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methotrexate
A:LYS63:HZ3 - N:UNK1:O 3.07 Hydrogen Bond Conventional Hydrogen Bond A:LYS63:HZ3
A:ASN64:HD21 - N:UNK1:O 2.40 Hydrogen Bond Conventional Hydrogen Bond A:ASN64:HD21
A:ASN64:HD22 - N:UNK1:O 2.27 Hydrogen Bond Conventional Hydrogen Bond A:ASN64:HD22
A:ARG70:HH12 - N:UNK1:O 2.25 Hydrogen Bond Conventional Hydrogen Bond A:ARG70:HH12
A:ARG70:HH22 - N:UNK1:O 2.13 Hydrogen Bond Conventional Hydrogen Bond A:ARG70:HH22
N:UNK1:H - A:TYR121:OH 2.45 Hydrogen Bond Conventional Hydrogen Bond N:UNK1:H
N:UNK1:HN - A:VAL115:O 3.09 Hydrogen Bond Conventional Hydrogen Bond N:UNK1:HN
N:UNK1:HN - A:SER59:OG 2.22 Hydrogen Bond Conventional Hydrogen Bond N:UNK1:HN
A:THR56:HG22 - N:UNK1 2.72 Hydrophobic Pi-Sigma A:THR56:HG22
A:PHE34 - N:UNK1 4.16 Hydrophobic Pi-Pi Stacked A:PHE34
A:PHE31 - N:UNK1 5.35 Hydrophobic Pi-Pi T-shaped A:PHE31
A:ILE16:C,O;GLY17:N - N:UNK1 4.47 Hydrophobic Amide-Pi Stacked A:ILE16:C,O;GLY17:N
N:UNK1 - A:ILE16 5.08 Hydrophobic Pi-Alkyl N:UNK1
N:UNK1 - A:ILE60 5.25 Hydrophobic Pi-Alkyl N:UNK1
Methylbenzoprim
N:UNK1:H - A:GLU30:OE1 1.97 Hydrogen Bond Conventional Hydrogen Bond N:UNK1:H
N:UNK1:H - A:ILE7:O 2.34 Hydrogen Bond Conventional Hydrogen Bond N:UNK1:H
N:UNK1:HN - A:GLU30:OE2 1.91 Hydrogen Bond Conventional Hydrogen Bond N:UNK1:HN
N:UNK1:C - A:THR56:OG1 3.56 Hydrogen Bond Carbon Hydrogen Bond N:UNK1:C
A:PHE34 - N:UNK1 4.35 Hydrophobic Pi-Pi T-shaped A:PHE34
A:ALA9 - N:UNK1:C 3.14 Hydrophobic Alkyl A:ALA9
N:UNK1:C - A:LEU22 3.93 Hydrophobic Alkyl N:UNK1:C
A:TRP24 - N:UNK1:C 4.80 Hydrophobic Pi-Alkyl A:TRP24
A:TRP24 - N:UNK1:C 5.20 Hydrophobic Pi-Alkyl A:TRP24
A:PHE31 - N:UNK1:C 5.20 Hydrophobic Pi-Alkyl A:PHE31
N:UNK1 - A:ALA9 3.75 Hydrophobic Pi-Alkyl N:UNK1
N:UNK1 - A:LEU22 4.97 Hydrophobic Pi-Alkyl N:UNK1
N:UNK1 - A:LYS55 5.41 Hydrophobic Pi-Alkyl N:UNK1
Nolatrexate
N:UNK1:H - A:THR56:OG1 2.67 Hydrogen Bond Conventional Hydrogen Bond N:UNK1:H
N:UNK1:HN - A:VAL115:O 2.71 Hydrogen Bond Conventional Hydrogen Bond N:UNK1:HN
N:UNK1:HN - A:TYR121:OH 2.37 Hydrogen Bond Conventional Hydrogen Bond N:UNK1:HN
N:UNK1:C - A:PHE34 3.95 Hydrophobic Pi-Sigma N:UNK1:C
A:PHE31 - N:UNK1 5.46 Hydrophobic Pi-Pi T-shaped A:PHE31
A:ALA9 - N:UNK1:C 4.41 Hydrophobic Alkyl A:ALA9
A:PHE31 - N:UNK1:C 5.38 Hydrophobic Pi-Alkyl A:PHE31
N:UNK1 - A:ILE60 4.95 Hydrophobic Pi-Alkyl N:UNK1
N:UNK1 - A:ALA9 5.01 Hydrophobic Pi-Alkyl N:UNK1
Pemetrexed
A:ASN64:HD21 - N:UNK1:O 2.48 Hydrogen Bond Conventional Hydrogen Bond A:ASN64:HD21
A:ARG70:HH22 - N:UNK1:O 2.21 Hydrogen Bond Conventional Hydrogen Bond A:ARG70:HH22
N:UNK1:H - A:ILE16:O 2.89 Hydrogen Bond Conventional Hydrogen Bond N:UNK1:H
A:GLN35:HA - N:UNK1:O 3.08 Hydrogen Bond Carbon Hydrogen Bond A:GLN35:HA
A:PHE34 - N:UNK1 4.06 Hydrophobic Pi-Pi Stacked A:PHE34
N:UNK1 - A:ILE16 5.29 Hydrophobic Pi-Alkyl N:UNK1
N:UNK1 - A:LEU22 5.50 Hydrophobic Pi-Alkyl N:UNK1
N:UNK1 - A:ILE60 5.27 Hydrophobic Pi-Alkyl N:UNK1
Piritrexim
N:UNK1:H - A:ALA9:O 2.16 Hydrogen Bond Conventional Hydrogen Bond N:UNK1:H
N:UNK1:HN - A:VAL115:O 2.52 Hydrogen Bond Conventional Hydrogen Bond N:UNK1:HN
N:UNK1:HN - A:VAL115:O 2.31 Hydrogen Bond Conventional Hydrogen Bond N:UNK1:HN
N:UNK1:C - A:SER59:OG 3.71 Hydrogen Bond Carbon Hydrogen Bond N:UNK1:C
A:PHE31 - N:UNK1 3.81 Hydrophobic Pi-Pi Stacked A:PHE31
A:ALA9 - N:UNK1:C 3.78 Hydrophobic Alkyl A:ALA9
N:UNK1:C - A:LEU22 4.61 Hydrophobic Alkyl N:UNK1:C
Raltitrexed
A:GLY20:HN - N:UNK1:O 1.96 Hydrogen Bond Conventional Hydrogen Bond A:GLY20:HN
N:UNK1:H - A:ILE16:O 2.54 Hydrogen Bond Conventional Hydrogen Bond N:UNK1:H
N:UNK1:H - N:UNK1:O 2.28 Hydrogen Bond Conventional Hydrogen Bond N:UNK1:H
A:GLY17:HA2 - N:UNK1:O 2.91 Hydrogen Bond Carbon Hydrogen Bond A:GLY17:HA2
A:SER59:HB2 - N:UNK1:O 2.63 Hydrogen Bond Carbon Hydrogen Bond A:SER59:HB2
A:GLY117:HA1 - N:UNK1:O 2.62 Hydrogen Bond Carbon Hydrogen Bond A:GLY117:HA1
N:UNK1:C - A:ALA9:O 3.39 Hydrogen Bond Carbon Hydrogen Bond N:UNK1:C
A:PHE34 - N:UNK1 4.16 Hydrophobic Pi-Pi Stacked A:PHE34
A:PHE34 - N:UNK1 3.70 Hydrophobic Pi-Pi Stacked A:PHE34
N:UNK1 - A:ILE60 5.49 Hydrophobic Pi-Alkyl N:UNK1
N:UNK1 - A:ILE16 4.52 Hydrophobic Pi-Alkyl N:UNK1
A:GLY20:HN - N:UNK1:O 3.09 Hydrogen Bond Conventional Hydrogen Bond A:GLY20:HN
N:UNK1:H - A:GLY20:O 2.61 Hydrogen Bond Conventional Hydrogen Bond N:UNK1:H
N:UNK1:H - N:UNK1:O 2.42 Hydrogen Bond Conventional Hydrogen Bond N:UNK1:H
N:UNK1:H - A:THR56:OG1 2.53 Hydrogen Bond Conventional Hydrogen Bond N:UNK1:H
N:UNK1:H - N:UNK1:O 2.27 Hydrogen Bond Conventional Hydrogen Bond N:UNK1:H
A:GLY17:HA2 - N:UNK1:O 2.60 Hydrogen Bond Carbon Hydrogen Bond A:GLY17:HA2
A:GLY20:HA1 - N:UNK1:O 2.94 Hydrogen Bond Carbon Hydrogen Bond A:GLY20:HA1
A:GLY116:HA2 - N:UNK1:O 2.58 Hydrogen Bond Carbon Hydrogen Bond A:GLY116:HA2
A:GLY117:HA1 - N:UNK1:O 2.55 Hydrogen Bond Carbon Hydrogen Bond A:GLY117:HA1
A:PHE34 - N:UNK1 4.19 Hydrophobic Pi-Pi Stacked A:PHE34
A:PHE34 - N:UNK1 3.66 Hydrophobic Pi-Pi Stacked A:PHE34
N:UNK1 - A:ILE60 5.24 Hydrophobic Pi-Alkyl N:UNK1
N:UNK1 - A:ILE16 5.20 Hydrophobic Pi-Alkyl N:UNK1
Talotrexin
A:ALA9:HN - N:UNK1:O 1.80 Hydrogen Bond Conventional Hydrogen Bond A:ALA9:HN
A:TYR121:HH - N:UNK1:O 2.81 Hydrogen Bond Conventional Hydrogen Bond A:TYR121:HH
N:UNK1:H - A:SER59:OG 2.46 Hydrogen Bond Conventional Hydrogen Bond N:UNK1:H
N:UNK1:H - A:VAL115:O 1.96 Hydrogen Bond Conventional Hydrogen Bond N:UNK1:H
N:UNK1:H - A:PHE31:O 2.53 Hydrogen Bond Conventional Hydrogen Bond N:UNK1:H
N:UNK1:HN - A:PHE31:O 2.67 Hydrogen Bond Conventional Hydrogen Bond N:UNK1:HN
A:VAL8:HA - N:UNK1:O 2.68 Hydrogen Bond Carbon Hydrogen Bond A:VAL8:HA
A:SER59:HB2 - N:UNK1:O 2.88 Hydrogen Bond Carbon Hydrogen Bond A:SER59:HB2
A:GLU30:OE2 - N:UNK1 4.68 Electrostatic Pi-Anion A:GLU30:OE2
A:PHE31 - N:UNK1 4.52 Hydrophobic Pi-Pi Stacked A:PHE31
A:PHE31 - N:UNK1 5.25 Hydrophobic Pi-Pi Stacked A:PHE31
N:UNK1 - N:UNK1 3.79 Hydrophobic Pi-Pi Stacked N:UNK1
A:PHE34 - N:UNK1 4.86 Hydrophobic Pi-Pi T-shaped A:PHE34
N:UNK1 - A:PRO61 5.21 Hydrophobic Pi-Alkyl N:UNK1
N:UNK1 - A:LEU22 5.40 Hydrophobic Pi-Alkyl N:UNK1
N:UNK1 - A:ILE60 5.30 Hydrophobic Pi-Alkyl N:UNK1
N:UNK1 - A:ALA9 4.60 Hydrophobic Pi-Alkyl N:UNK1
N:UNK1 - A:LEU22 5.21 Hydrophobic Pi-Alkyl N:UNK1
Initial
H-Donor A:GLU30:OE1 H-Acceptor HB H(NH-Drug) - O (GLU30)
H-Donor A:ILE7:O H-Acceptor H(NH-Drug) - O (GLU30)
H-Donor A:GLU30:OE2 H-Acceptor H(NH-Drug) - O (ILE7)
H-Donor A:THR56:OG1 H-Acceptor
Pi-Orbitals N:UNK1 Pi-Orbitals
Alkyl N:UNK1:C Alkyl
Alkyl A:LEU22 Alkyl C-H C(Drug) - O(THR56)
Pi-Orbitals N:UNK1:C Alkyl
Pi-Orbitals N:UNK1:C Alkyl
Pi-Orbitals N:UNK1:C Alkyl π-π (T) PHE34 - Pyrimidine
Pi-Orbitals A:ALA9 Alkyl π-π (S)
Pi-Orbitals A:LEU22 Alkyl R-R ALA9 - C(Drug)
Pi-Orbitals A:LYS55 Alkyl C(Drug) - LEU22
π-R TRP24 - C(Drug)
H-Donor N:UNK1:O H-Acceptor TRP24 - C(Drug)
H-Donor A:ASP21:O H-Acceptor PHE31 - C(Drug)
H-Donor A:ASP21:O H-Acceptor Pyrimidine - ALA9
H-Donor A:GLU30:OE1 H-Acceptor Benzene - LEU22
H-Donor A:GLU30:OE2 H-Acceptor Benzene - LYS55
Pi-Orbitals N:UNK1 Pi-Orbitals
Pi-Orbitals A:LEU22 Alkyl
Initial
H-Donor A:THR56:OG1 H-Acceptor HB H (NH2-Drug) - O (THR56)
H-Donor A:VAL115:O H-Acceptor HN - O (VAL115)
H-Donor A:TYR121:OH H-Acceptor
C-H A:PHE34 Pi-Orbitals HN - OH (TYR121)
Pi-Orbitals N:UNK1 Pi-Orbitals π-σ C (Quinazoline) - PHE34
Alkyl N:UNK1:C Alkyl π-π (T) PHE31 - Pyridine
Pi-Orbitals N:UNK1:C Alkyl π-π (S)
Pi-Orbitals A:ILE60 Alkyl
Pi-Orbitals A:ALA9 Alkyl π-A
R ALA9 - C (Quinazoline)
H-Donor A:VAL115:O H-Acceptor π-R Pyridine - ILE60
H-Donor A:TYR121:OH H-Acceptor Quinazoline - ALA9
H-Donor A:VAL115:O H-Acceptor PHE31 - C (Quinazoline)
Negative N:UNK1 Pi-Orbitals
Pi-Orbitals N:UNK1 Pi-Orbitals
Pi-Orbitals N:UNK1 Pi-Orbitals
Pi-Orbitals N:UNK1:C Alkyl
Pi-Orbitals N:UNK1:C Alkyl
Pi-Orbitals A:LEU22 Alkyl
Initial
H-Donor N:UNK1:O H-Acceptor HB H (ASN64) - O (OH-Drug)
H-Donor N:UNK1:O H-Acceptor H (ARG70) - O (Drug)
H-Donor A:ILE16:O H-Acceptor H (NH-Drug) - O (ILE16)
H-Donor N:UNK1:O H-Acceptor
Pi-Orbitals N:UNK1 Pi-Orbitals
Pi-Orbitals A:ILE16 Alkyl C-H H (GLN35) - O (OH-Drug)
Pi-Orbitals A:LEU22 Alkyl π-π (S) PHE34 - Benzene
Pi-Orbitals A:ILE60 Alkyl π-R Pyrrole - ILE16
Pyrrole - LEU22
H-Donor A:VAL115:O H-Acceptor Benzene - ILE60
H-Donor N:UNK1:O H-Acceptor
H-Donor A:GLU30:OE2 H-Acceptor
Pi-Orbitals N:UNK1 Pi-Orbitals
Initial
H-Donor A:ALA9:O H-Acceptor HB H (NH2) - O (ALA9)
H-Donor A:VAL115:O H-Acceptor HN - O (VAL115)
H-Donor A:VAL115:O H-Acceptor HN - O (VAL115)
H-Donor A:SER59:OG H-Acceptor
Pi-Orbitals N:UNK1 Pi-Orbitals
Alkyl N:UNK1:C Alkyl
Alkyl A:LEU22 Alkyl C-H C (Drug) - O (SER59)
π-π (S) PHE31 - Benzene
H-Donor N:UNK1:O H-Acceptor
H-Donor A:GLU30:OE2 H-Acceptor π-π (T)
H-Donor A:VAL115:O H-Acceptor R ALA9 - C (Drug)
H-Donor A:GLU30:OE2 H-Acceptor C (Drug) - LEU22
Pi-Orbitals N:UNK1 Pi-Orbitals
Pi-Orbitals N:UNK1 Pi-Orbitals π-R
Alkyl A:ILE60 Alkyl
Pi-Orbitals N:UNK1:C Alkyl
Pi-Orbitals A:ILE60 Alkyl
Initial
H-Donor N:UNK1:O H-Acceptor HB H (ARG70) - O (Drug)
H-Donor N:UNK1:O H-Acceptor H (ARG70) - O (Drug)
H-Donor A:TYR121:OH H-Acceptor H (NH2) - OH (TYR121)
H-Donor N:UNK1:O H-Acceptor
C-H N:UNK1 Pi-Orbitals
Pi-Orbitals N:UNK1 Pi-Orbitals
Pi-Orbitals N:UNK1 Pi-Orbitals
Amide N:UNK1 Pi-Orbitals
Alkyl N:UNK1:C Alkyl
Alkyl A:LEU22 Alkyl C-H H (ARG32) - O (Drug)
Pi-Orbitals N:UNK1:C Alkyl
Pi-Orbitals A:ILE16 Alkyl
Pi-Orbitals A:ILE60 Alkyl
π-σ H (THR56) - Pteridine
H-Donor N:UNK1:O H-Acceptor π-π (S) PHE34 - Benzene
H-Donor A:LEU27:O H-Acceptor π-π (T) PHE31 - Benzene
H-Donor A:ASP145:OD2 H-Acceptor CONH-π (S) ILE16:C,O;GLY17 - Pteridine
H-Donor N:UNK1:O H-Acceptor R ALA9 - C (CH)
H-Donor A:GLU30:OE2 H-Acceptor C (CH-Drug) - LEU22
H-Donor A:GLU30:OE1 H-Acceptor
H-Donor N:UNK1:O H-Acceptor
H-Donor N:UNK1:O H-Acceptor π-R PHE31 - C (CH-Drug)
H-Donor N:UNK1:O H-Acceptor Pteridine - ILE16
Pi-Orbitals N:UNK1 Pi-Orbitals Benzene - ILE60
Alkyl A:ILE60 Alkyl
Alkyl A:LEU67 Alkyl
Pi-Orbitals N:UNK1:C Alkyl
Initial
H-Donor N:UNK1:O H-Acceptor HB HN (GLY20) - O (COOH)
H-Donor A:ILE16:O H-Acceptor H (NH) - O (ILE16)
H-Donor N:UNK1:O H-Acceptor H (COOH) - O (COOH)
H-Donor N:UNK1:O H-Acceptor
H-Donor N:UNK1:O H-Acceptor
H-Donor N:UNK1:O H-Acceptor
H-Donor A:ALA9:O H-Acceptor C-H O (SER59) - O (COOH)
Pi-Orbitals N:UNK1 Pi-Orbitals C (Drug) - O (ALA9)
Pi-Orbitals N:UNK1 Pi-Orbitals H (GLY17) - O (COOH)
Pi-Orbitals A:ILE60 Alkyl H (GLY117) - O (Drug)
Pi-Orbitals A:ILE16 Alkyl
H-Donor N:UNK1:O H-Acceptor π-π (S) PHE34 - Quinazoline
H-Donor A:GLY20:O H-Acceptor PHE34 - Quinazoline
H-Donor N:UNK1:O H-Acceptor π-R Quinazoline - ILE60
H-Donor A:THR56:OG1 H-Acceptor Thiophene - ILE16
H-Donor N:UNK1:O H-Acceptor
H-Donor N:UNK1:O H-Acceptor
H-Donor N:UNK1:O H-Acceptor
H-Donor N:UNK1:O H-Acceptor
H-Donor N:UNK1:O H-Acceptor
Pi-Orbitals N:UNK1 Pi-Orbitals
Pi-Orbitals N:UNK1 Pi-Orbitals
Pi-Orbitals A:ILE60 Alkyl
Pi-Orbitals A:ILE16 Alkyl
Initial
H-Donor N:UNK1:O H-Acceptor HB H (TYR121) - O (Drug)
H-Donor N:UNK1:O H-Acceptor H (NH) - O (SER59)
H-Donor A:SER59:OG H-Acceptor H (COOH) - O (VAL115)
H-Donor A:VAL115:O H-Acceptor H (NH2) - O (PHE31)
H-Donor A:PHE31:O H-Acceptor HN (Drug) - O (PHE31)
H-Donor A:PHE31:O H-Acceptor HN (ALA9) - O (Drug)
H-Donor N:UNK1:O H-Acceptor
H-Donor N:UNK1:O H-Acceptor
Negative N:UNK1 Pi-Orbitals
Pi-Orbitals N:UNK1 Pi-Orbitals
Pi-Orbitals N:UNK1 Pi-Orbitals C-H H (VAL8) - O (Drug)
Pi-Orbitals N:UNK1 Pi-Orbitals H (SER59) - O (COOH)
Pi-Orbitals N:UNK1 Pi-Orbitals π-A O (GLU30) - Benzene
Pi-Orbitals A:PRO61 Alkyl π-π (S) PHE31 - Pteridine
Pi-Orbitals A:LEU22 Alkyl PHE31 - Pteridine
Pi-Orbitals A:ILE60 Alkyl Benzene - Benzene
Pi-Orbitals A:ALA9 Alkyl π-π (T) PHE34 - N:UNK1
Pi-Orbitals A:LEU22 Alkyl π-R Pteridine - PRO61
Benzene - ILE60
H-Donor N:UNK1:O H-Acceptor Benzene - ALA9
H-Donor A:THR56:OG1 H-Acceptor Benzene - LEU22
H-Donor A:ASP145:OD1 H-Acceptor Benzene - LEU22
H-Donor A:ASP145:OD2 H-Acceptor π-σ
H-Donor A:ASP21:O H-Acceptor
C-H N:UNK1 Pi-Orbitals
Pi-Orbitals N:UNK1 Pi-Orbitals
Pi-Orbitals A:LEU22 Alkyl
Initial
H-Donor N:UNK1:O H-Acceptor HB H (ASN64) - O (Drug)
H-Donor A:ALA9:O H-Acceptor H (NH) - O (ALA9)
C-H A:PHE34 Pi-Orbitals
Pi-Orbitals N:UNK1 Pi-Orbitals
Alkyl A:ILE60 Alkyl
Pi-Orbitals A:ALA9 Alkyl
Pi-Orbitals A:LEU22 Alkyl π-σ C (Quinazoline) - PHE34
π-π (S) PHE31 - Benzene
H-Donor N:UNK1:O H-Acceptor
H-Donor N:UNK1:O H-Acceptor π-π (T)
H-Donor A:GLU30:OE2 H-Acceptor R C (Drug) - ILE60
H-Donor A:VAL115:O H-Acceptor π-R Quinazoline - ALA9
H-Donor A:GLU30:OE2 H-Acceptor Quinazoline - LEU22
H-Donor A:ASN64:O H-Acceptor
Pi-Orbitals N:UNK1 Pi-Orbitals
Pi-Orbitals N:UNK1 Pi-Orbitals C-H
Alkyl A:ILE60 Alkyl
Pi-Orbitals N:UNK1 Alkyl
Pi-Orbitals N:UNK1:C Alkyl
BL From Chemistry To Chemistry Final
2.67 NH (Drug) H-Donor O (ASN64) H-Acceptor
HN (ALA9) - O (NO2) 2.02
H(NH) - O (ASP21) 2.27
3.86 PHE31 π Benzene (Drug) π
4.23 PHE34 π Benzene (Drug) π PHE34 - Benzene 3.69
3.96 Cl (Drug) R R (ILE16) R
Cl - R (ILE60) 5.02
Cl - R (ILE60) 3.95
Cl - (LEU67) 5.15
Cl - (VAL115) 4.63
5.27 PHE34 π C-Benzene (Drug) R PHE34 - Cl (Drug) 4.97
Benzene - LEU22 5.25
4.89 Benzene (Drug) π PRO61 R
5.34 Benzene (Drug) π ILE16 R
Cl R R (ILE60) R
Cl R R (ILE60) R
Cl R R (LEU67) R
Cl R R (VAL115) R
PHE34 π Cl (Drug) R
Benzene (Drug) π LEU22 R
Pteridine(Drug) π ILE16 R
Pteridine(Drug) π ALA9 R
H-(GLY53) H-Donor O (OH-Drug) H-Acceptor
PHE34 π Benzene π
Benzene π LEU22 R
PHE34 π Quinazoline π
PHE34 π Quinazoline π
O (GLU30) Negative Pyridine π
PHE31 π C (Quinazoline) R
PHE34 π C (Quinazoline) R
Pyridine π LEU22 R
PHE34 π Pyrimidine π
PHE31 π Benzene (Drug) π
C (Drug) R ILE60 R
PHE34 π C (Drug) R
Benzene π ILE60 R
From Chemistry To Chemistry
C (Drug) R ILE60 R
C (Drug) R LEU67 R
PHE34 π C (Drug) R