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3rd Semester Paper
3rd Semester Paper
3rd Semester Paper
Development in angiosperms
VSAQ Section A
1) Lymphotoxin?
Lymphotoxin is a member of the tumor necrosis factor (TNF) superfamily of cytokines, whose members are
responsible for regulating the growth and function of lymphocytes and are expressed by a wide variety of cells in
the body.Lymphotoxin plays a critical role in developing and preserving the framework of lymphoid organs and
of gastrointestinal immune responses, as well as in the activation signaling of both
the innate and adaptive immune responses.Lymphotoxin alpha (LT-α, previously known as TNF-beta)
and lymphotoxin beta (LT-β), the two forms of lymphotoxin, each have distinctive structural characteristics and
perform specific functions
2) Statoliths?
Statoliths are dense amyloplasts, organelles that synthesize and store starch involved in the perception of gravity
by the plant (gravitropism), that collect in specialized cells called statocytes.
3) Articulate latex ducts?
Also called "Latex vessels ", these ducts or vessels are the result of anastamosis of many cells. They grow more or
less as parallel ducts which by means of branching and frequent anastomoses form a complex network. Latex
vessels are commonly found in many angiosperm families Papaveraceae, Compositae, Euphorbiaceae, Moraceae,
etc.
4) CER-g and TMM genes?
5) Auricle?
short, often claw-like appendages at the base of the leaf blade which tend to clasp the sheath at the culm
internode. The various shapes can be useful for identifying certain grasses.
6) Symplast?
Symplast is the protoplasts present in plants, which are interconnected by the plasmodesmata. It is the inner part
plasma membrane, which plays a vital role in transporting or free movement of water and other low-molecular-
weight solutes such as sugars, amino acids, and other ions in between cells
7) Dermitogen?
Dermatogen is the primary meristem present at the shoot and root tips of plants.They are formed from the apical
meristematic tissues.They form the outer most layer of a plant or a plant part according to the histogen theory.They form
the epidermis in these regions and act as a protective barrier which prevents water loss, injury and helps in exchange of
gases
8) Trichoblast?
A trichoblast is a cell on the exterior surface of a plant’s root that is responsible for forming root hairs. A plant’s
roots are covered in trichoblast cells to ensure healthy root growth and development.
Trichoblasts, often referred to as root fuzz or root hair, increase the surface area of the roots themselves, allowing
them to increase their nutrient-uptake capabilities.
Trichoblasts are visible in aeroponics systems, where the root zones are fully exposed to the air, rather than rooted
in a medium.
9) What is MADS- box?
The MADS box is a conserved sequence motif. The genes which contain this motif are called the MADS-box
gene family. The MADS box encodes the DNA-binding MADS domain. The MADS domain binds to DNA
sequences of high similarity to the motif CC[A/T]6GG termed the CArG-box. MADS-domain proteins are
generally transcription factors. The length of the MADS-box reported by various researchers varies somewhat, but
typical lengths are in the range of 168 to 180 base pairs, i.e. the encoded MADS domain has a length of 56 to 60
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amino acids. There is evidence that the MADS domain evolved from a sequence stretch of a type II
topoisomerase in a common ancestor of all extant eukaryotes.
10) What are homeotic mutations?
Mutations in homeotic genes cause displaced body parts (homeosis), such as antennae growing at the posterior of
the fly instead of at the head. Mutations that lead to development of ectopic structures are usually lethal.
11) Define male germ unit (MGU)?
In flowering plants, the vegetative nucleus and the two sperm cells are proposed to form a functional assemblage,
the male germ unit (MGU).
12) What is double fertilization?
Double fertilisation: It is the process of fusion of one male gamete with the egg nucleus and another male gamete with
the polar nuclei or secondary nucleus is called double fertilisation. In all angiosperm plants, there is double fertilisation.
Quiescence Dormancy
Biennial bearing (or alternate) bearing is a term used in pomology to refer to trees that have an irregular
crop load from year to year. In the "on" year too much fruit is set, leading to small fruit size. Excess weight
in the main branches can be too much for their mechanical resistance, causing them to break. Another
major consequence is that flower induction will be lower, and the subsequent year will be "off" year (too
little fruit).
The behavior could be due to plant hormones, particularly gibberellins produced in excess in the "on"
years in the embryos of the young fruit. It could also be caused by depletion of carbohydrate reserves in the
tree.
Biennial bearing is more common in certain fruit crops like mango, apple, pear, apricot and avocado, and
is almost nonexistent in grapes.
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In this type of incompatibility, pollen is binucleate and pollen behaviour is determined by the S allele present in
each pollen and stigma is wet type.
It means the incompatibility reaction of pollen is determined by its own genotypes, and not by the genotype of the
plant on which it is produced.
Generally, incompatibility reaction is determined by a single gene having multiple alleles.
Sometimes, polyploidy may lead to the loss of incompatibility due to a competition between the two S alleles
present in diploid pollen.
Important examples are pineapple, loquat, apple, pear, plum, cherry, almond, apricot, some citrus and members of
Solanaceae family.
Sporophytic incompatibility
The incompatibility reaction of pollen is governed by the genotype of plant on which the pollen is produced and
not by the genotype of the pollen.
It means the incompatibility is imposed by the maternal genotype, due to that all the pollen grains from a given
plant behave similarly.
Incompatibility occurs at the stigmatic surface resulting in the inhibition of pollen germination. Pollens are
trinucleate and the stigmatic surface is dry e.g. Mangifera indica.
Necrosis is a cellular
Apoptosis is a regular process of
process of death occurring
death of the cell that occurs in
1. when the cells are highly
the body where cell itself takes
exposed to extreme
part in the death
external conditions
It is caused by external
It is a natural process and not
2. agents such as infection,
caused by external factors
trauma, toxins.
It is caused by Bacterial
and fungal infections,
mycobacterial infections,
It is caused due to the self-
7. denatured proteins,
generated signals within a cell.
pancreatitis, or by the
deposits of antibodies and
antigens
The amplitude of the easterly phase is about twice as strong as that of the westerly phase. At the top of the vertical QBO
domain, easterlies dominate, while at the bottom, westerlies are more likely to be found. At the 30mb level, with regards
to monthly mean zonal winds, the strongest recorded easterly was 29.55 m/s in November 2005, while the strongest
recorded westerly was only 15.62 m/s in June 1995.
4) Is greenhouse effect good are bad ?
The greenhouse effect is a good thing. It warms the planet to its comfortable average of 59 degrees
Fahrenheit (15 degrees Celsius) and keeps life on earth, well, livable. Without it the world would be a frozen,
uninhabitable place, more like Mars. The problem is, mankind’s voracious burning of fossil fuels for energy is
artificially amping up the natural greenhouse effect. The result? An increase in global warming that is altering
the planet’s climate systems in countless ways. Here’s a look at what the greenhouse effect is, what causes it,
and how we can temper its contributions to our changing climate.
5) List various types of biosensors used for environmental monitering ?
Biosensors including immunosensors, aptasensors, genosensors, and enzymatic biosensors have been reported
for the detection and monitoring of various environmental pollutants, using antibodies, aptamers, nucleic acids,
and enzymes as recognition elements, respectively.
Introduction
Before diving into the details of Biosensors, let us quickly recap the concept of sensors in general.
Sensor is a device which detects changes in a physical quantity like temperature, humidity, water flow,
intensity of light etc. and converts it into a quantity that can be measured and/or analyzed.
If this definition seems a little bit confusing, then let us try to understand it with the help of a simple
example. We all know LDR or Light Dependent Resistor. It is a simple device whose resistance
changes according to the ambient light intensity.
Usually, when the intensity of the light is more, its resistance is very low and if the intensity is high,
well, its resistance shoots up to a very high value.
This means that a simple device like LDR can act as a Light Sensor as it produces a quantity (its
resistance) corresponding to the quantity it is measuring (light).
Similarly, a Biosensor is a device, which converts a Biological signal into a more useful electrical
signal. We will see more about the “Biological signal” as we move along with the tutorial.
So, a Biosensor is a combination of a Biological sensing element and a transducer, which converts the
data into electrical signals. Additionally, there will be an electronic circuit which consists of a Signal
Conditioning Unit, a Processor or Microcontroller and a Display Unit.
The following is a simplified block diagram showing the important components of a Biosensor.
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In the above block diagram, the Signal Conditioning unit comprises of an Amplifier and a Filter
(usually a Low Pass Filter) circuitry. This block diagram will be clearer when we take a look at an
example in the coming sections.
Principle of a Biosensor
The desired biological material is usually in the form of an enzyme. By a process known as
Electroenzymatic approach, which is a chemical process of converting the enzymes into corresponding
electrical signals (usually current) with the help of a transducer.
One of the commonly used Biological response is the oxidation of the enzyme. Oxidation acts as a
catalyst and alters the pH of the biological material. The change in pH will directly affect the current
carrying capacity of the enzyme, which is once again, in direct relation to the enzyme being measured.
Output of the transducer i.e. the current, is a direct representation of the enzyme being measured. The
current is generally converted into voltage so that it can be properly analyzed and represented.
Working of Biosensors
The combination of biological sensitive element and a transducer will convert the biological material
into a corresponding electrical signal. Depending on the type of enzyme, the output of the transducer
will be either current or voltage.
If the output is voltage, then well and good. But if the output is current, then this current should be
converted into equivalent voltage (using an Op-Amp based current to voltage converter) before
proceeding further.
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The output voltage signal is usually very low in amplitude and superimposed on a high frequency
noise signal. So, the signal is amplified (using an Op-Amp based Amplifier) and then passed through a
Low Pass RC Filter.
This process of amplifying and filtering the signal is the job of a Signal Processing Unit or a Signal
Conditioning Unit. The output of the signal processing unit is an analog signal that is equivalent to the
biological quantity being measured.
The analog signal can be displayed directly on an LCD display but usually, this analog signal is passed
to a Microcontroller, where the analog signal is converted into digital signal, since it is easy to
analyze, process or store a digital signal.
Example of Biosensor
Before proceeding further with different types of Biosensors and applications of Biosensor, let us
quickly take a look at a simple example of a Biosensor: The Glucometer, which is one of the most
common applications (unfortunately).
Diabetes is a disease characterized by the levels of glucose in the blood. Regularly checking the blood
glucose levels is very important for diabetes patients. Glucometers are a type Biosensors, which
measure the concentration of glucose in blood.
Usually, they consists of a test strip, which collect a small sample of blood to analyze the glucose
levels. This particular sensor implements the Electroenzymatic approach i.e. oxidation of glucose.
The test strip consists of a trigger electrode and a reference electrode. When blood is placed on the test
strip, a simple chemical reaction takes place and an electrical current is generated, which is directly
proportional to the concentration of glucose.
Internally, the Glucometer consists of a powerful processor like a Cortex-M3 or Cortex-M4 along with
current to voltage converter, amplifier, filter and a display unit.
used biological elements or bio-recognition elements are DNA, enzymes, antibodies, microorganisms,
tissues, cell receptors etc.
The next and most commonly used classification of Biosensors is based on the type of transduction
used in the sensor i.e. type of physiochemical resulting from the sensing event. Further, the biosensors
based on method of transduction are again divided into three types. They are:
Piezoelectric Biosensors
They are a subdivision of Mass based Biosensors. Piezoelectric Biosensors are also known as Acoustic
Biosensors as they are based on the principle of sound vibrations i.e. acoustics. When a mechanical
force is applied on a piezoelectric biosensor, they produce an electrical signal.
The biological elements are attached to the surface of the piezoelectric biosensor. The piezoelectric
biosensor, which is essentially a mass to frequency converter, converts the mechanical vibrations of
the sensing molecules into proportional electrical signals.
Electrochemical Biosensors
In electrochemical biosensors, the biological molecules are coated onto a probing surface. The sensing
molecules are held in place with the help of non-interfering membrane. Then, the sensing molecules
react appropriately to the compound to be detected and produces an electrical signal proportional to
the quantity being measured.
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Optical Biosensors
Optical Fibers play an important role in Optical Biosensors. The optical fibers allow detection of the
sensing elements based on the different properties of light like absorption, scattering and fluorescence.
The reaction causes changes in either of the above mentioned properties as a result of the change in the
refractive index of the interacting surface. For example, if the biological elements are antibodies and
are bound with a metal layer, the refractive index of the medium which comes in contact with this
layer will be varied.
One of the main advantages of using optical biosensors is their non-electrical nature. This allows them
to analyze multiple elements on a single layer just by varying the wavelength of the light.
Applications of Biosensors
Since their development in the early 1950’s, Biosensors have become very important in the fields of
medicine, clinical analysis and in general health monitoring. The advantages of biosensors over lab
based equipment are as follows:
Small size
Low cost
Quick results
Very easy to use
Apart from the desired medicine and health based applications, Biosensors have also found critical
applications in several other fields like industrial processing, agriculture, food processing, pollution
control etc.
So, the following is a small list of the potential fields where Biosensors are frequently used.
Commercial Biosensor in the field of personal health care are becoming quite popular, especially, self-
monitoring of blood glucose. The main advantage of this method is the blood samples cannot be
contaminated and also it is undiluted for more accurate results.
Earlier self-monitoring devices are one-time use applications i.e. test can be performed for a single
time and the sensor must be disposed after that. But advances in this field allows, reusable sensors for
improved patient care.
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Environmental Monitoring
One of the major application of Biosensor is in the field of Environmental Pollution Monitoring.
Especially, water pollution monitoring is an area where Biosensors have substantial advantage. There
are numbering pollutants that are contaminating ground water and as a result the quality drinking
water is getting worse.
Biosensors with sensing elements for nitrates and phosphates are becoming common for battling water
pollutants.
Another important application is for the military to detect chemicals and hazardous biological
specimens that can be used a bio-weapons.
Industrial Applications
Fermentation is a large industrial operation used in dairy, alcohol and other similar products. Large
scale Bacteria and cell culture must be maintained for this purpose. In order to minimize the cost of
production and risk free fermentation, it is essential to monitor these delicate yet expensive processes.
Biosensors are designed to monitor and measure the generation of a fermented product.
Food Industry
Commercial Biosensors that can measure carbohydrates, acids, alcohol, etc. are already available in
the market. Biosensors are used in food industry for food quality control for measurement of amino
acids, carbohydrates, alcohols, gases, etc.
Some of the common food industries are Wine, Beer, Yogurt, soft drinks etc.
Agriculture Industry
Biosensors in the field of agriculture are generally used for detection of pesticides.
Section B
1) Impact of elevated co2 concentration on plants at general biochemical and single
leaf levels?
2) Role of microbes in abatement of organic pollution ?
3) How does deposition of acidifying substances impact terrestrial ecosystems ?
4) Give a brief account of Biodiversity ecosystem function relationship?
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Section C
1) Describe chapman cycle of stratospheric ozone formation and explain how different natural
and anthropogenic chemical species degrade stratospheric ozone. Why is ozone whole
formed over Antartica?
2) Bioremedation?
3) Tradational ecological knowledge and Ecological restoriation
4) Impact of So2 on plants and EIA?
Section A
1) What is meant by gibbs free energy?
Gibbs free energy is a portion of total energy of a system that is available for useful work. Change
in free energy is denoted by ΔG under constant temp. And pressure relationship between change in
free energy and change in entropy is ΔG = ΔH + ΔS
2) Define activation energy?
Minimum amount of extra energy required by a reacting molecules to get converted into products.
Denoted by Ea
3) Difference between Prepatory phase and Pay off phase ?
Prepratory phase also called glucose activation phase. Here 2 molecules of ATP are invested and
hexose chain is cleaved into 2 triose phosphates
In pay off phase cell gains 2 ATP molecules and 2 NADH compounds at the end glucose gets
partially oxidized to pyruvate
4) Define substrate level phosphorylation ?
SLP is a metabolism reaction that results in the production of ATP or GTP by the transfer of
phosphate group from a substrate directly to ATP or ADP
5) Define role of any 3 enzymes involved in krebs cycle?
Citrate synthase : condensation of acetyl CoA and OAA to yield citrate and coenzyme A
Aconitase : causes isomerisation reaction in which water is ist added then removed back, moves
the hydroxyl group from one carbon atom to its neighbour
Isocitrate dehydrogenase : oxidative decarboxylation of isocitrate to α ketoglutarate
6) Role of light harvesting complexes in photosynthesis?
LHC contain pigments that absorb light for photosynthesis, transferring it to photosyseem reaction
centre that turn solsr energy into chemical energy
7) What are the various components of F1 complex of ATP synthase ?
3α 3β γ δ έ
8) What is meant by phosphoryl group transfer ?
It is a chemical process of transfer of the phosphoryl group (Po3) from a phosphate ester or
anhydride to a nucleophile
9) Explain the role of GOGAT ?
10) What are nod factors ?
These are signalling molecules produced by soil bacteria known as rhizobia in response to
flavonoid exudation from plants under nitrogen limited conditions. These initiate the establishment
of a symbiotic relationship between legumes and rhizobia by inducing nadulation
11) What is meant by S state hypothesis in water oxidation of photosynthesis?
12) What is meant by reversible phosphorylation of LHC II protein?
13) Explain the reduction of NAD to NADH+H ?
When NAD+ is converted to NADH , it gains 2 things 1) a charged hydrogen molecule (H+) 2) 2
electrons . the combination of +vely charged NAD+ and H+ coupled with 2 electrons, effectively
cancel each other out and neutralize the resulting NADH molecule
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When extra chr. Is iso chromosome , the aneuploid is called sec. Trisomic . its formula is 2n+iso one chr.
Arm is represented 4 times
The cell or individual carrying a translocated extra chr. The ends of extra chr. Are homologous to the ends
of two different chr.s that are non homologous
2) Define B chromosome? How does it differ from Autosomes?
3) What is bar eye locus and why it is famous in cytogenetics?
Bar eye locous is a region of tendem repeates
4) What are Robertsonian translocations?
A special pattern of translocation involving 2 acrocentric chrs. Is called centric fusion type or robertsonian
translocation. Type of reciprocal translocation involving 2 acrocentric chrs. Breaks occur close to
centromere affecting short arms of both chr. Transfer of segments leads to 1 very large chr. And 1 small
one ( 13-14 14_21 14-15)
5) Diffrentiate between chromosome and chromatid?
Section C
1) Give a detailed account of origin of allopolyploids and its role in evolution of crop plants? Discuess
the synthesis of hexaploid triticale and mention its Drawbacks?
2) What do you understand by the term structural changes in chromosomes?Describe different
structural alterations and discuss their significance in cytogenetics?
3) Discuss briefly the various methods for the transfer of useful alien genetic material in polyploidy
like wheat involving a) whole genome b) part of genome c) whole individual chromosome?
4) Karyotype evolution and molecular organization of eukaryotic chromosome?
5) Repetitive DNA and its significance , types with examples?
6) Robertsonian translocation, paracentric inversion and origin and meiotic behaviour of duplication
heterozygote?
7) Role of allopolypolidy in crop evolution, origin and meiotic behaviour of trisomics and tetrasomics?
8) Methods of production of alien addition and substitution lines?
9)