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Phmp-Finals Rev
Phmp-Finals Rev
Biosynthesis
- Copying/synthesizing of the viral parts that comes
VIROLOGY from the genome of the original virus.
- Study of virus 5. Assembly
- Virus - smallest microorganism/ infectious agent - The viral particle will be arranged or assembled
(size is from 20 NM — 300 NM) 6. Release
General Characteristics: - either by cell lysis or by budding
- obligate intracellular parasites (requiring host cell) - If the virus is has no envelope/no coat (naked virus)
- composed of protein coat that surrounds genetic it is released by cell lysis
material (DNA/RNA) - If the virus has additional covering (enveloped virus)
- no organelles or ribosomes it is released by budding
- Genetic material: either DNA or RNA (only one)
- Family name: ends in Viridae; Virus species: ends in VIRUS PARTICLES
Virus - Complete viral particle is called “virion”. (capsid,
- Dengue virus: Flaviviridae nucleic acid)
- Composed of RNA or DNA (never both)
VIRAL CONSTITUENTS: - Enclosed in protein coat called “capsid”
1. NUCLEIC ACIDS: DNA or RNA - Replicate only in living cells (obligate intracellular)
- Single stranded or double stranded - Can be observed only in electron microscope
- Nucleic Acid of All DNA viruses EXCEPT (Transmission Electron Microscope, Scanning
PARVOVIRUSES (single stranded) is double stranded Electron Microscope)
- Nucleic Acid of All RNA Viruses is single stranded
EXCEPT REOVIRUS (double stranded) THE 21 VIRUS FAMILIES: DNA VIRUSES (HHAPPPPy)
2. CAPSID (protein coat) - Hepadnaviridae
- Protein that surrounds the genetic material - Herpesviridae
- Capsomeres (basic unit) - Adenoviridae
- Functions: protection; aids in introducing viral - Poxviridae
DNA/RNA into suitable host cell; stimulates the - Papovaviridae
immune system to produce antibodies - Parvoviridae
- Polyomaviridae
PROCESS OF VRIAL LIFE CYCLE
1. Attachment THE 21 VIRUS FAMILIES: RNA VIRUSES (PRAyFOR PRC)TB
- The virus will attach itself into the specific receptor - Picornaviridae
- Ex. Dengue virus will only bind into Dendritic Cells - Reoviridae
2. Entry - Astroviridae
- Means of entering of the virus into the human cell - Arenaviridae
- It is the penetration of the virus - Flaviviridae
Three types of viral entry - Filoviridae
- Translocation - Orthomyxoviridae
- Endocytosis - Retroviridae
- Membrane Fusion - Paramyxoviridae
- Uncoating - Rhabdoviridae
o removal of the coat of the certain virus which is - Caliciviridae
the protein coat or the capsid
- Coronaviridae
o Happens after entry
- Togaviridae
3. Replication
- Bunyaviridae
- Goal: Produce a MRNA that is use in transcription
process (protein synthesis)
GENERAL INFORMATION
- Viral particle will transfer the genetic material into
the nucleus of the human cell - Nucleic acid of all DNA viruses are double-stranded
except Parvovirus (smallest - 18-26 nm)
- Largest virus: Poxvirus (230 x 400 nm)
- While all RNA are single-stranded except Reovirus - Treatment: Surgical Removal, Liquid Nitrogen, Laser
- Most viruses have linear genome except Vaporization, Use of Cytotoxic Agent
Papovavirus which have supercoiled, circular (PodophyllinortrichloroAcetic Acid)
genomes. - Prophylaxis: HPV vaccine
- Most viruses with icosahedral symmetry are naked A.2. Polyomaviridae (tumor)
except toga, herpes, retro and flavi, bunya, hepadna. - BK virus cystitis (inflammation of bladder) in AIDS
(with enveloped) patient
- Enveloped viruses are released by budding - JC virus PML (Progressive Multifocal
- Naked viruses (aka nucleocapsid) are released by Leukoencephalopathy) is an infection of the brain
cell lysis o first isolated in 1971 from the urine of a renal
- Smallest: Parvovirus transplant patient
- Largest: Poxvirus A.3. Vaculating virus (cytoplasmic vacuoles produces by
some of these viruses)
DNA - endemic to monkey
SS Parvoviridae - (SV-40) – simian virus 40 (simian means monkey)
DS Circular Polymaviridae
Naked
DS Circular Papillomaviridae B. Parvoviridae
Icosahedral
DS Adenoviridae - Common in dogs
DS Circular Hepadnaviridae - Simplest & smallest DNA virus, single-stranded DNA
Enveloped
DS Herpes Viridae
virus
Complex
Complex DS Poxviridae Human parvovirus B19
Coats
o Disease: Erythema infectiosum/ Fifth Disease
- "Slapped cheek" appearance in children
RNA - Arthritis in adults
SS Picorna o Transient aplastic anemia in patients w/ sickle cell
SS Astro disease
Naked
Icosahedral SS Calici - Prophylaxis: Parvovirus B19 vaccine
DS Segmented Reo
Enveloped SS Toga C. Adenoviridae
SS Flavi
- most common cause of colds (w/corona, Rhino)
Unknown SS Segmented Arena
Enveloped - flu-like symptoms
or Complex SS Corona
SS Diploid Retro - Respiratory tract infection (acute respiratory
SS Segmented Ortomyxo disease)
SS Segmented Bunya - Gastroenteritis
SS Borna - conjunctivitis (pink eye)
Helical Enveloped
SS Rhabdo
SS Paramyxo MEDICALLY IMPORTANT DNA VIRUSES
SS Filo
II. Enveloped DNA viruses: HepHeP
PACOP BREAK
Club shaped surface projection
Corona Virus
causing common colds
A purine nucleoside analog used in
Ribavirin
Lassa fever
A virus mainly infects intestinal
Echo Virus tract. Enteric cytopathogenic
human orphan virus - Sarcoma – malignant tumor in mesodermal tissue
Coryza, Mouth symptoms of measles - Lymphoma – malignant tumor of lymphoid tissue
Koplik’s Spot - Carcinoma – malignant tumor of epithelial cell
A virus resulting to premature labor
Measle REVIEW
and spontaneous abortion
VZV, Influenza, Viruses with outer envelope of Poxviridae Largest virus
HIV lipoprotein Parvoviridae Smallest virus
Viruses with enveloped RNA. Each Parvoviridae Single stranded DNA virus
Measles or Reoviridae Double stranded RNA virus
has single antigenic type that is
Rubella
transmitted by respiratory aerosols. Capsid The protein coat of a virus
Viruses with enveloped RNA. Virions Togaviridae, Examples of arbovirus
Influenza & containing RNA polymerase. Bunyaviridae
Rabies Vaccines containing killed Papovaviridae A virus with circular DNA
microorganism. Budding Enveloped virus are released via
Non-enveloped RNA. Has multiple Negri bodies Viral nucleocapsid of rabies virus
Polio virus and
antigenic type. Does not integrate Alpha Treatment for hepatitis.
Rhino virus
their genome into DNA host cell. interferon
Adenoviridae Childhood URTI Face HSV 1 can be seen in
Arbovirus Other vector-borne viral disease Shingles Aka zoster
(arthropod Epstein-Barr A virus causing burkitt's lymphoma
borne viruses) virus
Colorado tick fever caused by Hep D requires hep ____ to be
Hepatitis B
coltivirus pathogenic
Reoviridae Take note: Colorado tick fever can Hepadnaviridae Family of hep B virus
cause mild febrile disease without
rash and myalgia reverse Enzyme present in retroviridae
Togaviridae Chikunguya (fever and joint pain) transcriptase converting RNA To DNA
Sandfly fever (3 day fever or kaposi's sarcoma HSV 8 can cause
Bunyaviridae pappataci fever influenza like Vector for dengue and yellow
symptoms) caused by phlebovirus aedes aegypti
fever
Diarrhea outbreak and koplik spot The common sign of measle.
Atrovirus
gastroenteritis in children Togaviridae Rubella is under what family?
Influenza virus is under what
orthomyxoviridaea
family?
Target of polio virus in the
Peyer’s patches
intestine
Stomach Norwalk virus affects
Marburg and ebola is under
filoviridae
what family?
Chikungunya is under what MUCOUS MEMBRANE A.K.A. MUCOSA
Togaviridae
family? - Lines the body cavities that open to the exterior, i.e.
A family of virus causing lassa gastrointestinal, respiratory, urinary, and genital
Arenrscviridae
fever tracts
Respiratory RSV means? - Consists of sheets of tightly packed epithelial cells
syncytial virus attached at their bases to a layer of extracellular
Papillomavirus HPV is under what family? material called basement membrane
Coronavirus A virus causing SARS. - Many secretes mucus
CD4 cells Type of cell lowered in HIV. - Other mucosal cells have cilia, i.e. respiratory system
- Often acidic
- Membranes of the eyes are mechanically washed by
MICROBIAL DISEASE OF THE SKIN AND EYES tears, and the lysozymes in tears destroys the cell
walls of certain bacteria
Structure and Function of the Skin
- The skin is a physical barrier against microorganisms. NORMAL MICROBIOTA OF THE SKIN
- Moist areas of the skin support larger populations of
bacteria than dry areas. - Microorganisms that live on skin are resistant to
desiccation and high concentrations of salt.
1. Epidermis - Gram-positive cocci predominate on the skin.
2. Dermis - Washing does not completely remove the normal
- Components: Keratin, Sebum, Perspiration skin microbiota.
- Members of the genus Cutibacterium metabolize oil
EPIDERMIS from the oil glands and colonize hair follicles.
- The outer portion of the skin - Malassezia furfur yeast grows on oily secretions and
- Composed of several layer of epithelial cells may be the cause of dandruff.
- The outermost layer, the stratum corneum, consists - The majority (90%) of skin microbiota consist of
of many rows of dead cells that contains a coagulase-negative Staphylococcus epidermidis.
waterproofing protein called keratin
- Effective physical barrier against microorganisms. MICROBIAL DISEASES OF THE SKIN
Streptococcus pyogenes
- Group A beta-hemolytic streptococci (GAS) produce
a number of virulence factors: M protein,
deoxyribonuclease, streptokinases, and
hyaluronidase.
- Cause severe and rapid tissue destruction.
Erysipelas
- Localized infections (sties, pimples, and boils) result - Skin erupts into reddish patches with raised margins
from entry of S. aureus through openings in the skin. - Can progress to local tissue destruction and even
- Carbuncle is a furuncle which extensively damages enter the bloodstream causing sepsis
neighboring tissues - Usually appears first on the face
o Produce a hard, round deep inflammation of - High fever is common
tissue under the skin
o Patient can exhibit general illness with fever Necrotizing fasciitis
- Impetigo is highly contagious skin infection caused - Invasive group A streptococcal infection that
by Staphylococci. Characterized by isolated yellow destroys tissue and initially resembles TSS
pustules that become crusted. - “Flesh-eating bacteria”
- Toxemia occurs when toxins enter the bloodstream; - Causes by pyrogenic toxins, streptococcal M-protein
staphylococcal toxemias include scalded skin types (act as superantigens)
syndrome and toxic shock syndrome. - Associated with streptococcal TSS
FUNGAL INFECTION
Fungal infections or mycoses cause a wide range of - Diagnosis is based on the microscopic examination of
diseases in humans. skin scrapings or fungal culture
1. Superficial Infection
2. Cutaneous Infection SUBCUTANEOUS FUNGAL INFECTION
3. Subcutaneous Infection Sporotrichosis
4. Deep mycosis - Results from a soil fungus (Sporothrix schenckii) that
penetrates the skin through a wound
SUPERFICIAL FUNGAL INFECTION - Common among gardeners or people working with
Pityriasis versicolor soil
- Common superficial mycosis, which is characterized Chromoblastomycosis
by hypopigmentation or hyperpigmentation of skin - Subcutaneous mycosis characterized by verrucoid
of the neck, shoulders, chest, and back lesions of the skin
- Due to Malassezia furfur which involves only the - Most common causes are:
superficial keratin layer - Fonsecaea pedrosoi (Pedroso’s disease)
Black Piedra - Fonsecaea compacta (Fonseca’s disease)
- A superficial mycosis due to Piedraia hortae which is - Cladosporium carionii (Cladosporiosis)
manifested by a small firm black nodule involving the - Phialophora verrucosa
hair shaft Madura foot (mycetoma)
White Piedra - Chronic infection of the skin and underlying tissues
- Due to Trichosporon beigelii is characterized by a by both bacteria (actinomycetoma) and fungi
soft, friable, beige nodule of the distal ends of hair (eumycetoma).
shafts - Suppurative and granulomatous subcutaneous
Tinea Nigra mycosis
- Most typically presents as a brown to black silver - Occur most often in farmers, hunter-gatherers, and
nitrate-like stain on the palm of the hand or sole of field laborer
the foot and and is caused by Phaeoannellomyces
werneckii
PARASITIC INFESTATION OF THE SKIN - Resolve spontaneously in a few weeks or months,
but in rare cases it can lead to scarring of the cornea
Scabies - Treatment: Tetracycline ophthalmic ointment
- Involves intense local itching Trachoma
- Caused by a tiny mite Sarcoptes scabiei burrowing - A serious eye infection, one of the major cause of
and laying eggs in the skin preventable blindness
- The mite is transmitted by intimate contact - Caused by a certain serotype of C. trachomatis
- Mite lives ~25 days, but by that time eggs have been - Conjunctivitis transmitted by hands, fomites, and
laid and hatched perhaps flies
- Diagnosis: Microscopic examination of skin scrapings - Repeated infections cause inflammation leading to
- Treatment: Topical permethrin, Oral ivermectin trichiasis.
Pediculosis - Can be corrected surgically.
- Infestation by the head lice Pediculus humanus - Secondary infections by other bacterial pathogens
capitis are also a factor in the disease.
- Lice are easily transferred by head-to-head contact - Treatment: Oral azithromycin, Improve sanitary
practices and health education
MICROBIAL DISEASE OF THE EYES
FUNGAL INFECTION
STRUCTURE OF THE EYES - Fusarium, Candida, and Aspergillus fungi can infect
Conjunctiva the eye especially in Africa and Asia.
- The mucous membrane, made of epithelial cells,
lining the eyelid and covering the eyeball VIRAL INFECTION
- A transparent layer of living cells replacing the skin Herpetic keratitis
Conjunctivitis - Caused by the same herpes simplex type 1 virus
- Inflammation of the eye membranes (conjunctiva) (HSV-1) that causes cold sore and trigeminal
- Conjunctivitis is caused by several bacteria and can neuralgia
be transmitted by improperly disinfected contact - An infection of the cornea, causes deep ulcers
lenses - One of the cause of infectious blindness
Cornea
- The transparent convex portion of the anterior eye. PARASITIC INFECTION
Keratitis Acanthamoeba keratitis
- Inflammation of the cornea - Painful corneal infection caused by Acanthamoeba
- Main symptoms: red eyes, profuse tearing, protozoa
photophobia, corneal clouding, intense pain - Can cause a serious form of keratitis as to require a
corneal transplant or even removal of the eye
BACTERIAL INFECTION - Can be transmitted via water
- Bacterial microbiota of the eye usually originate from - Contributing factors include inadequate disinfecting
the skin and upper respiratory tract. procedures of contact lenses
Ophthalmia neonatorum - Using homemade saline solutions
- Caused by the transmission of Neisseria gonorrheae - Wearing contact lenses overnight
from an infected mother to an infant during its - Wearing contact lenses while swimming
passage through the birth canal. - Diagnosis is confirmed by the presence of
- Causes suppurative conjunctivitis that results to trophozoites and cysts in stained scrapings if the
corneal ulceration (may also lead to blindness) if not cornea
treated. - Treatment: Chlorhexidine 2% solution, Propamidine
- Treatment: Silver nitrate solution (1%), isethionate eye drops, Topical neomycin
Erythromycin, Dilute povidone-iodine solution
Inclusion conjunctivitis MICROBIAL DISEASE OF THE RESPIRATORY SYSTEM
- An infection caused by Chlamydia trachomatis to
the conjunctiva Structure and Function of the Respiratory System
- Transmitted to infants during birth and is - Infections of the upper respiratory system are the
transmitted in unchlorinated swimming water most common type of infection.
- Pathogens that enter the respiratory system can
infect other parts of the body. Diphtheria
The Upper Respiratory System - Diphtheria is caused by exotoxin-producing
- The upper respiratory system consists of the nose, Corynebacterium diphtheriae.
pharynx, and associated structures, such as the - Exotoxin is produced when the bacteria are
middle ear and auditory tubes. lysogenized by a phage.
- Coarse hairs in the nose filter large particles from air - A membrane, containing fibrin and dead human and
entering the respiratory tract. bacterial cells, forms in the throat and can block the
- The ciliated mucous membranes of the nose and passage of air.
throat trap airborne particles and remove them from - The exotoxin inhibits protein synthesis, and heart,
the body. kidney, or nerve damage may result.
- Lymphoid tissue, tonsils, and adenoids provide - Laboratory diagnosis is based on isolation of the
immunity to certain infections. bacteria and the appearance of growth on
- The lower respiratory system consists of the larynx, differential media.
trachea, bronchial tubes, and alveoli. - Routine immunization in the United States includes
- The ciliary escalator of the lower respiratory system diphtheria toxoid in the DTaP vaccine.
helps prevent microorganisms from reaching the - Slow-healing skin ulcerations are characteristic of
lungs. cutaneous diphtheria.
- Microbes in the lungs can be phagocytized by - There is minimal dissemination of the exotoxin in the
alveolar macrophages. bloodstream.
- Respiratory mucus contains IgA antibodies. Otitis Media
- The normal microbiota of the nasal cavity and throat - Earache, or otitis media, can occur as a complication
can include pathogenic microorganisms. of nose and throat infections.
- Pus accumulation causes pressure on the eardrum.
MICROBIAL DISEASE of the upper respiratory system - Bacterial causes include Streptococcus pneumoniae,
non- encapsulated Haemophilus influenzae,
- Specific areas of the upper respiratory system can Moraxella catarrhalis, and Streptococcus pyogenes.
become infected to produce pharyngitis, laryngitis,
tonsillitis, sinusitis, and epiglottitis. VIRAL DISEASES of the Upper Respiratory System
- These infections may be caused by several bacteria
and viruses, often in combination. The Common
- Most respiratory tract infections are self-limiting. - Any one of approximately 200 different viruses,
- H. influenzae type b can cause epiglottitis. including rhinoviruses, coronaviruses, and EV-D68,
can cause the common cold.
BACTERIAL DISEASES of the Upper Respiratory System - The incidence of colds increases during cold weather,
possibly because of increased interpersonal indoor
Streptococcal Pharyngitis contact or physiological changes.
- This infection is caused by group A beta-hemolytic
streptococci, the group that consists of MICROBIAL DISEASE of the lower respiratory system
Streptococcus pyogenes. - Many of the same microorganisms that infect the
- Symptoms of this infection are inflammation of the upper respiratory system also infect the lower
mucous membrane and fever; tonsillitis and otitis respiratory system.
media may also occur. - Diseases of the lower respiratory system include
- Rapid diagnosis is made by enzyme immunoassays. bronchitis and pneumonia.
- Immunity to streptococcal infections is type-specific
Scarlet Fever BACTERIAL DISEASE of the lower respiratory system
- Strep throat, caused by an erythrogenic toxin-
producing S. pyogenes, results in scarlet fever. Pertussis
- S. pyogenes produces erythrogenic toxin when - Pertussis is caused by Bordetella pertussis.
lysogenized by a phage. - The initial stage of pertussis resembles a cold and is
- Symptoms include a red rash, high fever, and a red, called the catarrhal stage.
enlarged tongue.
- The accumulation of mucus in the trachea and - Chlamydophila pneumoniae causes pneumonia; it is
bronchi causes deep coughs characteristic of the transmitted from person to person.
paroxysmal (second) stage. - Obligately parasitic, intracellular Coxiella burnetii
- The convalescence (third) stage can last for months. causes Q fever.
- Regular immunization for children has decreased the
incidence of pertussis. Melioidosis
Tuberculosis - Melioidosis, caused by Burkholderia pseudomallei, is
- Tuberculosis is caused by Mycobacterium transmitted by inhalation, ingestion, or through
tuberculosis. puncture wounds.
- Mycobacterium bovis causes bovine tuberculosis - Symptoms include pneumonia, sepsis, and
and can be transmitted to humans by unpasteurized encephalitis
milk.
- M. avium-intracellulare complex infects patients in VIRAL DISEASE of the lower respiratory system
the late stages of HIV infection.
- M. tuberculosis may be ingested by alveolar Viral Pneumonia
macrophages; if not killed, the bacteria reproduce in - A number of viruses can cause pneumonia as a
the macrophages. complication of infections such as influenza.
- Lesions formed by M. tuberculosis are called - The etiologies are not usually identified in a clinical
tubercles; macrophages and bacteria form the laboratory because of the difficulty in isolating and
caseous lesion that might calcify and appear in an X- identifying viruses.
ray image as a Ghon’s complex. Respiratory Syncytial Virus (RSV)
- Liquefaction of the caseous lesion results in a - RSV is the most common cause of pneumonia in
tuberculous cavity in which M. tuberculosis can infants.
grow. Influenza (Flu)
- New foci of infection can develop when a caseous - Influenza is caused by Influenzavirus and is
lesion ruptures and releases bacteria into blood or characterized by chills, fever, headache, and general
lymph vessels; this is called miliary tuberculosis. muscular aches.
- A positive tuberculin skin test can indicate either an - Hemagglutinin (HA) and neuraminidase (NA) spikes
active case of TB, prior infection, or vaccination and project from the outer lipid bilayer of the virus.
immunity to the disease. - Viral strains are identified by antigenic differences in
- Active infections can be diagnosed by detection of their protein coats (A, B, and C); influenza A is further
IFN-γ or rapid PCR test for M. tuberculosis. subdivided by differences in the HA and NA spikes
- Chemotherapy usually involves three or four drugs - Antigenic shifts and antigenic drift enable the virus
taken for at least 6 months; multidrug-resistant M. to evade natural immunity.
tuberculosis is becoming prevalent. - Multivalent vaccines are available
- BCG vaccine for tuberculosis consists of a live, - Zanamivir and oseltamivir are effective drugs against
avirulent culture of M. bovis. influenza A virus.
Bacterial Pneumonias
- Typical pneumonia is caused by S. pneumoniae. FUNGAL DISEASE of the lower respiratory system
- Atypical pneumonias are caused by other
microorganisms. - Fungal spores are easily inhaled; they may germinate
- Pneumococcal pneumonia is caused by encapsulated in the lower respiratory tract.
Streptococcus pneumoniae. - The incidence of fungal diseases has been increasing
- Children under 5 and adults over 65 are most in recent years. 3. The mycoses in the following
susceptible to H. influenzae pneumonia. sections can be treated with itraconazole.
- Mycoplasma pneumoniae causes mycoplasmal Histoplasmosis
pneumonia; it is an endemic disease. - Histoplasma capsulatum causes a subclinical
- Legionellosis is caused by the aerobic gram-negative respiratory infection that only occasionally
rod Legionella pneumophila. progresses to a severe, generalized disease.
- Chlamydophila psittaci, the bacterium that causes - The disease is acquired by inhaling airborne conidia.
psittacosis (ornithosis), is transmitted by contact - Isolating or identifying the fungus in tissue samples
with contaminated droppings and exudates of fowl. is necessary for diagnosis.
Coccidioidomycosis MICROBIAL DISEASES OF THE MOUTH AND ORAL
- Inhaling the airborne arthroconidia of Coccidioides CAVITY
immitis can result in coccidioidomycosis.
Dental caries
Pneumocystis Pneumonia - Dental caries, tartar, and gingivitis are caused by
- Pneumocystis jirovecii is found in healthy human overgrowth of oral bacteria, usually Streptococcus
lungs. and Actinomyces species, as a result of insufficient
- P. jirovecii causes disease in immunosuppressed dental hygiene.
patients. Gingivitis
Blastomycosis - Gingivitis can worsen, allowing Porphyromonas,
- Blastomycosis Also known as North American Streptococcus, and Actinomyces species to spread
Blastomycosis and cause periodontitis. When Prevotella
- Blastomyces dermatitidis is the causative agent of intermedia, Fusobacterium species, and Treponema
blastomycosis vicentii are involved, it can lead to acute necrotizing
- The infection begins in the lungs and can spread to ulcerative gingivitis.
cause extensive abscesses Herpetic gingivostomatitis
- The herpes simplex virus type 1 can cause lesions of
OTHER FUNGI INVOLVED IN RESPIRATORY DISEASE the mouth and throat called herpetic
- Opportunistic fungi can cause respiratory disease in gingivostomatitis.
immunosuppressed hosts, especially when large Oral thrush
numbers of spores are inhaled. - Other infections of the mouth include oral thrush, a
- Among these fungi are Aspergillus, Rhizopus, and fungal infection caused by overgrowth of Candida
Mucor yeast, and mumps, a viral infection of the salivary
glands caused by the mumps virus, a paramyxovirus.
MICROBIAL DISEASE OF THE DIGESTIVE SYSTEM
BACTERIAL INFECTIONS OF THE GASTROINTESTINAL
Anatomy and Normal Microbiota of the Digestive TRACT
System
- The digestive tract, consisting of the oral cavity, Gastrointestinal illness
pharynx, esophagus, stomach, small intestine, and - Major causes of gastrointestinal illness include
large intestine, has a normal microbiota that is Salmonella spp., Staphylococcus spp., Helicobacter
important for health. pylori, Clostridium perfringens, Clostridium difficile,
- The constant movement of materials through the Bacillus cereus, and Yersinia bacteria.
gastrointestinal canal, the protective layer of mucus, Clostridium
the normal microbiota, and the harsh chemical - C. difficile is an important cause of hospital acquired
environment in the stomach and small intestine help infection.
to prevent colonization by pathogens. Cholera
- Infections or microbial toxins in the oral cavity can - Vibrio cholerae causes cholera, which can be a
cause tooth decay, periodontal disease, and various severe diarrheal illness.
types of ulcers. E. coli
- Infections and intoxications of the gastrointestinal - Different strains of E. coli, including ETEC, EPEC, EIEC,
tract can cause general symptoms such as nausea, and EHEC, cause different illnesses with varying
vomiting, diarrhea, and fever. Localized degrees of severity.
inflammation of the GI tract can result in gastritis, Peptic Ulcer
enteritis, gastroenteritis, hepatitis, or colitis, and - H. pylori is associated with peptic ulcers.
damage to epithelial cells of the colon can lead to Typhoid fever
dysentery. - Salmonella enterica serotypes can cause typhoid
- Foodborne illness refers to infections or fever, a more severe illness than salmonellosis.
intoxications that originate with pathogens or toxins Treatment
ingested in contaminated food or water. - Rehydration and other supportive therapies are
often used as general treatments.
- Careful antibiotic use is required to reduce the risk of - Enterobius vermicularis are nematode pinworms
causing C. difficile infections and when treating transmitted by the fecal-oral route. After ingestion,
antibiotic-resistant infections. they travel to the colon where they cause
enterobiasis.
VIRAL INFECTIONS OF THE GASTROINTESTINAL TRACT - Trichuris trichiura can be transmitted through soil or
fecal contamination and cause trichuriasis. After
Viral gastroenteritis ingestion, the eggs travel to the intestine where the
- Common viral causes of gastroenteritis include larvae emerge and mature, attaching to the walls of
rotaviruses, noroviruses, and astroviruses. the colon and cecum.
Viral hepatitis - Trichinella spp. is transmitted through undercooked
- Hepatitis may be caused by several unrelated meat. Larvae in the meat emerge from cysts and
viruses: hepatitis viruses A, B, C, D, and E. mature in the large intestine. They can migrate to the
- The hepatitis viruses differ in their modes of muscles and form new cysts, causing trichinosis.
transmission, treatment, and potential for chronic - Taenia spp. and Diphyllobothrium latum are
infection. tapeworms transmitted through undercooked food
or the fecal- oral route. Taenia infections cause
PROTOZOAN INFECTIONS of the gastrointestinal tract taeniasis. Tapeworms use their scolex to attach to
the intestinal wall. Larvae may also move to muscle
Protozoal Infections or brain tissue.
- Giardiasis, cryptosporidiosis, amoebiasis, and - Echinococcus granulosus is a cestode transmitted
cyclosporiasis are intestinal infections caused by through eggs in the feces of infected animals,
protozoans. especially dogs. After ingestion, eggs hatch in the
- Protozoan intestinal infections are commonly small intestine, and the larvae invade the intestinal
transmitted through contaminated food and water wall and travel through the circulatory system to
- Treatment varies depending on the causative agent, form dangerous cysts in internal organs, causing
so proper diagnosis is important. hydatid disease.
- Microscopic examination of stool or biopsy - Flukes are transmitted through aquatic plants or fish.
specimens is often used in diagnosis, in combination Liver flukes cause disease by interfering with the bile
with other approaches. duct. Intestinal flukes develop in the intestines,
where they attach to the intestinal epithelium.
HELMINTHIC INFECTIONS of the gastrointestinal tract
MICROBIAL DISEASE OF THE CARDIOVASCULAR AND
Helminthic Infections LYMPHATIC SYSTEM
- Helminths often cause intestinal infections after
transmission to humans through exposure to Structure and Function of the Cardiovascular and
contaminated soil, water, or food. Signs and Lymphatic Systems
symptoms are often mild, but severe complications - The heart, blood, and blood vessels make up the
may develop in some cases. cardiovascular system.
- Ascaris lumbricoides eggs are transmitted through - Lymph, lymph vessels, lymph nodes, and lymphoid
contaminated food or water and hatch in the organs constitute the lymphatic system.
intestine. Juvenile larvae travel to the lungs and then - Plasma transports dissolved substances. Red blood
to the pharynx, where they are swallowed and cells carry oxygen. White blood cells are involved in
returned to the intestines to mature. These the body’s defense against infection.
nematode roundworms cause ascariasis. - Fluid that filters out of capillaries into spaces
- Necator americanus and Ancylostoma doudenale between tissue cells is called interstitial fluid.
cause hookworm infection when larvae penetrate - Interstitial fluid enters lymph capillaries and is called
the skin from soil contaminated by dog or cat feces. lymph; vessels called lymphatics return lymph to the
They travel to the lungs and are then swallowed to blood. Lymph nodes contain fixed macrophages, B
mature in the intestines. cells, and T cells.
- Strongyloides stercoralis are transmitted from soil
through the skin to the lungs and then to the
intestine where they cause strongyloidiasis.
BACTERIAL DISEASES OF THE CARDIOVASCULAR AND - Penicillin is administered as a preventive measure
LYMPHATIC SYSTEMS against subsequent streptococcal infections.
Tularemia
Sepsis and Septic Shock - Tularemia is caused by Francisella tularensis. The
- Sepsis is an inflammatory response caused by the reservoir is small wild mammals, especially rabbits.
spread of bacteria or their toxin from a focus of - Signs include ulceration at the site of entry, followed
infection. Septicemia is sepsis that involves by septicemia and pneumonia.
proliferation of pathogens in the blood. Brucellosis
- Gram-negative sepsis can lead to septic shock, - Also known as undulant fever
characterized by decreased blood pressure. - Brucellosis can be caused by Brucella abortus, B.
Endotoxin causes the symptoms. melitensis, and B. suis.
- Antibiotic-resistant enterococci and group B - The bacteria enter through minute breaks in the
streptococci cause gram-positive sepsis. mucosa or skin, reproduce in macrophages, and
- Puerperal sepsis begins as an infection of the uterus spread via lymphatics to liver, spleen, or bone
following childbirth or abortion; it can progress to marrow.
peritonitis or septicemia. - Signs include malaise and fever that spikes each
- Streptococcus pyogenes is the most frequent cause evening (undulant fever).
of puerperal sepsis. - Diagnosis is based on serological tests
- Oliver Wendell Holmes and Ignaz Semmelweiss Anthrax
demonstrated that puerperal sepsis was transmitted - Bacillus anthracis causes anthrax. In soil, endospores
by the hands and instruments of midwives and can survive for up to 60 years.
physicians. - Grazing animals acquire an infection after ingesting
the endospores.
BACTERIAL INFECTIONS OF THE HEART - Humans contract anthrax by handling hides from
infected animals. The endospores enter through cuts
- The inner layer of the heart is the endocardium. in the skin, respiratory tract, or mouth.
- Subacute bacterial endocarditis is usually caused by - Entry through the skin results in a papule that can
alpha- hemolytic streptococci, staphylococci, or progress to sepsis. Entry through the respiratory
enterococci. tract can result in septic shock.
- The infection arises from a focus of infection, such as - Diagnosis is based on isolating and identifying the
a tooth extraction. bacteria.
- Preexisting heart abnormalities are predisposing Gangrene
factors. - Soft tissue death from ischemia (loss of blood supply)
- Signs include fever, weakness, and heart murmur. is called gangrene.
Acute bacterial endocarditis is usually caused by - Microorganisms grow on nutrients released from
Staphylococcus aureus. gangrenous cells.
- The bacteria cause rapid destruction of heart valves - Gangrene is especially susceptible to the growth of
Rheumatic Fever anaerobic bacteria such as Clostridium perfringens,
- Rheumatic fever is an autoimmune complication of the causative agent of gas gangrene
streptococcal infections. - C. perfringens can invade the wall of the uterus
- Rheumatic fever is expressed as arthritis or during improperly performed abortions.
inflammation of the heart. It can result in permanent - Surgical removal of necrotic tissue, hyperbaric
heart damage. chambers, and amputation are used to treat gas
- Antibodies against group A beta-hemolytic gangrene.
streptococci react with streptococcal antigens
deposited in joints or heart valves or cross-react with SYSTEMIC DISEASES CAUSED BY BITES AND SCRATCHES
the heart muscle.
- Rheumatic fever can follow a streptococcal infection, - Pasteurella multocida, introduced by the bite of a
such as streptococcal sore throat. Streptococci might dog or cat, can cause septicemia.
not be present at the time of rheumatic fever. - Anaerobic bacteria infect deep animal bites.
- Prompt treatment of streptococcal infections can - Cat-scratch disease is caused by Bartonella henselae.
reduce the incidence of rheumatic fever. - Rat-bite fever is caused by Streptobacillus
moniliformis and Spirillum minus.
VECTOR-TRANSMITTED DISEASES Chikungunya Fever
- The chickungunya virus, which causes fever and
- Plague is caused by Yersinia pestis. The vector is severe joint pain, is transmitted by Aedes mosquito
usually the rat flea (Xenopsylla cheopis). Classic Viral Hemorrhagic Fevers
- Relapsing fever is caused by Borrelia spp. and - Yellow fever is caused by the yellow fever virus. The
transmitted by soft ticks. vector is the Aedes aegypti mosquito.
- Lyme disease is caused by Borrelia burgdorferi and is - Signs and symptoms include fever, chills, headache,
transmitted by a tick (Ixodes) nausea, and jaundice.
- Human ehrlichiosis and anaplasmosis are caused by - Diagnosis is based on the presence of virus-
Ehrlichia and Anaplasma and are transmitted by neutralizing antibodies in the host.
Ixodes ticks. - No treatment is available, but there is an attenuated,
- Typhus is caused by rickettsias, obligate intracellular live viral vaccine.
parasites of eukaryotic cell Dengue
- Dengue is caused by the dengue virus and is
VIRAL DISEASES OF THE CARDIOVASCULAR AND transmitted by the Aedes mosquito.
LYMPHATIC SYSTEMS - Signs are fever, muscle and joint pain, and rash.
- Severe dengue is characterized by bleeding and
Burkitt’s Lymphoma organ failure.
- Epstein-Barr virus (EB virus, HHV-4) causes Burkitt’s - Mosquito abatement is necessary to control the
lymphoma. disease.
- Burkitt’s lymphoma tends to occur in patients whose Emerging Viral Hemorrhagic Fevers
immune system has been weakened; for example, by - Human diseases caused by Marburg, Ebola, and
malaria or AIDS Lassa fever viruses were first noticed in the late
Infectious Mononucleosis 1960s.
- Infectious mononucleosis is caused by EB virus. - Ebolavirus is found in fruit bats; Lassa fever viruses
- The virus multiplies in the parotid glands and is are found in rodents. Rodents are the reservoirs for
present in saliva. It causes the proliferation of Argentine and Bolivian hemorrhagic fevers.
atypical lymphocytes Hantavirus
- The disease is transmitted by the ingestion of saliva - Hantavirus pulmonary syndrome and hemorrhagic
from infected individuals. fever with renal syndrome are caused by Hantavirus.
- Diagnosis is made by an indirect fluorescent- The virus is contracted by inhalation of dried rodent
antibody technique. urine and feces
- EB virus may cause other diseases, including cancers
and multiple sclerosis PROTOZOAN DISEASES OF THE CARDIOVASCULAR AND
LYMPHATIC SYSTEMS
OTHER DISEASES AND EPSTEIN-BARR VIRUS
Chagas Disease
- EB virus is associated with certain cancers and - Also known as American
autoimmune diseases. - Trypanosomiasis Trypanosoma cruzi causes Chagas
- Cytomegalovirus Infections disease. The reservoir includes many wild animals.
- CMV (HHV-5) causes intranuclear inclusion bodies The vector is a reduviid, the “kissing bug.”
and cytomegaly of host cells. Toxoplasmosis
- CMV is transmitted by saliva and other body fluids. - Toxoplasmosis is caused by Toxoplasma gondii.
- CMV inclusion disease can be asymptomatic, a mild - T. gondii undergoes sexual reproduction in the
disease, or progressive and fatal. intestinal tract of domestic cats, and oocysts are
Immunosuppressed patients may develop eliminated in cat feces.
pneumonia. - In the host cell, sporozoites reproduce to form either
- If the virus crosses the placenta, it can cause tissue- invading tachyzoites or bradyzoites.
congenital infection of the fetus, resulting in - Humans contract the infection by ingesting
impaired mental development, neurological tachyzoites or tissue cysts in undercooked meat from
damage, and stillbirth. an infected animal or contact with cat feces.
- Congenital infections can occur. Signs and symptoms
include severe brain damage or vision problems.
Malaria MICROBIAL DISEASE OF THE NERVOUS SYSTEM
- The signs and symptoms of malaria are chills, fever,
vomiting, and headache, which occur at intervals of Structure and Function of the Nervous System
2 to 3 days. - The central nervous system (CNS) consists of the
- Malaria is transmitted by Anopheles mosquitoes. brain, which is protected by the skull bones, and the
The causative agent is any one of four species of spinal cord, which is protected by the backbone.
Plasmodium - The peripheral nervous system (PNS) consists of the
- Sporozoites reproduce in the liver and release nerves that branch from the CNS
merozoites into the bloodstream, where they infect - The CNS is covered by three layers of membranes
red blood cells and produce more merozoites. called meninges: the dura mater, arachnoid mater,
Leishmaniasis and pia mater. Cerebrospinal fluid (CSF) circulates
- Leishmania spp., which are transmitted by sandflies, between the arachnoid mater and the pia mater in
cause leishmaniasis. the subarachnoid space.
- The protozoa reproduce in the liver, spleen, and - The blood–brain barrier normally prevents many
kidneys. substances, including antibiotics, from entering the
- Leishmaniasis is treated with liposomal amphotericin brain.
B. - Microorganisms can enter the CNS through trauma,
Babesiosis along peripheral nerves, and through the
- Babesiosis is caused by the protozoan Babesia bloodstream and lymphatic system.
microti and is transmitted to humans by ticks. - An infection of the meninges is called meningitis. An
infection of the brain is called encephalitis
HELMINTHIC DISEASE OF THE CARDIOVASCULAR AND
LYMPHATIC SYSTEMS BACTERIAL DISEASES OF THE NERVOUS SYSTEM
FUNGAL DISEASE OF THE NERVOUS SYSTEM MICROBIAL DISEASE OF URINARY & REPRODUCTIVE
SYSTEM
Cryptococcus neoformans
- Meningitis Also known as cryptococcosis Structure and Function of the Urinary System
- Cryptococcus spp. are encapsulated yeastlike fungi - The urinary system regulates the chemical
that cause cryptococcosis. composition and volume of the blood and excretes
- The disease may be contracted by inhaling dried nitrogenous waste and water.
infected pigeon or chicken droppings. - Urine is transported from the kidneys through
- The disease begins as a lung infection and may ureters to the urinary bladder and is eliminated
spread to the brain and meninges. through the urethra
- Immunosuppressed individuals are most susceptible - Valves prevent urine from flowing back to the
to cryptococcosis. urinary bladder and kidneys.
- Diagnosis is based on latex agglutination tests for - The flushing action of urine and normal urine itself
cryptococcal antigens in serum or CSF. have some antimicrobial value.
PROTOZOAN DISEASES OF THE NERVOUS SYSTEM Structure and Function of the Reproductive Systems
- The reproductive system produces gametes for
African Trypanosomiasis reproduction and, in the female, supports the
- African trypanosomiasis is caused by the protozoa growing embryo.
Trypanosoma brucei gambiense and T.b. - The female reproductive system consists of two
rhodesiense and is transmitted by the bite of the ovaries, two uterine tubes, the uterus, the cervix, the
tsetse fly. vagina, and the external genitals.
- The disease affects the nervous system of the human - The male reproductive system consists of two testes,
host, causing lethargy and eventually coma. It is ducts, accessory glands, and the penis; seminal fluid
commonly called sleeping sickness. leaves the male body through the urethra.
- Vaccine development is hindered by the protozoan’s
ability to change its surface antigens. Normal Microbiota of the Urinary and Reproductive
Amebic Meningoencephalitis Systems
- Encephalitis caused by the protozoan Naegleria - Microbial diseases of these systems can result from
fowleri is almost always fatal. infection from an outside source or from
- Granulomatous amebic encephalitis, caused by opportunistic infection by members of the normal
Acanthamoeba spp. and Balamuthia mandrillaris, is microbiota.
a chronic disease. - Gram-positive bacteria predominate in the urinary
tract.
NERVOUS SYSTEM DISEASES CAUSED BY PRIONS - Lactobacilli dominate the vaginal microbiota;
actinobacteria dominate the microbiome of the
- Prions are self-replicating proteins with no seminal vesicle
detectable nucleic acid.
- Diseases of the CNS that progress slowly and cause
spongiform degeneration are caused by prions
BACTERIAL DISEASES OF THE URINARY SYSTEM - Women might be asymptomatic unless the infection
spreads to the uterus and uterine tubes (see pelvic
- Urethritis, cystitis, and ureteritis are inflammations inflammatory disease).
of tissues of the lower urinary tract. - Gonorrheal endocarditis, gonorrheal meningitis, and
- Pyelonephritis can result from lower urinary tract gonorrheal arthritis are complications that can affect
infections or from systemic bacterial infections. both sexes if gonorrheal infections are untreated.
- Opportunistic gram-negative bacteria from the - Ophthalmia neonatorum is an eye infection acquired
intestines often cause urinary tract infections. by infants during passage through the birth canal of
- Healthcare-associated infections of the urinary an infected mother.
system can occur following catheterization. - Gonorrhea is diagnosed by ELISA or NAATS
- Treatment of urinary tract infections depends on Nongonococcal Urethritis (NGU)
isolation and antibiotic sensitivity testing of the - Most cases of nongonococcal urethritis (NGU), or
causative agents. nonspecific urethritis (NSU), are caused by
Cystitis Chlamydia trachomatis.
- Inflammation of the urinary bladder, or cystitis, is - C. trachomatis infection is the most common STI.
common in females. - Symptoms of NGU are often mild or lacking, although
- The most common etiologies are E. coli and uterine tube inflammation and sterility may occur.
Staphylococcus saprophyticus. - C. trachomatis can be transmitted to infants’ eyes at
Pyelonephritis birth.
- Inflammation of the kidneys, or pyelonephritis, is - Diagnosis is based on detection of chlamydial DNA in
usually a complication of lower urinary tract urine.
infections. - Ureaplasma urealyticum and Mycoplasma
- About 75% of pyelonephritis cases are caused by E. genitalium also cause NGU.
coli. Pelvic Inflammatory Disease (PID)
Leptospirosis - Extensive bacterial infection of the female pelvic
- The spirochete Leptospira interrogans is the cause of organs, especially of the reproductive system, is
leptospirosis. called pelvic inflammatory disease (PID).
- The disease is transmitted to humans by urine- - PID is caused by N. gonorrhoeae, C. trachomatis, and
contaminated water. other bacteria. Infection of the uterine tubes is called
- Leptospirosis is characterized by chills, fever, salpingitis.
headache, and muscle aches. Syphilis
- Syphilis is caused by Treponema pallidum, a
MICROBIAL DISEASES OF THE REPRODUCTIVE SYSTEMS spirochete that has not been cultured in vitro.
- Laboratory cultures are grown in rabbits or cell
- Most infections of the reproductive system are cultures
sexually transmitted infections (STIs). The incidence - The primary lesion is a small, hard-based chancre at
of STIs is at an all-time high. the site of infection. The bacteria then invade the
- Most STIs can be prevented by the use of condoms. blood and lymphatic system, and the chancre
spontaneously heals
BACTERIAL DISEASES OF THE REPRODUCTIVE SYSTEMS - The appearance of a widely disseminated rash on the
skin and mucous membranes marks the secondary
Gonorrhea stage. Spirochetes are present in the lesions of the
- Neisseria gonorrhoeae causes gonorrhea. rash
- Gonorrhea is a common reportable communicable - The patient enters a latent period after the
disease in the United States. secondary lesions spontaneously heal.
- N. gonorrhoeae attaches to mucosal cells of the oral- - At least 10 years after the secondary lesion, tertiary
pharyngeal area, genitals, eyes, and rectum by lesions called gummas can appear on many organs
means of fimbriae - Congenital syphilis, resulting from T. pallidum
- Symptoms in men are painful urination and pus crossing the placenta during the latent period, can
discharge. Blockage of the urethra and sterility are cause neurological damage in the newborn.
complications of untreated cases. - T. pallidum is identifiable through darkfield
microscopy of fluid from primary and secondary
lesions.
- Many serological tests, such as VDRL, RPR, and FTA- - Vulvovaginal candidiasis is characterized by lesions
ABS, can be used to detect the presence of that produce itching and irritation.
antibodies against T. pallidum during any stage of the - Predisposing factors are pregnancy, diabetes, and
disease broad-spectrum antibacterial chemotherapy.
Lymphogranuloma Venereum (LGV) - Diagnosis is based on observation of the fungus and
- C. trachomatis causes lymphogranuloma venereum its isolation from lesions.
(LGV), which is primarily a disease of tropical and
subtropical regions. PROTOZOAN DISEASE OF THE REPRODUCTIVE
- The bacteria are spread in the lymph system and SYSTEMS
cause enlargement of the lymph nodes, obstruction
of lymph vessels, and swelling of the external Trichomoniasis
genitals. - Trichomonas vaginalis causes trichomoniasis when
- Diagnosis is by ELISA or NAA the pH of the vagina increases.
Chancroid (Soft Chancre) - Diagnosis is based on observation of the protozoa in
- Chancroid, a swollen, painful ulcer on the mucous purulent discharges from the site of infection.
membranes of the genitals or mouth, is caused by
Haemophilus ducreyi
Bacterial Vaginosis
- Bacterial vaginosis is an infection without
inflammation caused by Gardnerella vaginalis.
- Diagnosis of G. vaginalis is based on the presence of
clue cells
Genital Herpes
- Herpes simplex viruses (HSV-1 and HSV-2) cause
genital herpes.
- Symptoms of the infection are painful urination,
genital irritation, and fluid-filled vesicle
- The virus might enter a latent stage in nerve cells.
Vesicles reappear following trauma and hormonal
changes.
- Neonatal herpes is contracted during fetal
development or birth. It can result in neurological
damage or infant fatalities.
Genital Warts
- Human papillomaviruses cause warts.
- Some human papillomaviruses that cause genital
warts cause cancer.
AIDS
- AIDS is a sexually transmitted disease of the immune
system.
- Other viral STIs that do not infect the genitourinary
system include hepatitis B, hepatitis C, and Zika virus
disease.
Candidiasis
- Candida albicans causes NGU in men and
vulvovaginal candidiasis, or yeast infection, in
women.