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2 Specimen Collection and Processing PDF
2 Specimen Collection and Processing PDF
Vicencio
▪ O and P procedure for stool specimen
▪ Ova refers to the eggs stage of the parasites
▪ Parasites encompasses the other morphologic forms
▪ Two components associated with routine parasitology:
1. Macroscopic
2. Microscopic
Microscopic examination consists of three possible components
a. Collection
b. Transport
c. Fixatives
▪ The typical stool collection protocol consists of three (3) specimens
▪ One specimen collected every other day or a total of three collected in 10 days
▪ In cases of amebiasis, six (6) specimens in 14 days is acceptable.
▪ Certain medications and substances may interfere with the detection of
parasites
▪ Stool samples from patients undergoing therapy that includes:
- Barium - Antacids
- Bismuth or mineral oil - laxatives
- should be collected prior to therapy or not until 5-7 days after the completion of
therapy
▪ Antibiotics or antimalarial medications – should be delayed for two (2)
weeks following therapy.
▪ Clean, wide-mouthed containers made of waxed cardboard or plastic,
watertight with a tight-fitting lid.
▪ 2-5 g is the acceptable amount of stool required for parasite study
▪ Size of the walnut or pea size or thumb size
▪ Urine contamination is not allowed as it may destroy some parasites
▪ Stool should not be retrieved from toilet bowl water because free-living
protozoa and nematodes may confused with human parasites.
▪ Also, water may destroy parasites.
▪ Toilet paper may mask parasites or make examination of the sample
difficult.
▪ Temporary storage of fecal samples in a refrigerator (3 to 5 C) is
acceptable.
▪ Time frame from sample collection to receipt and examination in the
lab is also an important consideration in testing.
▪ The recommended time frame for liquid stool within 30 minutes of
passage.
▪ Semi-formed stool should be examine within 1 hour of passage
▪ Formed-stool specimens can be held for 24 hours following collection.
▪ Should be labeled with the patient’s name and identification number
▪ Age and Sex
▪ Physician’s name
▪ Date and time of collection
▪ Other information :
▪ Suspected diagnosis
▪ Travel history
▪ Clinical findings
*The specimen should be placed into a zip lock plastic bag for transport to the laboratory and
the paperwork accompanying the specimen should be separated from the specimen
container.
1. How many stool samples should be collected when following the typical O&P
collection protocol?
A. 1
B. 2
C. 3
D. 4
1. How many stool samples should be collected when following the typical O&P
collection protocol?
A. 1
B. 2
C. 3
D. 4
▪ Are substances that preserve the morphology of protozoa
and prevent further development of certain helminth eggs
and larvae
Disadvantages
1. Schaudinn solution contains mercuric chloride
▪ Contains merthiolate (also called thimerosal) and iodine which act as
staining components, while formalin acts as preservative.
▪ useful for the fixation of intestinal protozoans, helminth eggs and
larvae.
▪ Preserved stools ca be examined through wet mount, but difficulty in
the specific identification of protozoans has been encountered.
▪ Staining of preserved stools in the MIF yields unsatisfactory results.
▪ Can be used for performing concentration techniques and permanent
stained smears.
▪ Only requires single vial and it is mercury free.
Advantages
1. Easy to prepare, has a long shelf-life.
2. 2. Can be used for preparing smears for staining with the modified
acid-fast stain to detect coccidian cyst.
Disadvantages
1. The addition of albumin to the microscope slide
2. Protozoa is not clear
▪ Free of formalin and mercury
▪ can be used for concentration techniques and permanent
stained smears.
2. What is the purpose of fixatives for the collection of stool samples?
A. Enhance the motility of protozoa.
B. Stain the cytoplasmic inclusions of protozoa.
C. Preserve the morphology of protozoa and prevent further
development of helminths.
D. All of the above.
2. What is the purpose of fixatives for the collection of stool samples?
A. Enhance the motility of protozoa.
B. Stain the cytoplasmic inclusions of protozoa.
C. Preserve the morphology of protozoa and prevent further
development of helminths.
D. All of the above.
3. Which of the following characteristics is observed during the
macroscopic examination of stool specimens?
a. Consistency
b. Color
c. Adult worms
d. All of the above
3. Which of the following characteristics is observed during the
macroscopic examination of stool specimens?
a. Consistency
b. Color
c. Adult worms
d. All of the above
Macroscopic Examination
▪ Consistency
▪ Color
▪ Gross abnormalities
▪ Three (3) distinctive procedures
1. Direct wet preparations
2. Concentrated techniques
3. Permanently stained smear
Disadvantages:
1. The preparation contains more fecal debris than a flotation technique
▪ Recommended for the recovery of Trichuris, Capillaria, and trematode
eggs especially Schistosoma.
▪ Also the choice if stool material comes from animals like cats and dogs
▪ Reagents:
1. 40% HCl
2. Ether
▪ Disadvantages include: loss of parasite to the plug of debris and
possible destruction of protozoan cysts
▪ Useful for the recovery of both helminth eggs and protozoan cysts.
▪ Makes use of 10% formalin which is an all purpose fixative.
▪ Can also be done with formalin-preserved and PVA- preserved stools.
▪ More parasites can be recovered from formalin-preserved samples
▪ Parasite morphology is also better preserved in formalin than in PVA
▪ Also based on differences in specific gravity between the sample
debris, which in this case is heavy and sinks to the bottom of the test
tube, and potential parasites, which are lighter and float toward the top
of the tube.
▪ Zinc sulfate with a specific gravity of 1.18 to 1.20, is used as the
concentrating solution.
▪ Parasites float to the surface and can be skimmed from the top of the
tube.
▪ 33% ZnSO4 solution is the main reagent.
▪ If parasite is exposed to high specific gravity, distortion and shrinkage of
protozoan cysts and thin-walled nematodes eggs may occur.
Advantage:
1. more fecal debris is removed and it yields a cleaner preparation
Disadvantage:
1. some helminth eggs are very dense and will not float
▪ Is considered as the BEST for the recovery of coccidian oocysts,
mainly Cryptosporidium, Cyclospora and Isospora.
▪ Boiled sugar solution preserved with phenol is used in this method.
▪ With this procedure, visualization of oocysts can be better appreciated
through the use of a phase microscope.
▪ Use of a saturated table salt solution.
▪ Stools are directly mixed with brine solution.
▪ Centrifugation is not needed since helminth eggs rise to the surface of
the solution.
▪ Low cost and simple but helminth eggs like hookworm and
Schistosoma become badly shrunken.
▪ Not useful for operculated eggs like Clonorchis, and heterophyids
because these do not float in brine solution
6. Which of the following parasitic stages is not usually detected after
using a concentration technique?
A. Protozoan cysts
B. Protozoan trophozoites
C. Helminth eggs
D. Helminth larvae
6. Which of the following parasitic stages is not usually detected after
using a concentration technique?
A. Protozoan cysts
B. Protozoan trophozoites
C. Helminth eggs
D. Helminth larvae
▪ The final procedure in the O&P examination.
▪ defined as a microscope slide that contains a fixed sample that has
been allowed to dry and subsequently stained.
▪ designed to confirm the presence of protozoa cysts and/or trophozoites.
▪ allows laboratory technicians to observe detailed features of protozoa
by staining intracellular organelles
▪ The slides are reviewed under oil immersion (100×);
▪ 300 fields are reviewed before the slide can be considered negative
▪ Two common stains are used for routine O and P testing and these
includes
1. Trichrome (Wheatly modification)
2. Iron hematoxylin
▪ Special stains are also available.
▪ Specialized stains include the modified acid-fast and modified trichrome
stains
▪ Most widely used permanent stain
▪ it uses reagents with a relatively long shelf life and the procedure is
easy to perform
▪ distinct color differences among the cytoplasmic and nuclear structures
of select parasitic forms
▪ Time-consuming
▪ excellent morphology of the intestinal protozoa.
▪ In some cases, the nuclear detail of these organisms is considered to
be stained clearer and sharper than when stained with trichrome.
▪ they do not detect oocysts of the coccidian parasites or spores of microsporidia.
▪ modified acid-fast stain, has become an important permanent stain procedure for the
detection of the oocysts of Cryptosporidium, as well as those of Isospora and
Cyclospora.
▪ has been developed that incorporates a carbol fuchsin step;
▪ this allows for the detection of acid-fast parasites in addition to the
other protozoa normally recovered using the iron hematoxylin stain.
7. The permanent stained smear is critical for detection of helminth eggs and larvae.
A. True
B. False
7. The permanent stained smear is critical for detection of helminth eggs and larvae.
A. True
B. False
1.Stool Culture Methods
Copro culture
- Positive stools are mixed with moistened soil or granulated charcoal.
- This simulates environmental conditions in nature.
- Larvae are harvested using the Baermann procedure
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▪ Use of test tubes and filter paper strips.
▪ Positive stool is applied to the filter paper and placed into a test tube
with about 7cc of boiled or distilled water.
▪ Filariform larvae will generally moves toward downwards against the
upward capillary movement of water, therefore be recovered from the
water at the bottom of the tube.
▪ Strongyloides larvae may instead move upwards and accumulate at
the upper end of the filter paper strip.
▪ Correlate the severity of clinical disease with the intensity of infection or worm burden
▪ Also done with to assess the efficacy of anthelminthics and the reduction of worm
burden following treatment.
3.1 Kato Katz Method
▪ Uses a measured amount of stool which has been sieved through a wire mesh and
pressed under cellophane paper soaked in glycerin-malachite green solution
▪ Used for assessing the intensity of infection in schistosomiasis and common soil
transmitted helminthiases like ascariasis, trichuriasis and hookworm infection.
▪ Consistency of the stool is the main determinant for the sensitivity of
this technique.
▪ For the sensitivity of this technique, some drier stools yield higher egg
counts than moist ones.
▪ Can only be done on fresh formed stools and not on liquid and
preserved samples.
1. Duodenal material
- Specimen may be collected by nasogastric intubation or by the enteric
capsule test (Enterotest)
- Trophozoites must be examined promptly in duodenal fluid because it is
easily disintegrate.
- The enterotest is the simpler method for collecting duodenal material without
requiring intubation.
▪ A gelatin capsule that contains a coiled length of yarn should be swallowed by the
patient.
▪ The capsule dissolves in the stomach and the weighted string is carried to the
duodenum.
▪ free end of the string is attached to the patient’s neck or cheek with tape.
▪ After a 4-hour incubation period, the yarn is pulled back out of the patient.
▪ The bile stained mucous material brought up on the string is then examined
microscopically via wet preps and, if necessary, permanent stains.
▪ often helpful for detecting E. histolytica.
▪ Material from ulcers obtained by aspiration or scraping should be
examined by direct wet preparations and permanent stains.
▪ Coccidian parasites and microsporidia may also be recovered.
▪ Samples suspected to contain amebae are best processed using
surgical pathology methods.
▪ is the specimen of choice for the detection of Enterobius vermicularis
(pinworm) eggs.
▪ otherwise known as the Graham technique.
▪ Morning specimen is ideal time to collect the sample. ▪
▪ To rule out a pinworm infection, a total 5 specimens should be collected
daily.
9. From which area can the Enterotest be used to collect specimens?
A. Duodenum
B. Sigmoid colon
C. Stomach
D. Perianal area
9. From which area can the Enterotest be used to collect specimens?
A. Duodenum
B. Sigmoid colon
C. Stomach
D. Perianal area
1. Blood
Blood Parasites that may recovered in the blood:
1. Leishmania donovani
2. Trypanosoma spp.
3. Plasmodium
4. Babesia spp.
5. Microfilaria
Methods
1. Wet/fresh preparation
2. Stained smears
3. Capillary tube method
4. Knott’s Concentration
5. Membrane Filtration
6. Culture
1. Wet/fresh preparation
▪ some parasites (e.g., Trypanosoma spp., microfilariae) that can be
detected by observing motility under low- and high-power magnification.
▪ species identification is not possible for this method.
2. Stained smears
▪ Thick smear are prepared from 2-3 small drops of blood which are mixed and
spread with continuous movement over an area which is about 2m in
diameter.
▪ Films are then thoroughly dried and then hemoglobinized prior to staining.
▪ Thin smears are prepared in such a way that they are thick at on end and thin
and feathery at other end.
▪ Streaks and holes should be avoided in the film and clean slides and spreader
are used.
▪ After air-drying, slides are fixed with methanol before staining.
▪ Thick smears are used in the demonstration of microfilariae
and rapid diagnosis of malarial infection.
▪ The capillary tube can be broken down at the area of the white cell
layer after centrifugation of the capillary tube.
▪ White cell layer can be spread and stained either with Giemsa or
Wright’s stain.
▪ Makes use of a capillary tube which is precoated with acridine orange and
potassium oxalate.
▪ DNA of the parasites takes up the acridine orange stain causing fluorescence
among the non-fluorescing red blood cells
s
▪ Useful in the demonstration of malaria parasites, microfilariae, trypanosomes
and Babesia.
4. Knott’s Concentration
▪ designed to concentrate blood specimens suspected of containing low
numbers of microfilariae.
▪ 1mL of fresh or anticoagulated blood is drawn up into the syringe and lyzed by
adding 10mLof distilled water.
▪ The lyzed blood is then passed through the Swinney membrane filter where
microfilariae will be recovered.
▪ The membrane filter can be examined like a wet smear preparation or may be
dried, fixed and then stained.
6. Culture
▪ Specimens submitted for culture can be blood, bone marrow, and tissue.
▪ Penicillin is added to the medium if the specimen originates from a source that
may contain bacteria.
▪ For the diagnosis of amebic conditions and African sleeping sickness.
▪ Must be examined promptly for the motility of the parasites
▪ Parasites found in the CSF:
1. Naegleria fowleri
2. Acantamoeba spp.
3. Trypanosoma spp. Trypomastigotes “NATToMiTE”
4. Toxoplasma gondii
5. Microsporidia
6. Taenia solium cysticercus larvae
7. Echinococcus spp.
▪ If Naegleria or Acantamoeba are suspected of being potential
pathogens, the specimen can be cultured on non-nutrient agar seeded
with Escherichia coli.
▪ The plate is then examined for evidence of the amebae feeding on the
bacteria.
1. Fluid present in cysts
2. Aspirates
3. Peritoneal fluid
4. Pleural fluid
5. Bronchial washings
* All these samples may be examined using wet preps and/or permanent
stains.
▪ Specimen should be collected early in the morning.
▪ Saliva is not appropriate for examination
▪ May be examined directly via wet preps and/or concentrated using N-
acetylcysteine.
▪ Wet preps and permanent stains
▪ Paragonimus westermani
▪ Strongyloides stercoralis
▪ E.histolytica, E. gingivalis, Ascaris lumbricoides and hookworms
▪ recommended for the recovery of a number of parasites, including
intracellular organisms such as Leishmania spp. and T. gondii.
▪ Surgical removal of the specimen
▪ Preparation of histologic tissue sections
▪ Impression smears
Nasal discharge
▪ Naegleria fowleri
▪ Useful in the detection of Onchocerca volvulus
▪ skin snips may be made using one of two collection techniques.
▪ The objective of both procedures is to obtain skin fluid without bleeding
▪ other technique uses a razor blade with which a small cut into the skin
is made.
▪ E. histolytica
▪ T. vaginalis
▪ Leishmania spp.
▪ T. cruzi
▪ T. gondii
▪ Appropriate specimens from patients suspected of suffering from
Leishmania and Trypanosoma and Toxoplasma
▪ Mice
▪ Guinea pigs
▪ Hamsters