 0.30
Negative 1.17 6 0.69

Month 3 LogMAR BSCVA (Mean 6 SD) Coefficient 95% CI P

Day 3 culture results 0.05 (-0.18 to 0.27) .69


Positive 1.32 6 0.61
Negative 1.26 6 0.65
Day 7 culture results 0.31 (0.09 to 0.52) .006
Positive 1.56 6 0.36
Negative 1.09 6 0.70

BSCVA ¼ best spectacle-corrected visual acuity.


a
Multiple linear regression analysis adjusting for baseline BSCVA.

treatment was a statistically significant indicator of It is interesting that smear positivity at 3 days does not
need for subsequent TPK, with a hazard ratio of 2.8. predict the need for TPK. Previous reports have found 7-
This introduces a new and potentially valuable param- day smear results to be predictive of outcomes in fungal
eter to follow in the management of fungal keratitis. keratitis, including the need for TPK.7,8 This finding is

VOL. 215 THE PROGNOSTIC VALUE OF REPEAT CULTURE IN FUNGAL KERATITIS 5


suggestive that while organisms are still present in the ma- This study demonstrates the value of persistent cul-
jority of ulcers at 3 days after initiating treatment, many of ture positivity at day 3 in predicting the need for surgi-
them are no longer viable, as demonstrated by the fact that cal intervention in patients with moderate-to-severe
they do not grow in culture. filamentous fungal keratitis, and confirms the value of
Persistent culture positivity at day 7 of treatment also day 7 culture positivity in predicting perforation and vi-
seems to be predictive of need for surgical intervention, sual acuity. These results indicate that obtaining repeat
but additionally predicts final anatomic and visual out- cultures at days 3 and 7 after initiating therapy for pa-
comes. This is supported by prior studies evaluating the tients with recalcitrant fungal corneal ulcers is
role of repeat culture at days 6 and 7.7,8 Although day 7 warranted. These findings also indicate the need for
culture positivity has a stronger association with out- further studies to determine whether early TPK in
comes, day 3 may be more clinically useful in determining high-risk patients identified by repeat culture may result
who might benefit from early surgical intervention. in better outcomes.
Fungal cultures can take upwards of 1 week to grow; day
3 cultures are available almost 1 week prior to day 7 cul-
tures during the crucial period of decision-making
regarding response to therapy and early surgical interven- CRediT AUTHORSHIP CONTRIBUTION
tion. Many ulcers have already progressed to full- STATEMENT
thickness perforation or threatening limbal involvement
requiring TPK when the results of day 7 cultures are JULIA PICKEL: INVESTIGATION, DATA CURATION, WRITING
evident. Outcomes of TPK at this point are poor. These - original draft. Shivananda Narayana: Conceptualization,
findings further reinforce the need for additional studies Investigation, Writing - review & editing. Tiruvengada
to determine whether earlier surgical intervention is bet- Krishnan: Conceptualization, Supervision, Writing - re-
ter in fungal keratitis, in which case serial repeat cultures view & editing. Seema Ramakrishnan: Conceptualization,
may play an important role in selecting patients who are Investigation, Writing - review & editing. Puja Prativa
most likely to benefit from early surgery. Samantaray: Investigation, Writing - review & editing.
This study has several limitations. First, this was a sec- Travis C. Porco: Formal analysis, Writing - review & edit-
ondary analysis of a randomized trial, and thus the results ing. Travis Redd: Formal analysis, Data curation, Writing -
should be interpreted with appropriate caution. All pa- review & editing. Thomas M. Lietman: Conceptualiza-
tients were enrolled in the study in South India, which tion, Supervision, Methodology, Writing - review & edit-
may limit the generalizability of these results to other popu- ing. Jennifer Rose-Nussbaumer: Conceptualization,
lations owing to differences in geographic microorganism Methodology, Investigation, Funding acquisition, Writing
diversity, climate, and host genetic factors.14 - review & editing.

FUNDING/SUPPORT: NIH, NEI GRANT #EYK23025025RPB DEPARTMENT GRANT TO THE UNIVERSITY OF CALIFORNIA, SAN
Francisco. The authors indicate no funding support. Financial Disclosures: None of the authors has a proprietary/financial interest to disclose. All authors
attest that they meet the current ICMJE criteria for authorship.

REFERENCES 5. Sharma N, Jain M, Sehra SV, et al. Outcomes of therapeutic


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