Virus and Its Identification in Modern Era

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International Journal of Trend in Scientific Research and Development (IJTSRD)

Volume 6 Issue 7, November-December 2022 Available Online: www.ijtsrd.com e-ISSN: 2456 – 6470

Virus and its Identification in Modern Era


Dr. Hari Krishna Shriwas1, Dr. Sandeep Singh Tiwari2
1
Associate Professor, Department of Maulik Siddhanta,
Jeevan Jyoti Ayurvedic Medical College, Aligarh, Uttar Pradesh, India
2
Associate Professor, Department of Rog Nidan, All India Institute of Ayurveda, New Delhi, India

ABSTRACT How to cite this paper: Dr. Hari Krishna


While discoveries about viruses, which carry the largest genetic Shriwas | Dr. Sandeep Singh Tiwari
information code in nature, have continued unabated for more "Virus and its Identification in Modern
than a century, viruses are constantly affecting the global Era" Published in
International
biological balance. The main characteristics that make viruses
Journal of Trend in
important in this balance include epidemics and mass deaths, the
Scientific Research
risks of being used as biological weapons, and the continued lack and Development
of an effective vaccine or specific treatment for many viruses. (ijtsrd), ISSN:
However, viruses also offer incredible opportunities for the 2456-6470, IJTSRD52363
scientific world, due to biotechnological innovations that have Volume-6 | Issue-7,
gained momentum in recent years. The detection of viruses is of December 2022, pp.450-456, URL:
urgent importance for the early detection of pandemics and www.ijtsrd.com/papers/ijtsrd52363.pdf
epidemics. In this chapter, we discuss the classification of viruses,
the effects of viruses on biological balance of our planet, the Copyright © 2022 by author (s) and
importance of detecting viruses that have the potential to be used International Journal of Trend in
as biological weapons or that carry epidemic or pandemic risks, Scientific Research and Development
Journal. This is an
and the characteristics of such viruses.
Open Access article
KEYWORDS: virus, biotechnology, epidemic distributed under the
terms of the Creative Commons
Attribution License (CC BY 4.0)
(http://creativecommons.org/licenses/by/4.0)

INTRODUCTION
Viruses are non-living micro-organisms that are only virus, Rift Valley fever virus, Crimean Congo
able to replicate in living cells. However, a given hemorrhagic fever virus, Ebola virus, and
virus cannot replicate or cause disease in all living Marburgvirus are important as biological warfare
organisms, because the replication of viruses is agents, while some viruses are critical, as they
restricted by host and tissue tropism. Different types
have pandemic potential (influenza viruses,
of virus infect different cellular organisms. Some
coronaviruses).Congenital infections (such as
viruses are able to infect fungi, plants, archaea, and
cytomegalovirus, rubella, and parvovirus), childhood
bacteria, but these viruses do not cause infection or
diarrheal diseases (rotavirus), recurrent or reactivated
disease in humans. According to Current Taxonomy
infections in cases of immunodeficiency (human
Release 2019, produced by the International
cytomegalovirus, JC virus, BK virus, and Epstein-
Committee on Taxonomy of Viruses (ICTV), more
Barr virus), chronic diseases (the hepatitis B and C
than 6500 viruses have been identified at the species
viruses, HIV), and viruses that lead to economic
level. More than 300 of these viruses are associated
damage to agriculture and veterinary medicine (rabies
with human infection, but not all viral infections
virus, foot and mouth disease virus, influenza virus,
result in disease. Viruses that cause disease are
and Newcastle disease virus) are further examples.
defined as pathogenic species, and the number of
Viruses are classified into two main groups, DNA and
virus species that causes disease in humans is over
RNA viruses, based on their genetic structures [1].
200. Pathogenic viruses that spread among humans
RNA viruses usually cause transient infections and
and animals can cause serious mortality and
are cleared by the immune system, however, there are
morbidity, as well as significant economic burdens.
exceptions to this. Hepatitis C virus is an RNA virus
Viruses are important to humanity for a variety of that can be completely cleared from the body, but if
reasons. Smallpox virus, Nipah virus, Lassa fever

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left untreated, it can become permanent, because it infections are carried out using laboratory tests
can escape from the control of the immune system. (figure 1.1). Viral infections can be diagnosed
directly by methods such as the visualization of
In the last 30 years, there have been significant
viruses, the detection of viral antigens, the isolation of
changes in the epidemiology of viruses associated
a virus by replicating it in a cell culture medium, and
with human infections. While many viruses (such as
by the observation of viral nucleic acids. Viral
the West Nile virus) have spread to regions where
infections can also be identified indirectly by
they had never been detected before, others have
different methods, such as the detection of virus-
caused global concern after a long period of silence,
specific antibodies, the examination of changes (such
such as the Zika virus. Apart from this, new viruses
as inclusion bodies) in infected cells using light
have emerged and caused regional and global
microscopy, and the indirect examination of growths
epidemics, such as theMiddle East respiratory
in cell cultures. Laboratory tests are also used for
syndrome-related coronavirus (MERS-CoV) and
different clinical purposes, such as monitoring the
severe acute respiratory syndrome-related coronavirus
patient in some infections, investigating the presence
2 (SARS-CoV-2). Moreover, due to developments in
of antiviral resistance, and distinguishing between
molecular biology and genetics, it is also important to
primary and reactivated infections. The detection of
monitor the natural viruses and modified viruses that
viruses is also critically important in epidemic
can be manipulated more easily and which have the
outbreak surveillance and other epidemiological and
potential to be used as biological warfare agents.
environmental analyses, phylogenetic studies, the
Viruses are mainly transmitted to humans through the screening of blood and blood products, veterinary
respiratory tract, food and drink, skin, and blood. studies, and tests for biosecurity breaches (due to the
Some viruses are transmitted to humans by insects, risk that a virus may be used as a biological weapon).
such as mosquitoes and ticks, and mammals, such as
cats, dogs, mice, bats, and birds. Since viruses are
host-dependent micro-organisms, their distribution in
geographic regions is directly related to their host
distribution. Humans are the only hosts of some
viruses in nature; such viruses, which do not have an
animal reservoir, continue their existence by
spreading among people. Cultural habits, nutritional
and sanitation conditions, the frequency of risky
behaviors, drug addiction, the proportion of the
immune deficient population in a society, access to
health services, vaccination programs, and other Figure: virus Detection
health policies are some of the social characteristics Nowadays, new molecular techniques that allow the
that define the boundaries of the epidemiology of detection of unknown microorganisms, specific cell
these viruses. On the other hand, in the distribution of lines, and chimeric cultures, animal models that
animal viruses associated with human infections increase the probability of isolation of viruses, and
(zoonotic viruses), the possibility of contact between metagenomic-metaviromic studies have increased the
humans and animals (for example, the intersection of number of known viruses and made it possible to
the habitats of humans and reservoir animals) plays monitor genomic variations and epidemiological
an important role in viral epidemiology. The effects changes in these viruses. The fast detection of
of climate change on the circulation of migratory pathogens, using methods that offer specific,
birds and arthropods such as mosquitoes, human sensitive, fast, and reproducible results, plays an
movements that have accelerated with the increase in important role in preventing the spread of viral
transportation facilities, and forced migration are infections and decreasing the pathologies (mortality
other factors that determine the distribution and morbidity) associated with infection. Rapid
boundaries of viral diversity in human populations. identification of the presence of a virus in
Importance of virus detection: contaminated food or water, surfaces, or patient
Typical (pathognomonic) symptoms with diagnostic samples is a prerequisite for effectively preventing
value can be seen in some viral infections. However, viral outbreaks, epidemics, and bioterrorism. As we
in most viral infections, the clinical findings are have experienced in the SARS-CoV-2 pandemic, it is
similar to those for multiple viruses, and sometimes far from realistic for developed countries to isolate
infections can take place without any symptoms themselves from the rest of the world due to intense
(asymptomatic). Therefore, precise diagnoses of viral and rapid human movement. For these reasons, the

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development of easy-to-use, low-cost detection epidemic have been administered to millions of
methods that require fewer complex devices and people worldwide. Even if these vaccines do not
equipment in epidemic management and isolation- prevent the transmission of infection, they are
based public health policies is critical in the expected to prevent serious illnesses requiring
management of global epidemics. hospitalization and SARS-CoV-2 related deaths and
slow the spread of the epidemic. The protection
Coronavirus:
Coronavirus The name coronavirus is derived from period and protective effectiveness of vaccines in
the Latin word ‘corona,’ meaning halo, which different populations are expected to be revealed in
expresses the similarity of the characteristic upcoming studies. Laboratory diagnosis of
appearance of the surface protrusions of the virus to coronavirus infections is based on tests that aim to
the halo (solar corona) around the Sun. There are 46 detect viral RNA using a PCR (polymerase chain
virus species in five genera in the Coronaviridae reaction) and viral antigens or specific antibodies
family. Six of these species were known to be against the virus. Virus isolation is time-consuming; it
associated with human infection. In the last days of is not used in routine diagnosis and also requires a
2019, a new coronavirus identified as a pneumonia biosafety level 3 (BSL-3) laboratory using BSL-3
agent, which first appeared in Wuhan, China, spread practices. During the COVID-19 pandemic, it has
rapidly among people, and the number of coronavirus been of great importance for the rapid and correct
species associated with human infection was updated diagnosis of cases, for the detection and isolation of
to seven. Among these viruses, HCoV-229E (mid- people with asymptomatic infections who can spread
1960), HCoV-OC43 (mid-1960), NL63 (in 2004), and the infection, and to keep the pandemic under control.
HCoV-HKU1 (in 2005) are known to be seasonal For this purpose, many biosensor-based methods have
coronaviruses that are common worldwide and which also been developed.
cause respiratory infections that are generally Human immunodeficiency virus:
associated with mild symptoms in humans. There are ten different viruses in the Lentivirus genus
of the Retroviridae family, and two of these viruses,
human immunodeficiency virus 1 (HIV-1) and HIV-
2, are associated with human infection.The disease
known as acquired immunodeficiency syndrome
(AIDS) was first reported in 1981 in the United States
of America (USA) in a group of homosexual men
with Pneumocystis jirovecii pneumonia and Kaposi’s
sarcoma. In 1982, some researchers from the CDC
(Centers for Disease Control and Prevention)
described similar cases in injected-drug users, sex
workers, and people using blood and blood products.
As a result of subsequent studies, the HIV-1 and HIV-
2 viruses were found to be infectious agents for AIDS
Figure: Corona- virus
in 1983 and 1986, respectively. HIV-1 accounts for
The major transmission route of coronaviruses in the vast majority of human lentivirus-originated
humans, which is similar to those of other respiratory disease worldwide. HIV-2, whose genetic
viruses, is through the inhalation of droplets composition and disease symptoms are very similar to
containing infective viral particles produced when an HIV-1, is endemic in West Africa and is seen in the
infected person speaks, coughs, or sneezes. Although USA, albeit at low rates. Within days or weeks
it is not a predominant transmission mode, touching following exposure to HIV, a disease picture that is
the mouth, nose, or eyes (autoinoculation) after defined as primary HIV infection (acute viral
contact with virus-contaminated surfaces or fomites is syndrome) and which usually presents acute flu-like
also considered to be one of the possible transmission symptoms occurs in most infected individuals. AIDS
routes. The most effective way to prevent coronavirus patients typically show signs of a selective decrease
infections, which exhibit similar transmission in the CD4+ helper-T lymphocytes in their peripheral
characteristics to those of other respiratory infections, blood samples and immune system failure, which is
includes standard measures taken to prevent droplet due to this decrease. After acute infection, due to the
and aerosol transmission. Inactivated full-virus establishment of a balance between viral replication
vaccines, messenger RNA (ribonucleic acid) and host immune response, a latency period begins,
vaccines, and vector-based vaccines developed within during which clinical symptoms are not seen for
about a year of the onset of the SARS-CoV-2 many years in most infected individuals. However,

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the phrase ‘latency period’ can be misleading, given DNA. Among these viruses, hepatitis B and C viruses
the very high rate of virus replication and the high can cause chronic infection, liver disease, cirrhosis,
daily production–destruction rate of CD4+ T-cells. and even hepatocellular carcinoma (HCC) in the long
Because this process causes a gradual decrease in term. Chronic hepatitis B and C infections are the
CD4+ T-cells, albeit slowly, when the CD4+ T-cell most important causes of HCC, and these two viruses
ratio falls below 200 µL−1, many AIDS defining constitute the majority of cases (80%) worldwide.
diseases, including various opportunistic infections Although hepatitis A, B, C, D, and E viruses all cause
and some cancers, are seen, and the process results in liver disease, they differ in important ways, such as
death in untreated cases. their transmission patterns, the severity of the disease,
Although an effective treatment exists today, these geographic distribution, and prevention. While
high mortality rates seem to be related to the inability hepatitis A and hepatitis E viruses are common in
to control the infection in regions where the majority countries with poor sanitation conditions in the world,
of infected individuals have limited access to hepatitis B and C are seen all over the world, being
treatment. All these data highlight that HIV is one of more common in some parts of Africa, Asia, and
the most important viral infections that has affected South America. It is estimated that 325 million people
humanity in the last 40 years. HIV infection is worldwide are living with hepatitis B and/or C, and
transmitted mainly by unprotected sexual intercourse that most are without access to diagnosis and
with an infected partner, the injection or transfusion treatment. Hepatitis A and E viruses are mainly
of contaminated blood or blood products, infertility transmitted by the fecal–oral route, while the hepatitis
treatment practices, skin grafting, organ B, C, and D viruses are mainly transmitted by the
transplantation, the sharing of non-sterile injection parenteral route. For the hepatitis B virus, perinatal
equipment previously used by an infected person, and transmission and horizontal transmission (exposure to
mother-to-baby transmission (during pregnancy, infected blood) are important transmission routes,
birth, and breastfeeding). while needle stick injury, exposure to infected blood
and body fluids, and sexual transmission are other
A preventive vaccine has not yet been developed for transmission routes. The hepatitis C virus, on the
HIV infection. To reduce the effects of infection and other hand, spreads via blood and injected-drug use
to control or eliminate HIV-1 reservoirs, there is through the sharing of injection equipment. While
increasing interest in the use of agents that activate there is a preventive vaccine for hepatitis A, B, and E
the latent virus, therapeutic vaccines, widely (the hepatitis E vaccine is used in China), a
neutralizing monoclonal antibodies, gene therapy, and preventive vaccine has not yet been developed for the
a variety of other pharmacological and hepatitis C virus. Although powerful treatment
immunological approaches. protocols have been developed and are in use for the
Many different tests can be used to diagnose acute hepatitis B and C viruses, which are associated with
HIV-1 infection. Laboratory diagnosis of HIV chronic diseases, access to treatment is easier in
infection is based on the detection of virus and virus developed countries, but a large proportion of
components including viral deoxyribonucleic acid infected people is deprived of access to treatment.
(DNA), RNA, and antigens, as well as antibodies Ebola:
against the viral antigens in the blood. The diagnosis There are six genera and 11 species in the Filoviridae
of acute infection is based on the detection of HIV-1 family; one species in the Marburgvirus genus in this
replication by molecular methods in the absence of family (Marburg marburgvirus) and four species in
HIV-1 antibodies (as they are not yet present in the the Ebolavirus genus are associated with human
early stages of infection). infection. The Ebolavirus species isolated on the
Hepatitis: African continent, namely, the Bundibugyo Ebola
During many viral infections, liver tissue can be virus, the Sudan Ebola virus, and the Zaire Ebola
directly or indirectly affected, and hepatitis may virus cause outbreaks with high mortality in humans,
develop. However, the definition of hepatitis viruses but Taï Forest Ebola virus infections are rare.
is used to refer to viruses that show tropism directly Although there are serological data on human
to the liver: the hepatitis A virus (Hepatovirus A), the infections for Reston Ebola virus, another species first
hepatitis B virus, the hepatitis C virus (Hepacivirus isolated in macaques in the Philippines, human–
C), the hepatitis D virus (of the hepatitis genus human transmission has not been demonstrated.
Deltavirus), and the hepatitis E virus (Orthohepevirus Ebola virus disease (EVD) is an acute severe illness
A). Each of these viruses is classified as belonging to with a high mortality rate caused by pathogenic Ebola
a different family, and they are RNA viruses except virus strains. The mortality rate has ranged from 25%
for the hepatitis B virus, whose genome structure is to 90% in various outbreaks of the disease over 40

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years. The Ebola virus was first identified in 1976 in discovered in the Zika forest (Kampala, Uganda) in
Zaire (now the Democratic Republic of the Congo 1947.The majority of Zika virus infections have a
(DRC)) and South Sudan during two concurrent subclinical course, but some patients may experience
outbreaks. In these epidemics, a total of 602 people clinical symptoms similar to those of other arboviral
were infected with Ebola virus and the mortality rate infections. Eighty percent of infected people are
was found to be 71.59%. On March 23, 2014, the asymptomatic. The disease symptoms are usually
West African epidemic broke out, which represented mild and are characterized by the acute onset of mild
the first global threat posed by Ebola virus. A few fever, maculopapularrash, arthralgia, and non-
months later, the World Health Organization (WHO) purulent conjunctivitis. Until 2015, no deaths were
stated that this epidemic was an international ‘public attributed to Zika virus infections. Three deaths
health emergency.’ In the biggest Ebola virus attributed to the Zika virus were first reported in
outbreak, 28603 EVD cases were reported with a Brazil, including the death of a newborn with
mortality rate of 39.5%. Although Ebola virus microcephaly, on 28November 2015. Also, various
infections are only common in West Africa, the virus neurological (Guillain Barré syndrome,
is classified as a category A pathogen that could be meningoencephalitis) and autoimmune
abused as a bioterrorism agent due to its potential to (thrombocytopenic purpura, leukopenia)
spread globally. Ebola virus infections can be complications have been reported in Zika-virus-
transmitted in the following ways: via the contact of infected people. While the Zika virushas attracted
infected organisms with tissue, blood, and other body great attention in recent years due to the epidemics it
fluids, via contaminated materials or medical devices, causes and it spossible relationship with serious
and during unhygienic practices (such as cutting up a autoimmune–neurological diseases, it was identified
chimpanzee for food or traditional burial practices). as an urgent public health problem of international
The Ebola virus is classified at level 4 in the biosafety importance by the WHO in February 2016.
risk group; when working with it in the laboratory,
Norovirus
facilities and equipment that provide the highest level Norwalk virus, the only species in the Norovirus
of biosecurity are required. The laboratory diagnosis genus, is a non-enveloped, positive sense RNA virus
of Ebola virus can be accomplished by examining classified as being in the Caliciviridae family.
blood, body fluids, and other clinical specimens from Another species associated with human infection in
animals and humans. Enzyme-linked immunosorbent the Caliciviridae family is the Sapporo virus, theonly
(ELISA) tests, antigen detection tests, serum species in the Sapovirus genus. Both viruses generally
neutralization tests, and reverse-transcription PCR induce self-limiting gastroenteritis. Long-term illness
can be used to examine these samples. IgM and IgG is seen in immunocom promised individuals.
antibodies can be measured using Vomiting is a consistent and remarkable symptom;
immunofluorescence antibody (IFA), or other symptoms may include nausea, diarrhea,
immunoassay-based tests. abdominal cramping, fever, and malaise. Norwalk
virus causes a brief but unpleasant illness, also known
as stomach flu, viral gastroenteritis, and winter
vomiting.

Figure: E-bola virus


Figure: E-bola virus
Influenza
Zika Viruses in the Orthomyxoviridae family are
Zika virus is one of the 53 different species of the enveloped and have single-stranded segmented RNA
Flaviviridae family in the Flavivirusgenus. It was first genomes. This family includes viruses that can be

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transmitted by respiration, direct contact, water, or viruses or bacterial infections resistant to antibiotics,
ticks. Orthomyxoviruses can cause infection in such as bacteriophages. Viruses can function like a
humans, birds, many mammal species, and fish. The small hand with which we can touch cells at the
most medically important viruses in this family are electron-microscope scale if used for good purposes;
the influenza virus species. These viruses (influenza conversely, they have been used maliciously in the
viruses A, B, and C) are associated with respiratory past by people who want to destroy humanity and are
tract infections that can lead to serious clinical likely to be so used in the future. In the future, viral
consequences in humans. Influenza viruses canlead to engineering studies may need to be subjected to
seasonal epidemics and sometimes pandemics worldwide inspection for reasons of of national and
(influenza A). Throughout history, influenza A global security.
pandemics have been blamed for the deaths of tens of
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