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Man Chester Tics Brochure
Man Chester Tics Brochure
COURSE
OVERVIEW
Bioinformatics: an online Masters Degree programme, delivered jointly by The University of Leeds and The University of Manchester
This new world-class programme is based on modules from the established MRes Bioinformatics Degree course taught at The University of Leeds and the MSc Bioinformatics Degree taught at The University of Manchester. It draws upon expertise from both institutions. You can be admitted to the Certificate, Diploma or Masters Programme, once you complete at least two core modules and no more than four modules.Alternatively, you may choose to study one or more selected modules of your choice.
COURSE
STRUCTURE
This course shows the value of collaboration between WUN members. Bioinformatics is one of the most critical areas of development in the biological sciences and I am delighted that WUN can make this contribution to a leading-edge agenda.
Sir Alan Wilson, University of Leeds Vice-Chancellor and Chairman of WUN
The programme was developed jointly by The University of Leeds and The University of Manchester, as members of the Worldwide Universities Network (WUN), which is an international partnership of leading higher education institutions. The course is delivered online, via a virtual learning environment known as the Bodington System.This allows you to navigate and search through course notes, protocols, practicals and references to useful texts and URLs.The course notes are provided as web pages.These provide the necessary background to the course, which is focused on problem-based learning.Throughout the course you will interact with the members of the course team, and with other learners, through course study rooms and 'chat rooms' for online tutorials. 3 The programme consists of modules, each of which has a value of 15 credits, and a literature or research project. Some of the modules described here may change, according to demand and availability.The structure of the programme is as follows: Certificate programme 4 modules = 60 credits Introduction to Bioinformatics One module selected from: C for Bioinformatics, Introduction to Molecular Biology, Java for Bioinformatics, or Theory and Applications in Bioinformatics One module selected from: Biocomputing, or Object-orientated analysis and design with UML One further module selected from the Optional Modules Diploma programme 6 modules plus Literature Project = 120 credits Introduction to Bioinformatics Theory and Applications in Bioinformatics One module selected from: C for Bioinformatics, Introduction to Molecular Biology, or Java One module selected from: Biocomputing, or Object-orientated analysis and design with UML Two further modules selected from the Optional Modules The Literature Project (30 credits) Masters programme 6 modules plus Research Project = 180 credits Introduction to Bioinformatics Theory and Applications in Bioinformatics One module selected from: C for Bioinformatics, Introduction to Molecular Biology, or Java One module selected from: Biocomputing, or Object-orientated analysis and design with UML Two further modules selected from the Optional Modules The Research Project (90 credits)
CORE MODULES
Introduction to Bioinformatics
This is designed to develop the skills now needed by the biotechnology industries. It is divided into six sections: 1. Introduction to Bioinformatics and the Internet 2. Sequence databases 3. Sequence alignment and database searches 4. Protein function prediction 5. Protein structure prediction 6. Sequencing projects and contig analysis
Biocomputing
This is designed to develop the skills required by biotechnology industries. As genome-sequencing projects continue to generate huge volumes of data, a major challenge for biologists is the effective management of these data in order to extract useful information. Computational biology, or Biocomputing, is concerned with the development of these methods for storage and processing of biological data. A large part of the work of computational biologists consists of the management and analysis of strings of characters that may be nucleic acid or protein sequences, or their annotation.
introduced in the Introduction to Bioinformatics module). The module consists of six parts: 1. Introduction to Probability and Statistics using Matlab 2. Traditional Sequence Alignment and Search
genome. You carry out exercises using authentic data from research laboratories at the University of Leeds and use state-ofthe-art software tools for analysis and interpretation.
Intermediate Java
This module is designed to further develop the skills you will need to write more advanced programs using the Java language. The taught half of the course is divided into eight workpackages. Each has a number of modules of a Computer Based Training (CBT) package to complete; a number of example or demonstration programs to understand, compile and run; and an exercise to carry out. For the second part of the course you undertake three mini-projects.
Monte Carlo simulations; conformational analysis; solvation; calculation of thermodynamic parameters and the module finishes with a section on structure-based drug design and virtual screening of lead compounds for drug development.
3. Introduction to Probabilistic Sequence Models 4. Markov Chains and HMM Applications 5. Phylogenetic Methods 6. Neural Networks (in brief)
LITERATURE PROJECT
This provides Diploma students with experience and training in abstracting and assessing information from a variety of published sources. It is designed to give experience in carrying through a substantive review of developments in Bioinformatics. You will be expected to report and make recommendations on the scientific, resource and investment issues that will inform management decisions. Your project results will need to be presented as a bound dissertation of at least 10,000 words.
OPTIONAL MODULES
Introduction to Microarray Data Analysis
This module focuses on microarray data analysis in the context of post-genome bioinformatics. You will work through practical examples using the maxdview visualisation environment. There are six sections: 1. An overview of biological information 2. Data capture 3. Using the data 4. Data integration 5. Strategies for drug discovery 6. Industrial organisation
RESEARCH PROJECT
The objective of the MSc research project is to give you experience and training in bioinformatics research. The project is normally carried out in your workplace. It aims to help you understand and experience: the technical skills required for efficient bioinformatics research the organisation and implementation of research working to deadlines and as part of a team the skills required to record, report and write-up original scientific research The results of your supervised research project will need to be presented as a bound dissertation (minimum length 20,000 words, maximum length 30,000 words or equivalent scientific data content).
Entry requirements
For admission to the programme you must have a first or upper second class degree or equivalent qualification in a relevant science subject some relevant knowledge or experience of bioscience and/or computer science and/or mathematics relevant to informatics access to a PC running a recent version of Microsoft Windows (preferably Windows XP or Windows 2000), with a screen resolution of 1024 x 768 during the course you will be required to download and install programs and plug-ins which only run under Windows, so no other operating system will be supported the recommended textbooks will be supplied in an online form which will require Microsoft Internet Explorer version 5.5 or above; no other browser is currently recommended you will need to download and install the following plug-ins: Adobe SVG Viewer, MDL Chemscape Chime, and Sun Java plug-in (version depends on Windows version) proficiency in written English you should be able to produce well-structured work, summarise key points clearly and discuss issues in writing from different points of view a willingness to spend some time in discussion and working online with others in your tutor group, sharing your professional experience and learning from them commitment, determination, enthusiasm and the ability to be organised and work independently an average of 7-8 hours a week per module available for your studies.You will need to log on several times a week To progress to registration for an award you will need to demonstrate satisfactory performance in two core modules.
W H AT
IS
ONLINE
S T U DY ?
Online study, sometimes known as eLearning, means that rather than studying and attending lectures at a higher education establishment, the student uses the Internet to access course information and transmit completed assignments for marking. This enables a person from anywhere in the world to take a world-class course at a leading UK university without attending the university in person.
materials provided online and you will often need to undertake independent research to find additional reading matter or information. Group activities will be timetabled and will last for a number of days to let you participate at times that suit you personally. A typical small group study might involve a task or exercise linked to a particular theme. A group discussion will bring students together in a larger group to discuss or debate set questions. Your tutor will provide full guidance and support. When you complete the course, depending on your choice of modules and the nature of your research project, you will receive an award from either the University of Leeds or the University of Manchester. This has exactly the same internationally recognised status as the equivalent programme studied at the University.
The course includes tutor-marked assignments and written assessments. You will be taught and assessed through a combination of media, computer conferencing and the Internet. Your work will be marked and returned to you with detailed comments and advice. You will find this comprehensive personal feedback one of the most valuable aspects of your study.
Programme
You will take part in a range of activities. Private study will include reading
Full support
One or more tutors who specialise in the theory and practice of Bioinformatics will support you and your group. They will act as mentors and provide you with personal guidance as you progress, advising you how to make the most of the course and helping you to overcome any obstacles you encounter. The Universities also provide a comprehensive range of administrative and general support services throughout your course.
WHO
PROVIDES THIS
COURSE?
Manchester and Leeds Universities deliver the course jointly. Manchesters campus-based Bioinformatics course was among the first anywhere, while the Faculty of Biological Sciences at Leeds is one of the largest life-science research centres in the UK.
The Universities of Leeds and Manchester have worked in close partnership to design, develop and provide this course.
The University of Leeds was established as a University in 1904. Internationally acknowledged as a centre of excellence in a wide range of academic and professional disciplines, it is one of the largest and most popular universities in the UK, and rates among the top ten for research.
If you are interested in applying for a place on the course, you can apply online or request more details at: http://www.cs.man.ac.uk/biomed/applications.html
The University of Manchester is a truly international institution with a worldclass reputation for high quality research. In the most recent (2001) Research Assessment Exercise, the University received the top 5* rating, denoting international excellence, in both Biology and Computer Science, for teaching and research.
The Worldwide Universities Network (WUN) is a grouping of research-led institutions of international standing who have come together to create a worldwide research and graduate education partnership.
Please note: This prospectus may contain some details that have subsequently changed. Up-to-date information is available from Heather.Vincent@man.ac.uk or write to: Heather Vincent Room 2.89 Department of Computer Science University of Manchester Oxford Road Manchester M13 9PL UK