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  • Insulin Phyre-Rama

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    Amit kumar ganotra
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    The Ramachandran analysis of the insulin_phyre.pdb model found that 85.2% of residues were in favored regions and 94.4% were in allowed regions. There were 6 residues identified as outliers, including residues 33, 52, 54, 63, 66, and 69 with phi and psi angles outside of normal ranges. The analysis provides a graphical representation of amino acid residues in the model within common phi-psi dihedral angle plots used to assess protein structure quality.

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    The Ramachandran analysis of the insulin_phyre.pdb model found that 85.2% of residues were in favored regions and 94.4% were in allowed regions. There were 6 residues identified as outliers, including residues 33, 52, 54, 63, 66, and 69 with phi and psi angles outside of normal ranges. The analysis provides a graphical representation of amino acid residues in the model within common phi-psi dihedral angle plots used to assess protein structure quality.

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    8 views1 page

    Insulin Phyre-Rama

    Uploaded by

    Amit kumar ganotra
    The Ramachandran analysis of the insulin_phyre.pdb model found that 85.2% of residues were in favored regions and 94.4% were in allowed regions. There were 6 residues identified as outliers, including residues 33, 52, 54, 63, 66, and 69 with phi and psi angles outside of normal ranges. The analysis provides a graphical representation of amino acid residues in the model within common phi-psi dihedral angle plots used to assess protein structure quality.

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    MolProbity Ramachandran analysis

    insulin_phyre.pdb, model 1
    General case Isoleucine and valine
    180 180

    Psi Psi

    0 0

    -180 -180
    -180 0 Phi 180 -180 0 Phi 180

    Pre-proline Glycine
    180 180

    Psi Psi

    0 0

    -180 -180
    -180 0 Phi 180 -180 0 Phi 180

    Trans proline Cis proline


    180 180

    Psi Psi

    0 0

    -180 -180
    -180 0 Phi 180 -180 0 Phi 180

    85.2% (92/108) of all residues were in favored (98%) regions.


    94.4% (102/108) of all residues were in allowed (>99.8%) regions.

    There were 6 outliers (phi, psi):


    33 Ser (112.5, -95.8)
    52 Pro (-109.3, 137.7)
    54 Thr (-58.9, 91.2)
    63 Val (177.3, -138.1)
    66 Val (-142.4, -124.9)
    69 Gly (51.0, -103.3)

    http://kinemage.biochem.duke.edu Lovell, Davis, et al. Proteins 50:437 (2003)

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