Professional Documents
Culture Documents
Zainab Muhammad T.R
Zainab Muhammad T.R
ON
UNDERTAKEN AT
BY
SUBMITTED TO
DEPARTMENT OF MICROBIOLOGY BAUCHI STATE
UNIVERSITY,GADAU BAUCHI STATE
_____________________________ _____________________________
Student’s Signature Supervisor’s Signature
i
DEDICATION
This report is dedicated to the almighty God, the giver and sustainer of life, for
His unconditional love and mercy granted to me throughout the period of my
Industrial Training.
ii
ACKNOWLEDGEMENTS
I give thanks to Almighty God, who gave me the gift of life, and made
everything possible.
iii
REPORT OVERVIEW
This report highlights how patients are being managed and also the
several test carried out for patients such as: Full Blood Count (FBC), Packed
Cell Volume(PCV),White Blood Cell Count, Differential Count, Stool
Examination, Widal (Typhoid test), Genotype, HIV, e.t.c. I was opportuned to
work in five (4) sections which are Hematology/Immunohematology Section,
Serology Section, Clinical Microbiology Section, and Chemical Pathology
Section. These sections have exposed me to the precautions, rules and
regulations of the laboratory, how to diagnose patients and how the tests are
being analysed.
iv
TABLE OF CONTENTS
Title page
Certification …………………………………………………………................. i
Dedication ……………………………………………………………………… ii
CHAPTER ONE
1.0 About the Industrial Training Fund (I.T.F)…………………………… 1-3
1.1 About SIWES (Student Industrial Training Fund)………………… 1
1.2 Scope……………………………………………………………….. 1-2
1.3 Aim and Objective of S.I.W.E.S…………………………………… 2-3
1.4 Brief History Of General Hospital Azare…………2-3
CHAPTER TWO
2.0 The Laboratory…………………………………………………………... 4-6
2.1 Introduction to the Laboratory…………………………………….... 4-5
2.2 Safety Rules in the Laboratory……………………………………… 5
2.3 Emergency in the Laboratory……………………………………….. 5
2.4 Hazardous Materials………………………………………………… 5
2.5 Hazardous Equipments…………………………………………...…. 5
2.6 Laboratory Equipments and their Uses……………………………… 5-6
CHAPTER THREE
3.0 The Laboratory Sections and Various Tests Performed……………….. 7-28
3.1 Hematology and Immunohematolgy (Blood Bank) Sectio……… 12-16
3.2 Serology Section ………………………………………………….…. 17-19
3.3 Clinical Biochemistry Section …………………………………….… 19-22
3.4 Clinical Microbiology Section………………………………….……. 22-28
3.5 Microscopy, Culture and Sensitivity Tests …………………….…….. 28
CHAPTER FOUR
4.0 Summary, Challenges Encountered, Recommendation and
Conclusion………………………………………………………………..…. 29
4.1 Summary……………………………………………………….……... 29
4.2 Challenges Encountered ……………………………………………… 29
4.3 Conclusion ………………………………………………………….… 29
4.4 Recommendation …………………………………………………...… 29
CHAPTER ONE
1.2 SCOPE
The scheme as conducted by the Industrial Training Fund (I.T.F) through their
representative liaison units and offices situated within the various institution and in major
cities or towns in Nigeria with the necessary industrial rudiments needed to corroborate,
practicalize and then actualize the required technical knowledge. The Industrial Training
experience not only puts them in real life situations buts also exposes their practical
knowledge of the course of study, consequently perfecting this knowledge thereby
producing very competent and versatile professionals.
Azare is located at south east of Katagum local government, Bauchi state, with existence of
various unit, which are as follows: Administration block, Maternity ward, Laboratory
department, Theatre, Eye clinic, Health office, Pharmacy, A&E (Accident & Emergency),
pediatric ward, male and female wards etc. Each ward consists of bedside rows and they have
The SIWES programmed was conducted at General Hospital Azare (GHA) which is a government
establishment with a laboratories scientist work. The programmed has lasted for the period of 24
weeks. The aim of this report is to summarize the various activities, test/investigation that has
been carried out at laboratory department of General Hospital Azare Bauchi state.
CHAPTER TWO
There are three sections in the laboratory, they are; Clinical Microbiology section,
Hematology/Serology section, and Clinical Biochemistry section. The overall significance
of the laboratory diagnosis is that they guide towards the administration most effective
therapy so as to restore a proper health on the patient. Laboratory safety precautions and
ethics
Avoid disrupting laboratory activities you must TURN OFF all cell phones and pagers:
their use is prohibited.
All persons in laboratories, including students, staff, and visitors, shall wear safety
glasses, goggles, or face shields at all times where potential eye hazards exist
Eating, drinking, chewing gum, and applying cosmetics are prohibited laboratory.
Do not store food or beverages in the same refrigerators or freezers with chemicals,
biohazards, or radioactive materials.
Never conduct unauthorized experiments or engage in horseplay in a laboratory. Please
immediately report any unsafe behaviour to the instructor.
Wear appropriate clothing. In particular, you must wear closed-toed shoes (i.e., NO
sandals or flip-flops!) in the laboratory. If you have a long hair, tie it back. Avoid
wearing dangling jewellery.
Wearing an iPod, Bluetooth, or any other device that interferes with hearing is not
allowed.
Never pipette anything by mouth.
The work area must be kept clean and uncluttered. All chemicals should be labelled and
stored properly.
The hazards of chemicals used should be known (e.g., corrosiveness, flammability,
reactivity, stability, and toxicity).
Always pay attention to your surroundings and be aware of what others are doing.
Always be courteous.
Remove contaminated gloves before touching common use devices (door knobs,
faucets, equipment); discard gloves before leaving the laboratory.
Always wash hands and arms with antibacterial soap and water before leaving the
laboratory.
Microscope: Is used to examine samples and to analyze their contents that are not
visible to the naked eye. It is used to count pathogen and other cells and to view under
x10, x40, and x100 objectives.
Centrifuge: Is used for spinning specimen e.g. urine to enable separation into
constituents or components e.g. blood into serum and plasma.
Wire loop: It is used for streaking specimen on culture plates and it can also be used for
making smear of samples on slides.
Lancet: It is a sterile needle used to prick the thumb for the collection of blood
samples.
Capillary tube: It is used for the collection of blood samples to determine the packed
cell volume.
Universal bottle: used for sample collection e.g. urine, stool, semen
Glass slide: It is used for the preparation of samples to be viewed directly under the
microscope.
Sterile swab stick: Is used for the collection of samples to directly from the sight of
infection e.g. Ear, nose, vagina, cervix, etc.
Sampling bottles: They are bottles used for the collection of blood samples e.g.
universal bottle, fluoride oxalate bottle, Ethylene-Di-amine-Tetra acetic Acid bottle
(EDTA), Lithium Heparin bottle, plain bottle.
Micro heamatocrit centrifuge machine: it is used to spin sample for the analysis of
packed cell volume of blood sample.
Micro haematocrit reader: used to read the packed cell volume in percentage.
Macro centrifuge machine: It is used for the separation of blood samples in order to
get the plasma and also used for the separation of urine sample so as to get the
supernatant and the specimen
Glucometer: used to check for the sugar level in the body with the aid of its strip.
Hematology analyzer: Is used for the analysis of Full Blood Count (FBC).
CHAPTER THREE
In hematology section, the analysis is carried out using the whole blood sample of patient
for diagnosis of hematological diseases and abnormalities. Blood samples are collected in
EDTA bottle for analysis.
Immunohematology Section Also known as the blood bank performs tests to provide
blood and blood products to patients for transfusion purposes. The blood bank
technologist relies on the phlebotomist to perform identification of the patient without
error, since patients will die if given the wrong blood type. The analyses carried out in
these sections include: Packed cell volume, Full blood count, Erythrocyte sedimentation
rate (ESR), Blood film for microfilaria and ABO/D (Rh) typing, Antigen typing, Blood
grouping, Cross matching, respectively.
Introduction: The complete blood count of a blood sample helps to know the total cell
in the whole blood. It determines the total haematocrit (HCT), hemoglobin (HGB), red
blood cell (RBC) count, white blood cell (WBC) count, platelet count, mean
corpuscular hemoglobin (MCH), mean corpuscular hemoglobin concentration (MCHC),
mean corpuscular volume (MCV), differential (DIFF)-done on a blood smear
Conclusion: The count of platelet, white blood cell and differentials, haemoglobin,
granulocyte and all other cells in the blood samples was determined
Conclusion:
Factors affecting the accuracy of PCV are; Unsteady power supply, Poor blood sample
collection, Parallax error while reading the result on the haematocrit reader, Incorrect
blood to anticoagulant ratio, Over spinning of the blood in the centrifuge, Lysing of the
blood by flame or delay in spinning
Conclusion: The ESR test does not diagnose a particular kind of infection but rather tell
if further medication should be given. It is usually done to indicate if there are abnormal
proteins in the body
3.2.5 BLOOD GROUPING AND GENOTYPING TEST
Introduction: Blood grouping of the A B O system is determined with Anti-A, Anti-B,
and Anti-D sera, which form agglutination complex with antibodies found in the blood
sample.
Equipments/Materials: Clean free grease tile, Pasteur pipette, Whole blood sample in
an EDTA bottle, distilled water, applicator stick, test tube rack, electrophoresis machine
and tank, clean white tile, cotton wool, applicator stick, cellulose filter paper, gloves.
Reagents: Anti-A, Anti-B, Anti-D sera, Buffer for balancing, normal saline
Procedure:
For blood Grouping: The blood sample was collected into an EDTA bottle through
venipuncture. 10ul of blood was placed 3 spots on the tile with the aid of Pasteur
pipette. The antisera A, B and D were placed carefully on each spots, ABO of the
grouping system on the tile respectively and an applicator stick was used to thoroughly
mix the drop of blood with the anti-sera one after the other without contamination. The
tile was gently rocked from side to side for 3 minutes to allow agglutination occurrence,
then result was observed.
For Genotyping: Cells were washed two to three times in a test tube containing normal
saline after which, a drop of washed cells were placed on a tile. This is followed by the
hemolysis of blood on the tile and the placement of AS and AA control using applicator
stick, after making sure that the buffer inside the electrophoresis tank covered the
electrode, the cellulose paper was placed on the tank, which is then covered and mains
(current) switched on. Reading was recorded after 5-10mins
Result: The result for blood genotype was taken by studying the movement and
separation of hemoglobin molecule.
Conclusion: The result was observed according to the agglutination that occurred in
each spots on the tile. Anti D determines the present of the rhesus ‘D’ factor in blood
group.
Factors that affect blood grouping are; wrong labeling of spot and confusion of anti-
sera with spots, Contamination of test card or tiles with detergents, Expired anti-sera
Bio-medical significance; Blood transfusion, Blood compatibility, Antenatal
screening#
Result: The appearance of a line at the Control region and another at the Test region
indicates a Positive result, while the appearance of a line on the Control region only,
and indicates a Negative result.
3.4 CLINICAL BIOCHEMISTRY SECTION
This section deals with chemical analysis of serum or plasma in which many diseases of
the major organs systems can be diagnosed such as heart attacks, hepatitis, renal failure,
diabetes, Liver function, etc Blood sample samples may collected into the Serum Separator
Tube or Lithium Heparin. Test performed in this department are:
Blood Glucose; FBS, FBS2HPP, RBS, OGTT
Blood lipids (fat) Cholesterol level.
Electrolytes - sodium, potassium, CO2- (Bicarbonate), and chloride
Uric acid
Creatinine and Blood Urea Nitrogen (BUN)
Liver function tests -AST, ALT, alkaline phosphatase, and bilirubin.
3.4.1 MATERIALS AND EQUIPMENTS USED IN CLINICAL BIOCHEMISTRY
SECTION
Personal Protective Equipments (PPE), Blood collection materials Different tubes like;
Lithium Heparin, Serum Separator and Fluoride Oxalate tubes, Chemical reagents and
detergents, automated machines, centrifuge, Glucometer and Accu check.
1. Fasting blood sugar (FBS) measures blood glucose after you have not eaten for at least 8
hours and at most 14 hours. It is often the first test done to check for prediabetes and
diabetes Materials/Reagents: Fluoride Oxalate and other blood collection equipments,
Centrifuge, Insulin kit (NORUDIA® Insulin) Liquid reagent, automated machine,
Glucometer or Accu Check.
Procedure: Patients is ensured to have fasted for the required period of time before
sample collection into a Fluoride Oxalate tube, and then the blood samples are centrifuged
in order to obtain plasma. The plasma obtained was decanted into a small cap which is
then transported into the machine for analysis. The results are then deduced which is
measured in mg/dl
Normal Result: Normal result is less than or equal to 100mg/dl
2. 2-hours post-prandial blood sugar measures blood glucose exactly 2 hours after you
start eating a meal. This is not a test used to diagnose diabetes.
Procedure: After performing the same procedure for FBS sample collection, patients are
then asked to return 2hrs as soon as they start eating, then another venepucture is made and
the same procedure is repeated.
Result: Normal results is less than 140mg/dl for people age 50 and younger; less than
150mg/dl for age 50-60; less than 160mg/dl for age 60 and older.
3. Random blood sugar (RBS) also known as casual blood glucose test. RBS measures
Blood glucose regardless of when you last ate. Several random measurements may be
taken throughout the day. Random testing is useful because glucose levels in healthy
people do not vary widely throughout the day. Blood glucose levels that vary widely may
mean a problem.
Materials/Reagents: Same materials as FBS.
Procedure: Glucometer or Accu Check are mostly used to perform this test. The
Glucometer corresponding code strip is inserted and loaded, Patient’s thumb is disinfected
using a70% alcohol pad and pricked with lancet. The blood is wiped off in order to avoid
sampling error, pressure is applied below to enable blood flow again and the blood is
placed on the strip. The result is then taken
Normal Results: 80-120mg/dl before meals and 100/140mg/dl after meals
4. Oral glucose tolerance test is used to diagnose prediabetes and diabetes. This test is a
series of blood glucose measurements taken after you drink a sweet liquid that contains
glucose. This test is commonly used to diagnose diabetes that occurs during pregnancy
(gestational diabetes). This test is not commonly used to diagnose diabetes in a person who
is not pregnant.
Materials/Reagents: : Fluoride Oxalate and other blood collection equipments,
Centrifuge, Insulin kit (NORUDIA® Insulin) Liquid reagent, automated machine, glucose
solution
Procedure: Patient is asked to take the required gram of sugar solution before sample
collection. Samples are collected five times at 30min intervals and lastly collected once
1hr after the last sample collection of 30min intervals. The result is the deduced by the
machines.
Results: 75g of glucose; fasting 92mg/dl or more; 1hr 180mg/dl or more; 2hrs 153mg/dl
or more
100g of glucose; more than or equal to 140mg/dl
5. Haemoglobin A1c (also called glycated haemoglobin) measures how much sugar
(glucose) is stuck to red blood cells. This test can be used to diagnose diabetes. It also
shows how well your diabetes has been controlled in the last 2 to 3 months and whether
your diabetes medicine needs to be changed.
Materials/Reagents: : Fluoride Oxalate and other blood collection equipments,
Centrifuge, Glycohemoglobin kit (NORUDIA® HbA1c) , automated machine, glucose
solution
Procedure: Same procedure as FBS
Result: The result of your A1c test can be used to estimate your average blood sugar level.
This is called your estimated average glucose, or eAG which ranges: (126, 154, 183, 212,
240, and 289) mg/dl
2. Enriched Media. The media are enriched usually by adding blood, serum or egg.
Examples: Enriched media are blood agar and Lowenstein-Jensen media. Streptococci
grow in blood agar media.
3. Selective Media. These media favour the growth of a particular bacterium by inhibiting
the growth of undesired bacteria and allowing growth of desirable bacteria. Examples:
MacConkey agar, Lowenstein-Jensen media, tellurite media (Tellurite inhibits the growth
of most of the throat organisms except diphtheria bacilli). Antibiotic may be added to a
medium for inhibition.
5. Transport Media. These media are used when specie-men cannot be cultured soon
after collection. Examples: Cary-Blair medium, Amies medium, Stuart medium.
6. Storage Media. Media used for storing the bacteria for a long period of time. Examples:
Egg saline medium, chalk cooked meat broth. The survival and growth of microorganisms
depend on available and a favorable condition environment. Culture media are nutrient
solutions used in laboratories to grow microorganisms. The method for the preparation of
basic microbiology media is given below. Sterilization is at 121c for 15minutes.pH values
are 7.0 unless stated otherwise.
2. MacConkey Agar. Most commonly used for enterobac teriaceae. It contains agar,
peptone, sodium chloride, bile salt, lactose and neutral red. It is a selective and indicator
medium:
a) Selective: as bile salt does not inhibit the growth of enterobactericeae but inhibits
growth of many other bacteria.
b) Indicator: medium as the colonies of bacteria that ferment lactose take a pink colour
due to production of acid. Acid turns the indicator neutral red to pink. These bacteria
are called 'lactose fermenter', e.g. Escherichia coll. Colourless colony indicates that
lactose is not fermented, i.e. the bacterium is non-lactose fermenter, e.g. Salmonella.
Shigella, Vibrio.
Preparation: 50g of the Agar was suspended and measured into one liter of purified
water and mixed thoroughly and was heated with frequent agitation, then boiled for
one minute to completely dissolve the powder. The Agar was autoclaved at 121 OC for
15minutes.
3. Chocolate Agar or Heated Blood agar. Prepared by heating blood agar. It is used for
culture of pneumococcus, gonococcus, meningococcus and Haemophilus. Heating the
blood inactivates inhibitor of growths.
Preparation: 2litres of distilled water was added to 144g of agar powder. Autoclaving
was done at 121OC for 15minutes and cooled till 45OC then 5% of defribrinated blood was
added. Heated slowly and evenly to 65OC, cooled till 45OC and poured into plates
4. Blood Agar. Most commonly used medium. 5-10% defibrinated sheep blood is added to
melted agar at 45-50°C. Blood acts as an enrichment material and also as an indicator.
Certain bacteria when grown in blood agar produce haemolysis around their colonies.
Certain bacteria produce no haemolysis. Types of changes:
(a) Beta ( β ) haemolysis. The colony is surrounded by a clear zone of complete
haemolysis, e.g. Streptococcus pyogenes is a beta haemolytic Streptococci.
(b) Alpha (α ) haemolysis. The colony is surrounded by a zone of greenish discolouration
due to formation of biliverdin, e.g. Viridans streptococci, and
(c) Gamma ( γ ) haemolysis, or, No haemolysis. There is no change in the medium
surrounding the colony,
5. Nutrient Broth. 500 g meat, e.g. ox heart is minced and mixed with 1 litre water. 10g
peptone and 5 g sodium chloride are added, pH is adjusted to 7.3. Uses: (1) As a basal
media for the preparation of other media, (2) To study soluble products of bacteria.
3.5.5 DISPOSAL
Once the Petri dishes have been taped shut, they should not be opened again. All
microorganisms grown during the experiment should be killed before discarding. The best
way to dispose of bacterial cultures is to pressure sterilize them in a heat stable biohazard
bag. If autoclaves or pressure cookers are not available or large enough to make this
convenient, an alternative is to bleach the plates. Saturate the plates with a 20% or "1 in 5"
household bleach solution (in other words, 1part bleach and 4 parts water). Let them sit
and soak overnight in the bleach solution before disposing of them. Please note that the
bleach solution is corrosive and needs to be thoroughly removed afterwards. In addition,
the plates can be incinerated if access to an incinerator is available.
The switch on button was on and also the outlet valve was opened down so as to increase
the temperature of the steam on the workload.
It was sterilized at 121⁰C for 15minutes. The safety valve was closed at 120⁰C and at
121⁰C, button was switched off. The medium were allowed to cool for 47⁰C before
pouring in the petridish
4.3 CONCLUSION
My four months industrial attachment with Orile Agege General Hospital has been
one of the most interesting , productive, instructive and educative experience in my life.
Through this training, I have gained new insight and more comprehensive
understanding about the real industrial working condition and practice and also
improved my soft and functional skills.
All these valuable experiences and knowledge that I have gained were not only
acquired through the direct involvement in task but also through other aspects of the
training such as: work observation, supervision, interaction with colleagues,
supervisors, superior and other people related to the field. It also exposed me to some
certain things about medical environment. And from what I have undergone, I am sure
that the industrial training programme has achieved its primary objective.
As a result of the programme, I am now more confident to build my future career
which I have already started with Orile Agege General Hospital.
4.4 RECOMMENDATION
I recommend that all institutions or bodies involve in Student Industrial Working
Experience Scheme, should provide places for industrial attachment for Student
Industrial Training Fund and also pay some allowances to students and the company
should provide more safety equipments to prevent further environmental and health
hazards.
Also, to students that are to undergo the training, I recommend that they should take
it very seriously, because it is one of the most important parts of their studies which will
help them build a very significant and effective meaning in their career pursuit.