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ROL 2012 Szommer PDF
ROL 2012 Szommer PDF
DOI 10.1007/s11030-012-9357-2
FULL-LENGTH PAPER
Received: 21 September 2011 / Accepted: 9 January 2012 / Published online: 26 January 2012
© Springer Science+Business Media B.V. 2012
Abstract An efficient and convenient solution-phase the market in the foreseeable future. Concerns about environ-
synthesis of a 1H -1,2,4-triazole library with potential agro- mental pollution, resistance of pests to chemical control, and
chemical activity is reported employing microwave-assisted toxic residual effects of chemical pesticides, however, are
organic synthesis (MAOS) and continuous-flow microfluidic the driving force for the research and development of novel,
synthetic methods starting from commercially available 3,5- more potent and less toxic agrochemicals with environmental
dibromo-1H -1,2,4-triazole (1). MAOS was used for the syn- sustainability.
thesis of 5-amino-3-bromo-1,2,4-triazole analogs 3 and for 1H -1,2,4-Triazole derivatives have widely been investi-
their 3-aryl derivatives 4 via Suzuki–Miyaura coupling with gated for anticonvulsant and plant growth regulatory activ-
polymer-supported catalyst. A microfluidic hydrogenation ities, and in particular, disubstituted 1,2,4-triazole derivatives
reactor integrated into an automated parallel synthesis plat- showed antifungal, insecticidal, and herbicidal properties
form was built and utilized for the reductive dehalogenation [2–7]. 1,2,4-Triazole derivatives play an important role in
reactions providing 5-aminotriazoles (5). agrochemistry, and there have been several triazole herbi-
cides (e.g., amitrole, cafenstrole, epronaz, flupoxam) and
Keywords Microwave-assisted organic synthesis · fungicides (e.g., difenoconazole, fenbuconazole, myclobu-
Continuous-flow hydrogenation · 1H -1,2,4-triazole tanil, propiconazole, tebuconazole, tetraconazole, triadime-
fon, and triticonazole) introduced to the market. The triazole
core, hence, can be considered as a privileged substructure.
Introduction Inspired by the above observations, we devised the synthe-
sis of di- and trisubstituted 5-amino-1H -1,2,4-triazole
Chemical pest control is essential for worldwide food pro- libraries with potential herbicide and fungicide activities.
duction and public health. Although the usage of biopesti- Herein we report the convenient and efficient synthesis of
cides is continuously growing, it covers only approximately di- and trisubstituted aminotriazole libraries utilizing micro-
2% of the global pesticide market as of today [1]. Thus, it is wave-assisted organic synthesis (MAOS) and continuous-
expected that chemical pesticides will continue to dominate flow synthesis techniques (Scheme 1).
Zarguil et al. [8] described the synthesis of a series of 3-
substituted-5-amino-1H -1,2,4-triazoles (4) from imidates 6
and 7 (Scheme 2). Incorporation of R1 and R4 diversity ele-
This manuscript is dedicated to Professor Árpád Furka on the ments was well documented; however, only aniline or amino
occasion of his 80th birthday.
groups were reported for the substitution at the 5th position
T. Szommer · A. Lukács · J. Kovács · M. J. Szabó · J. Gerencsér (B) of the 1,2,4-triazole ring system.
AMRI Hungary Zrt., Záhony u. 7., Budapest, 1035, Hungary While this reported method appeared to be amenable to
e-mail: janos.gerencser@amriglobal.com parallel chemistry, it would not give rise to the wide range
of ring substitution that we wanted to prepare. We there-
M. G. Hoffmann · M. H. Schmitt
Bayer CropScience AG, Industriepark Höchst, G 836, fore devised a linear and sequential synthetic method for
65926 Frankfurt am Main, Germany the introduction of variable residues onto the triazole ring
123
82 Mol Divers (2012) 16:81–90
Br Br Br
N N N
R2
N N N N
N Br N Br N
R3 R1 H
R1
3 2 1
123
Mol Divers (2012) 16:81–90 83
NH2
N N
Br Br H N
N Br
9{5}
N N N N N
Conditions
2{1} 3{1,5}
123
84 Mol Divers (2012) 16:81–90
Me
10{1} 10{2} 10{3} 10{4}
OH OH OH OH
NC B B MeO B MeO B
OH OH OH OH
MeO MeO
10{5} 10{6} 10{7} 10{8}
OH OH OH OH
Cl B Me B F B F B
OH OH OH OH
Me Me OMe
Cl
10{9} 10{10} 10{11} 10{12}
OH OH OH OH
Cl B F3CO B B B
OH OH OH OH
OMe Me2N N
H
10{13} 10{14} 10{15} 10{16}
OH OH OH OH
B B O B B
N OH OH OH OH
O MeO N
123
Mol Divers (2012) 16:81–90 85
N N N N
Conditions
3{2,9} F 4{2,9,1} F
Number of compounds
3
2a Cs2 CO3 t Bu P
3 A 120 ◦ Ce 40 min 21% 100
88
94
.0
.5
.0
.5
.0
.5
.0
.5
.0
-2
-3
-3
-4
-4
-5
-5
-6
-7
-6
0
5
5
2.
2.
6.
6.
3.
3.
4.
4.
5.
5.
a DME/EtOH/water; b Toluene/EtOH/water; c A: 5 mol% Pd2 (dba)3 , B: cLogP
5 mol% Pd(OAc)2 , C: 5 mol% PdCl2 (Ph3 P)2 , D: 5 mol% Pd(Ph3 P)4 ,
E: 10 mol% PS–Pd–Ph3 P; d Conventional heating; e The reactions were 250
carried out in a monomode cavity microwave instrument; f Isolated yield
after HPLC purification 197
Number of compounds
200
150
127
formation of the unwanted by products was observed across
93
the reactor plate and found to be independent from the posi- 100
tion of the reaction vials. Thus, we had to modify the condi-
50 40
tions to suppress the rate of the—this time unwanted—side
reaction. Since the room for improvement was very narrow 1 0
0
in the multimode instrument due to temperature and pressure
00
50
00
50
00
50
restrictions (maximum 160 ◦ C and maximum 4 bar, respec-
-3
-5
-3
-4
-4
-5
0
0
0
0
0
25
50
30
35
40
45
0
0
0
0
-6
-7
-8
-4
-5
-2
-3
-1
30
40
5
10
20
50
60
70
123
86 Mol Divers (2012) 16:81–90
Me
Br F 3CO Br
Br Br
F3CO tBu
Me
8{11} 8{12} 8{13} 8{14}
F
MeO F
Br Me Br
Br
MeO MeO
OMe
8{15} 8{16} 8{17}
library synthesis and subsequent HPLC purification efforts nient anisole/DBU system, which allowed an easier work-
resulted in 458 compounds fulfilling both the purity and the up procedure and thus more amenable to parallel synthesis.
weight criteria providing the samples in at least 5 mg and Under these conditions, even the less nucleophilic amines
in >85% purity as assessed by HPLC-MS analysis. The reacted with bromide 3 giving the corresponding product.
cLogP (octanol/water partition coefficients (cLogP) were Using this more general method, we launched 322 reactions
calculated using Chemaxon JChem software version 5.3.8), between dibromo derivatives 2{1–17} and the
molecular weight and produced quantity distributions are extended list of amines 8{1–34} from which after HPLC
shown in Fig. 2. purification a total of 256 5-amino-1H -1,2,4-triazoles 3{1–
In addition to the above described trisubstituted triazole 17, 1–34} were successfully isolated in at least 15 mg quan-
chemset 4, we developed a method for the synthesis of a 1,5- tity and in higher than 85% purity as assessed by LCMS
disubstituted triazole library (5). For this purpose, the syn- analysis (Scheme 7). The purified samples of 3 were then
thesized chemset 3 looked to be a good starting point because subjected to reductive dehalogenation.
having developed methodology to prepare chemset 3, this key The use of automated flow-through hydrogenation sys-
intermediate could be used as a branch-point to initiate the tems was reported in the literature [12,13]. We applied the
synthesis of this new library by the reductive dehalogenation set-up successfully implemented previously in our laboratory
of 3. Thus, an additional ten benzyl halides were introduced, [12]. The hydrogenation system for the dehalogenation pro-
extending the list of electrophiles to 17 (Fig. 3). cess was made up of an H-CubeTM , a Tecan CAVRO two-arm
However, the applied method for the synthesis of chemset injector–collector, a Knauer HPLC pump, and a VICI Val-
3 was not amenable to high-throughput parallel chemistry on co 6-port valve (Fig. 5) [12]. Starting in position A of the
small scale, as the high-pressure vessels were too large in vol- Valco 6-way valve, the HPLC pump controlled a continu-
ume for milligram scale synthesis. Thus, for the synthesis of ous stream of solvent through the injector and then into the
the disubstituted triazole series 5 it was necessary to develop reactor. Meanwhile the CAVRO system injected a solution
a method that was amenable to a larger set including less of the substrate into the valve’s injection loop. The injector
nucleophilic amines than previously used (Fig. 4). Library valve (Fig. 5) switched to position B which altered the flow
design was done using the Chemaxon Reactor module inte- of solvent from the reactor to the injection loop, pushing the
grated with AMRI’s in-house developed chemoinformatic injected substrate out of the loop and into the reactor. In the
system. reactor, hydrogen was mixed with the substrate and passed
The reactants were adsorbed onto basic alumina and the through a stainless steel column packed with 10% palladium
obtained solid mixture was irradiated in a Milestone micro- on charcoal. The hydrogenated product continuously flowed
wave instrument equipped with a CombiCHEM rotor at out of the hydrogenation column into a collection vial which
160 ◦ C for 4 × 30 min. By applying basic alumina as reaction was controlled by the second arm of the CAVRO robotic
media, we were able to replace the otherwise very inconve- station. The fraction collector arm positioned itself over a
123
Mol Divers (2012) 16:81–90 87
O NH2
NH 2 NH2 NH2
9{1} – 9{11}
Me H
OMe NH F NH MeO N
Me NH
NH2 N N
MeO Me
Me
NH
Me NH 2 F 3C NH2 N NH 2
N N NH 2
Me
O NH NH 2
NH 2 NH2
Me2N
R2 R2
N N N
N Br H 2, Pd/C
R3 R3
N N N N
R1 H-Cube: R1
60 bar, rt, 1.5 mL/min
3{1-17,1-34} 5{1-17,1-34}
123
88 Mol Divers (2012) 16:81–90
collection vial and collected all the eluted product and sol- Avance II instrument at 100 MHz. The measurements were
vent washing into the vial. While this process took place, the done at room temperature and chemical shifts (δ) are given
valve positions were reset back to position A, the injection in ppm with coupling constants and J values reported in
needle proceeded into a washing program and the system was Hertz. For the calibration of the spectra solvent signal and
ready for the next sample-injection. TMS signal were used in case of chloroform-d and solvent
Evaporation of the solvent followed by HPLC purifica- signal was used in case of DMSO-d6 . The HPLC-MS mea-
tion yielded 192 compounds meeting the pre-set quality and surements were carried out using a Waters Acquity UPLC
quantity criteria, providing the samples in at least 5 mg and in instrument with BEH C18, 2.1 × 50 mm, 1.7 µm column
higher than 85% purity. The cLogP, molecular weight and using a gradient program which was adjusted according to
produced quantity distributions of chemset 5 are shown in the compound properties; Eluent I: acetonitrile/water = 5/95
Fig. 6. with 20 mM ammonium formate buffer, pH 7.4, Eluent II:
acetonitrile/water = 80/20 with 20 mM ammonium formate
buffer, pH 7.4. The preparative HPLC purifications were per-
Conclusion
formed on a LaChrom HPLC system (Merck–Hitachi) and
a Waters HPLC-MS mass directed instrument with a C18
Herein, we report an efficient and convenient synthesis of
reverse phase column using a solvent gradient program which
a library of nearly 500 1-alkyl-3-aryl-5-amino-1H -1,2,4-tri-
was adjusted according to the logP; Method A: eluent I:
azoles (4) using microwave-assisted synthetic methods by
water, eluent II: acetonitrile; Method B: eluent I: water, elu-
sequential introduction of the variable substituents starting
ent II: acetonitrile/trifluoroacetic acid, 99.9/0.1; in both cases
from 3,5,dibromo-1H -1,2,4-triazole (1). Nearly 200 1-
eluent III: acetonitrile/2-propanol/formic acid 70/30/0.1 was
alkyl-5-amino-1H -1,2,4-triazoles (5) were successfully syn-
used for washing the column. The high resolution mass spec-
thesized from bromide intermediate 3 using continuous-flow
trometric data were obtained using Waters Q-TOF Premier
hydrogenation technique integrated into the parallel synthe-
LCMS system by electrospray ionization. Microwave-
sis platform.
irradiated nucleophilic substitution reactions were performed
using a Milestone MicroSYNTH instrument equipped either
Experimental with an HPR 10/1000 for intermediate synthesis, or a
CombiCHEM rotor for small scale parallel synthesis. The
General methods and instruments reaction vessels were standard Milestone HPR vessels and
4-mL Milestone microwave vials with silicone/TEF cover.
All reagents and solvents were used without further puri- A CEM Explorer-24 instrument was used for the Suzuki–
fication. Thin-layer chromatography (TLC) was performed Miyaura coupling library synthesis step. The reaction vessels
using silica gel 60 F254 (Merck) and visualized by UV light were 10-mL CEM microwave vials with silicone/TEF cover.
(254 nm). Column chromatography was carried out using An H-CubeTM instrument integrated with a PC-controlled
silica gel 60 unless otherwise specified. Proton nuclear mag- Cavro RSP 9000 liquid handler was used for the automatic
netic resonance spectra were recorded on a Bruker Avance sequential hydrogenation reactions. The liquid-liquid extrac-
II instrument at 400 MHz or on a Bruker DRX instrument at tions for the libraries were carried out in screw-threaded 5-
300 MHz. The 13 C NMR spectra were recorded on a Bruker mL tare weighed standard glass vials with polypropylene
123
Mol Divers (2012) 16:81–90 89
45
3–8 h. The solvent was evaporated under reduced pressure,
40 38 38
the residue was dissolved in ethyl acetate (250 mL), washed
30 with water (100 mL), 3% aq. HCl (60 mL) and 5% aq.
22 NaHCO3 solution (60 mL), respectively. The organic phase
20 18
13
was dried over Na2 SO4 , filtered, and evaporated under
10
reduced pressure. The crude product was purified either by
1
3 3 crystallization from n-hexane or by flash chromatography
0 (silica gel, chloroform).
.5
.0
.5
.0
.0
.5
.5
.0
.0
.5
-2
-3
-4
-5
-1
-2
-3
-4
-5
-6
5
0
0
5
0
0
1.
2.
4.
1.
2.
3.
3.
4.
5.
5.
clogP General procedure for the synthesis of chemset 3
80 (9.4 mL, 9.6 g, 63 mmol, 1.4 equiv) was dispensed into the
70
solution. The mixture was stirred at room temperature for
60
15 min and triazole 2 (15 mmol) was added in one portion.
50
41 The resulting reaction mixture was transferred to a Milestone
40
HPR vial and microwave irradiated at 160 ◦ C for 2 × 60 min.
30
20
The solvent was removed in vacuo, the residue was dis-
10 7 6 solved in chloroform (50 mL), washed with water (70 mL),
0 3% aq. citric acid (50 mL) and water (50 mL), respectively.
The organic phase was dried over Na2 SO4 or MgSO4 , fil-
0
0
25
30
35
40
45
Molecular Weight tered, and evaporated under reduced pressure. The crude
product was purified by flash chromatography (silica gel,
100 chloroform).
90
90 Procedure B (library synthesis): Basic aluminum oxide
81
Number of compounds
80
(250 mg/vial) was weighed into Milestone CombiCHEM
70
microwave vials to which a solution of 2 (1 mL/vial; 0.5 M
60
solution in EtOH) was dispensed. The resulting suspension
50 44
40
was shaken for 10 min and the reactant amines (9 equiv) were
30
added to the mixtures. The solvent was removed in vacuo and
20
18 the resulting solid reaction mixtures were microwave irra-
10 diated in a Milestone microwave instrument at 160 ◦ C for
1
0 4 × 30 min. The reaction mixtures were diluted with DCE
(2.5 mL/vial) and filtered into 5-mL glass vials. The alumi-
0
0
-1
-3
-4
-2
-5
5
10
20
30
40
coated plastic caps and NR/TEF septa. Edmund Bühler shak- General procedure for the synthesis of chemset 4
ers were used for the proper mixing of phases during extrac-
tion and mixing of reactants. A TECAN Genesis 150 robotic To PS–Pd[P(Ph)3 ]4 (1 mol%) in a 10-mL CEM microwave
system was used for liquid handling, for phase separation vial was dispensed 3 (300 µL of a 0.5 M DME solution,
during extraction, and for analytical sampling. 0.15 mmol), followed by the appropriate boronic acid 9 (840
µL, 0.25 M EtOH solution, 0.21 mmol, 1.4 equiv) and then
General procedure for the synthesis of chemset 2 aq. potassium carbonate (500 µL, 0.45 M, 0.23 mmol, 1.5
equiv). The reaction mixture was microwave irradiated in
A mixture of 3,5-dibromo-1H -1,2,4-triazole (1, 300 mmol), a CEM Explorer microwave instrument at 170 ◦ C for 15 min.
DIPEA (45 mL, 33.0 g, 306 mmol, 1.02 equiv) and the req- The catalyst resin was removed by filtration, the filtrate
123
90 Mol Divers (2012) 16:81–90
123