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WK11 Cc-Lec
WK11 Cc-Lec
BASIC STRUCTURE
OUTLINE Elements:
PROTEINS o Carbon
I. OVERVIEW o Oxygen
1. Basic Structure o Hydrogen
2. General Chemical Properties o Nitrogen
3. Synthesis o Sulfur
4. Catabolism and Nitrogen Balance Proteins are polymers built from one or more unbranched
5. Classification chains of amino acids
6. Enzymes
o Typical: 200-300 amino acids
7. Hormones
8. Transport Proteins o Smaller: peptides
9. Immunoglobulins o Larger: titin
10. Structural Proteins Macromolecules
11. Storage Proteins o 6000 Daltons in mass (insulin)
12. Energy Source Primary structure
13. Osmotic Force o Represents the number and types of amino acids
in the specific amino acid sequence.
II. PLASMA PROTEINS
1. Prealbumin Secondary structure
2. Albumin o Commonly formed structures stabilized by
3. Globulins hydrogen bonds between the amino acids within
4. a1-Antirypsin the protein
5. a1-Fetoprotein a-helix
6. a1-Acid Glycoprotein b-pleated sheet
7. a1-Atichymotrypsin turns
8. Inter-a-Trypsin Inhibitor
9. Gc-Globulin
o Add strength and flexibility to proteins
10. Haptoglobin
11. Ceruloplasmin Figure No. 1 Secondary structure of protein
12. a2-Macroglobulin
13. Transferrin
14. Hemopexin
15. Lipoproteins
16. β2-Microglobulin
17. Fibrinogen
18. C-Reactive Protein
19. High-Sensitivity CRP
20. Immunoglobulins
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properties SYNTHESIS
Proteins can be positively or negatively charged Most plasma proteins are synthesized in the liver and
o Contain many ionizable groups on the side chains secreted by the hepatocyte into circulation
of their amino acids as well as on their N- and C- Immunoglobulins are an exception
terminal ends o Synthesized in plasma cells
Basic groups: The amino acid sequence of a polypeptide chain is
o Lysine determined by a corresponding sequence of bases
o Arginine (guanine, cytosine, adenine, and thymine) in the DNA
o Histidine contained in the specific gene
Acidic groups: Codons
o Glutamate o Set of 3 nucleotides (each standing for a specific
o Aspartic acid amino acid)
o Cysteine o Total number of possible codons: 64
o Tyrosine Transcription
The pH of the solution, the pKa of the side chain, and the o Formation of complementary strand of mRNA
side chain's environment influence the charge on each side o The mRNA is manufactured in the cell nucleus
chain and then translocated across the nuclear
Henderson-Hasselbalch equation: membrane into the cytoplasm for translation
o Describes the relationship between pH, pKa, and Translation
charge for amino acids o mRNA strand is used as a template for protein
synthesis by the ribosome
Figure No. 2 Henderson-Hasselbalch equation loaded onto ribosome
read 3 nucleotides at a time by matching
each codon to its base pairing anticodon
located on tRNA
o short-chain RNA that
As the pH of a solution increases, becoming more occurs freely in the
alkaline, deprotonation of the acidic and basic groups cytoplasm
occurs o Each amino acid has a specific tRNA that
o Carboxyl groups are converted to carboxylate contains three bases corresponding to the three
anions (R-COOH R-COO-) bases in the mRNA
o Ammonium groups are converted to amino o The tRNA carries its particular amino acid to the
groups (R-NH3+ R-NH2) ribosome and attaches to the mRNA in
Isoelectric point (pI) accordance with the matching codon
o pH at which amino acids have no net charge o Amino acids are aligned in sequence and joined
number of positively charged groups together
equals the number of negatively Protein synthesis occurs at a rate of approximately two to
charged groups six peptide bonds per second
o pH > pI = net negative charge Intracellular proteins
o pH < pI = net positive charge o Synthesized on free ribosomes
The net charge on the surface of a protein depends on the Proteins made by the liver for secretion
number and type of amino acids it contains as well as the o Synthesized on ribosomes attached on RER
pH of its environment Hormones (thyroxine, GH, insulin, and testosterone) may
Protein’s solubility assist in controlling protein synthesis
o Dependent on the charge on its surface
Hydrophilic Figure No. 3 Protein synthesis
There is a charge at the protein
surface
o Lowest solubility = pI
o Solubility of proteins in blood requires a pH of
7.35-7.45
Denaturation
o Loss of native/naturally occurring folded
structures in proteins
o Structure of proteins is disturbed
Loses its functional and chemical
characteristics
o Causes:
Heat
Hydrolysis (by strong acid/base)
Enzymatic action
Exposure to urea or other substances
Exposure to UV light
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Ketoacids
o Oxidized by means of
the citric acid cycle
o Converted into
glucose/fat
CLASSIFICATION
Proteins are commonly classified by the functions they
perform
ENZYMES
Proteins that catalyze biochemical reactions
Normally found intracellularly, but are release into the
bloodstream as a result of tissue damage
Examples commonly used in clinical laboratories to
evaluate tissue damage:
o Transaminases
o Dehydrogenases
o Phosphates
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o Albumin Albumin
o Globulin
o Albumin-to-globulin (A/G) ratio Is synthesized in the liver at a rate of 9 to 12 g/day and is
the most abundant protein in the plasma.
Also exists in the extravascular (interstitial) space.
The total amount of extravascular albumin exceeds the
total intravascular amount by about 30%; however, the
concentration of albumin in plasma (albumin mass/plasma
volume) is much greater than its concentration in the
interstitial space.
Leaves the bloodstream at a rate of 4% to 5% of the total
intravascular albumin concentration per hour. This rate of
movement is known as the transcapillary escape rate,
which measures systemic capillary efflux of albumin.
Is responsible for nearly 80% of the colloid osmotic
pressure (COP) of the intravascular fluid, which maintains
the appropriate fluid balance in the tissue.
Albumin also buffers pH and is a negative acute-phase
reactant protein.
A primary function of albumin is its capacity to bind and
transport various substances in the blood.
Albumin is involved in the transport of thyroid hormones,
unconjugated bilirubin, fat-soluble hormones, iron, fatty
acids, calcium (Ca 2+), magnesium (Mg 2+, and many
drugs such as salicylic acid (aspirin).
Also binds certain dyes, which is the basis for many of the
methods used for quantitation of albumin.
Several recent studies have focused on the clinical
applications of glycated (or glycosylated) albumin as a
more sensitive indicator of short-term hyperglycemic
control than glycated hemoglobin.
Glycated hemoglobin represents trends in blood glucose
over a period of 3 months or approximately 120 days,
which is the life span of red blood cells.
As the half-life of serum albumin is 20 days, glycated
albumin represents serum glucose patterns approximating
1 month.
Decreased blood concentrations of albumin are most
commonly associated with an acute inflammatory
response as albumin is a negative acute-phase reactant.
Prealbumin / Transthyretin Liver and kidney disease may also result in low blood
It migrates before albumin in classic serum protein albumin concentrations.
electrophoresis (SPE). Albumin is normally excreted in very small amounts by the
Can also be separated using high resolution kidneys; however, increased renal loss of albumin
electrophoresis (HRE) or immunoelectrophoresis commonly occurs in renal disease.
techniques. o This increased excretion occurs when the
It is a transport protein for the thyroid hormones, thyroxine glomerulus no longer restricts the passage of
(T4), and triiodothyronine (T3). proteins from the blood into the ultrafiltrate as
Forms a complex with retinol-binding protein to transport occurs in nephrotic syndrome.
retinol (vitamin A) and is rich in the amino acid tryptophan. Low albumin concentrations may also be the result of
A low prealbumin may also indicate poor nutritional status. malnutrition and malabsorption in which an inadequate
Diets deficient in protein may not provide sufficient amino ingestion of proteins or amino acid-rich foods results in
acids for adequate protein synthesis by the liver resulting decreased protein synthesis by the liver.
in decreased plasma concentrations of prealbumin, Less commonly, low blood albumin concentrations occur
albumin, and β-globulins. as a result of hypothyroidism, burns or exfoliative
Has a half-life of approximately 2 days, so blood dermatitis, dilution by excessive intake (polydipsia),
concentrations of prealbumin decrease faster than do orinfusion of liquids (intravenously).
those of other proteins with a longer half-life when protein Albumin may be redistributed by hemodilution, increased
synthesis is inhibited. capillary permeability, or decreased lymph clearance
Blood concentrations of prealbumin may be increased in Mutations resulting from an autosomal recessive trait can
patients receiving steroid therapy, who have issues with cause an absence of albumin, known as analbuminemia,
alcohol abuse, or who are in chronic renal failure. or presence of albumin that has unusual molecular
characteristics, which is referred to as bisalbuminemia.
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Haptoglobin
Haptoglobin (Hp)
o α2 -glycoprotein synthesized in the liver Ceruloplasmin
o a tetramer consisting of two α and two β chains. Ceruloplasmin
o a positive acute-phase protein that increases in o Copper-containing, α2 -glycoprotein enzyme
many inflammatory diseases: o synthesized in the liver
Such as: ulcerative colitis, acute o A positive acute-phase reactant and ↑ during
rheumatic disease, acute myocardial inflammation, severe infection, and tissue
infarction, and severe infection. damage and cancers.
Or in conditions such as burns and o May also be ↑ during pregnancy and those who
nephrotic syndrome when large takes estrogen, oral contraceptives, and
amounts of fluid and lower-molecular- carbamazepine, phenobarbital, and valproic
weight proteins are lost acid.
o haptoglobin are not generally used to diagnose o 90% or more of total serum copper is bound to
or monitor either of these conditions. ceruloplasmin – 10% bound to albumin.
Its main function is to bind free Ceruloplasmin, blood and urine copper tests is used to
hemoglobin to prevent the loss of its aid in the diagnosis of Wilson's disease.
constituent, iron, into the urine. o Wilson's is an autosomal recessive inherited
“When haptoglobin and hemoglobin disorder associated with decreased
attach, the reticuloendothelial cells, concentrations of ceruloplasmin,
predominantly in the spleen, remove Typically 0.1 g/L, and excess storage of
the haptoglobin–hemoglobin complex copper in the liver, brain, and other
from circulation so the hemoglobin organs, which results in hepatic
constituents, iron and amino acids, can cirrhosis and neurologic damage.
be recycled and haptoglobin is o In Wilson's disease, the total serum copper
destroyed”. concentration is decreased, but the urinary
It is primarily used to evaluate possible hemolytic anemia excretion of copper is increased.
and to distinguish it from anemias due to other causes. o Copper is also deposited in the cornea,
o Patients usually have an increased reticulocyte producing the characteristic Kayser-Fleischer
count, decreased red blood cell count, rings.
decreased hemoglobin, and decreased o Low ceruloplasmin is also seen in malnutrition,
hematocrit. malabsorption, severe liver disease, nephrotic
o Patients with a hemolytic anemia syndrome, and Menkes' syndrome, in which a
Also have a decreased haptoglobin decreased absorption of copper results in a
(due to its destruction by the decrease in ceruloplasmin and distinctive “kinky
reticuloendothelial system) hair.”
If the haptoglobin is normal and the Early analytic method of ceruloplasmin is based
reticulocyte count is ↑, it is likely the on its copper oxidase activity, can be detected
anemia is due to destruction of red through immunochemical methods, radial
bloods in organs such as the spleen immunodiffusion and nephelometry.
and liver.
o If the haptoglobin concentration and the a2-Macroglobulin
reticulocyte count are within the normal, it is α2-Macroglobulin
likely the anemia is not due to red blood cell o A tetramer of four identical subunits
breakdown. o Synthesized by the liver
o If haptoglobin concentrations are decreased o A major component of the α2 band in protein
without any sign of hemolytic anemia, it is electrophoresis.
possible the liver is not producing adequate o It inhibits proteases such as trypsin, thrombin,
amounts of haptoglobin. kallikrein, and plasmin by means of a bait region
An individual's haptoglobin phenotype has been reported that entraps proteinases.
as an independent risk factor for cardiovascular disease Entrapment reduces the accessibility of
(CVD) in patients with type 2 diabetes mellitus. the proteinase functional sites (mostly
Three phenotypes of haptoglobin are found in humans: seen in large molecules, but it does not
o Hp1-1, Hp2- 1, and Hp2-2. completely inactivate them).
Homozygous Hp1-1 yields one band After binding with and inhibiting
during electrophoresis. Peptide chains proteases, α2 -macroglobulin is
form polymers with each other and with removed by the reticuloendothelial
haptoglobin 1 chains to provide the system.
other two electrophoretic patterns, In nephrosis
which have been designated as Hp2-1 o Concentrations of serum α2 -macroglobulin may
and Hp2-2 phenotypes. due to its large size that inhibits filtration at the
Radial immunodiffusion and immunonephelometric renal glomeruli, making α2 -macroglobulin useful
methods have been used for the quantitative in evaluation of renal disease.
determination of haptoglobin.
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o ↑ Concentrations may also be seen in patients This disease can be effectively treated
with diabetes or liver disease and patients using by plasma infusions of transferrin
contraceptive. Analytic methods used for the quantitation-
o During pregnancy, serum α2 -macroglobulin immunodiffusion and immunonephelometry.
concentrations may ↑ by 20%. Total iron-binding capacity (TIBC) is typically measured
Analytic methods- radial immunodiffusion, along with serum iron to evaluate either iron deficiency or
immunonephelometry, enzyme-linked iron overload.
immunosorbent assay (ELISA), and latex The iron concentration divided by TIBC gives the
agglutination immunoassay. transferrin saturation, which is a more useful indicator of
iron status than iron or TIBC alone.
Transferrin In iron deficiency, total serum iron is low, but TIBC is
Transferrin siderophilin increased, and transferrin saturation becomes very low.
o A negative acute-phase glycoprotein In iron overload, total serum iron is high and TIBC is low
o Synthesized by the liver. or normal, causing transferrin saturation to increase. It is
o A major component of the β-globulin fraction on customary to test for transferrin, rather than TIBC, when
protein electrophoresis evaluating nutritional status or liver function.
o Also plays an important role in the transport of
iron. LIPOPROTEINS
o Transferrin binds and transports iron to its complexes of proteins and lipids. Function is to transport
storage sites cholesterol, triglycerides, and phospholipids in the
Liver, where it is incorporated into bloodstream.
apoferritin, another protein, to form subclassified according to their apolipoprotein and lipid
ferritin. content.
o Transferrin also carries iron to the bone marrow o chylomicrons, very-low-density lipoproteins
And synthesizes hemoglobin and other (VLDL)
iron-containing compounds. o intermediate-density lipoproteins (IDL)
Iron bound to transferrin= less than o low-density lipoproteins (LDL)
0.1% (4 mg) of the total body iron, o high-density lipoproteins (HDL).
most important iron pool. β2-MICROGLOBULIN
Transferrin also prevents iron from light chain component of the major histocompatibility
being inappropriately deposited in complex or human leukocyte antigen (HLA).
tissues during temporary increases in found on the surface of most nucleated cells and is present
absorbed iron or free iron. in high concentrations on lymphocytes.
filtered by the renal glomerulus, but is almost completely
o Transferrin are routinely measured to determine the reabsorbed and catabolized in the proximal tubules.
cause of anemia seen on high-resolution electrophoresis, but because of its
o To gauge iron metabolism, and to determine the low concentration, it is usually measured by immunoassay
iron-carrying capacity of the blood.
Elevated serum levels:
o In iron deficiency anemia, transferrin
o result of impaired clearance by the kidney or
concentrations are abnormally ↑ works as a
overproduction of the protein that occurs in a
compensation mechanism.
number of inflammatory diseases: rheumatoid
o While low transferrin can impair hemoglobin production
arthritis and systemic lupus erythematosus
and lead to anemia.
(SLE)
o A deficiency of plasma transferrin may also
o In patients with HIV, a high B2M level in the
result in the inappropriate accumulation and
absence of renal failure indicates a large
precipitation of iron in tissues as hemosiderin.
lymphocyte turnover rate, suggesting the virus is
o A ↑ of iron bound to transferrin is found on
killing lymphocytes.
hemochromatosis
Excess iron is deposited in the tissue, COMPLEMENT
especially the liver and the pancreas. synthesized in the liver as single polypeptide chains and
Characterized by having bronze skin, circulate in the blood as nonfunctional precursors.
cirrhosis, diabetes mellitus, and low COMPLEMEN C3
plasma transferrin levels. o most abundant complement protein in the human
o Transferrin is low in liver disease or when there is not serum.
enough protein in the diet. o important in the pathogenesis of age-related
o A decreased transferrin concentration can also be due to macular degeneration, and this finding further
excessive loss through the kidneys in protein losing underscores the influence of the complement
disorders such as nephrotic syndrome. Can also be seen pathway in the pathogenesis of this disease.
during infection, inflammation, and malignancy. o used as a screening test because of its pivotal
position in both the classic and alternative
o Atransferrinemia- Inherited autosomal recessive trait due pathway.
to mutation of both transferrin genes. Characterized by COMPLEMEN C4
anemia and iron deposition (hemosiderosis) in the liver o second most abundant.
and heart and damage to the heart can lead to heart CLASSIC PATHWAY
failure. o activation of these proteins begins when the first
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complement factor, C1q, binds to an antigen– one of the first acute-phase proteins to rise in response to
antibody complex. inflammatory disease.
o each complement protein (C2–C9) is then rises sharply whenever there is tissue inflammation.
activated sequentially and can bind to the INFLAMMATION
membrane of the cell to which the antigen– o has been demonstrated through many studies to
antibody complex is bound, leading to lysis of the be important in the development of
cell. atherosclerosis, which is the fatty deposit that
PROPERDIN PATHWAY accumulates in the inner lining of arteries
o alternate pathway for complement activation. ATHEROSCLEROSIS
o early components are bypassed and the process o disease of lipid accumulation
begins with C3. o represents a chronic inflammatory process
o triggered by different substances and does not causing an elevated CRP
require the presence of an antibody; Major factors that promote atherosclerosis: cigarette
Increased levels of both C3 and C4 smoking, hypertension, plaque causing lipoproteins, and
o linked to acute inflammatory disease and tissue hyperglycemia.
inflammation. Elevated levels of CRP
Decreased levels of C3 o stimulate the production of tissue factor, which
o associated with autoimmune disease, neonatal initiates coagulation, activates complement, and
respiratory distress syndrome, bacteremia, tissue binds to LDL in the atherosclerotic plaque.
injury, and chronic hepatitis. o CRP concentrations are measured during the
Decreased levels of C4 evaluation of arteriosclerosis and risk for
o seen in disseminated intravascular coagulation cardiovascular disease.
(DIC), acute glomerulonephritis, chronic hepatitis, Reduced CRP levels
and SLE. o weight loss, diet, exercise, and smoking cessation
C3 and C4 are the most commonly measured in the and administration of pharmacologic agents such
clinical laboratory. C3 concentrations, however, are not as statins.
the most sensitive indicator of classic pathway activation individuals with CRP levels greater than 3 mg/L have four
and a decreased complement C4 concentration is to six times greater risk for development of diabetes than
frequently found to be a more sensitive measure of individuals with lower levels of CRP.
mild classic pathway activation. result above 1 mg/dL is usually considered high for CRP,
Methods for measuring complement include nephelometric and most infections and inflammations result in CRP levels
immunoassay and turbidimetry. above 10 mg/dL.
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and cardiac muscle, accounting for approximately 2% of represents a complex of regulatory proteins:
total muscle protein. o troponin C (TnC)
most myoglobin found in cells is dissolved in the o troponin I (cTnI)
cytoplasm. o troponin T (cTnT)
can reversibly bind oxygen similarly to the hemoglobin specific to cardiac muscle
molecule, but myoglobin requires a very low oxygen “gold standard” for diagnosis of acute coronary
tension to release the bound oxygen. syndrome (ACS)
as a cardiac biomarker, myoglobin has been used in o blood supply to the heart muscle is suddenly
conjunction with troponin to help diagnose or rule out an impeded
acute myocardial infarction, or heart attack have specificity for myocardial damage
when striated muscle is damaged, myoglobin is released MYOCARDIAL INJURY
into the bloodstream resulting in elevated blood o An indicative when a single blood cTn measures
concentrations above the decision limit
following an acute myocardial infarction, blood American College of Cardiology and the European
concentrations of myoglobin elevate within 2 to 3 hours and Society of Cardiology with the National Academy of
reach peak concentrations within 8 to 12 hours. Clinical Biochemistry
CAUSES OF MYOGLOBIN ELEVATION o Recommend to use a decision limit for myocardial
o Acute myocardial infarction injury at the 99th percentile of the reference
o Angina without infarction population for cTnT and cTnI
o Rhabdomyolysis Laboratory should define its own cutoff value based
o Muscle trauma on its reference population and not exceed a total
o Renal failure imprecision of 10% at the diagnostic cutoff
o Myopathies BELOW 10 ng/mL & MAY RISE TENFOLD FOLLOWING
o Vigrorous exercise AN AMI
o Intramascular injections o Normal blood concentrations of cTnI
o Open heart surgery cTn
o Seizures(tonic-clonic) o may be ordered by itself;
o Electric shock o or in conjunction with other cardiac biomarkers:
o Arterial thrombosis creatine kinase (CK)
o Certain Toxins CK-MB
Myoglobin
most commonly used in the clinical laboratory for cTnI and cTnT tests
myoglobin measurement o quickly replacing total CK and CK-MB
o Latex agglutination measurements
o ELISA o they are more specific to cardiac tissue and
o Immunonephelometry remain elevated in circulation for a longer period
o ECLIA of time
o Fluoroimmunoassays blood concentrations of cardiac troponins
qualitative spot test using immunochromatography is also o elevate: 3 to 12 hours of onset
available. o reach peak concentrations: 12 to 24 hours
o remain elevated: 1 to 3 weeks
Table No. 11.4 Causes of Myoglobin Elevations damage to the heart was minor or that the injury took place
Acute myocardial infarction more than 24 hours in the past
Angina without infarction o CK, CK-MB, myoglobin concentrations: normal
Rhabdomyolysis o Troponin: elevated
Muscle trauma damage to the heart likely occurred a couple of hours prior
Renal failure to the initial specimen collection and blood concentrations
Myopathies had not yet significantly elevated
Vigorous exercise o initial troponin measurement: within the
Intramuscular injections reference interval
Open heary surgery o subsequent (6- and 12-hour specimens)
troponin results: elevated
Seizures (tonic-clonic)
symptoms are present like skeletal muscle injury
Electric shock
o CK: elevated
Arterial thrombosis
o Troponin: within the reference interval
Certain toxins
Measured using: ELISA / immunoenzymometric assays
Latex agglutination, ELISA, immunonephelometry, o using two monoclonal antibodies directed
ECLIA, and fluoroimmunoassays against different epitopes or;
o most commonly used in the clinical laboratory for o antigenic determinants
myoglobin measurement
IMMUNOCHROMATOGRAPHY
BRAIN NATRIUPETIC PEPTIDE AND N-TERMINAL-
o qualitative spot test
BRAIN NATRIUPETIC PEPTIDE
NATRIUPETIC PEPTIDES
CARDIAC TROPONIN (cTn)
o family of structurally related hormones:
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CYSTATIN C CONCENTRATIONS
o not affected by muscle mass, gender, age, or race
nor are they generally affected by most drugs,
infections, diet, or inflammation
o Measured using: particle-enhanced
immunoturbidimetric or
immunonephelometric methods
CREATININE CLEARANCE TESTING
o to screen for and monitor kidney dysfunction
AMYLOID
insoluble fibrous protein aggregates formed due to an
alteration in their secondary structure (β-pleated sheets)
AMYLOIDOSIS
o amyloids are abnormally deposited in organs and
tissues (heart and blood vessels, brain and
peripheral nerves, kidneys, liver, spleen, and
intestines)
o causing localized or widespread organ failure
o inherited secondary to diseases that cause
overabundant or abnormal protein production,
such as:
chronic infections, malignancies,
rheumatologic disorders
Amyloid β42 (Aβ42) & Tau protein tests- not routinely
performed
o may be used to aid in the differential diagnosis of
Alzheimer's disease from other forms of dementia
o performed primarily in research settings on
cerebrospinal fluid
BRAIN PHOSPHOPROTEIN
o Abnormal forms of Tau
o make up part of the structure of neurofibrillary
tangles (twisted protein fragments that clog nerve
cells)
Aβ42- formed from β amyloid precursor protein,
o associated with the creation of senile plaques
SYMPTOMATIC PATIENT:
o low Aβ42 concentration
o elevated Tau concentration
indicates an increased likelihood of
developing Alzheimer's disease, but it
does not mean the patient will absolutely
develop Alzheimer's
o normal levels of Aβ42 and Tau proteins
the cause of dementia is not likely to be
related to Alzheimer's disease
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