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Jaguar CU Cerrado Portugal2019 Oryx
Jaguar CU Cerrado Portugal2019 Oryx
in the Cerrado
MARINA PERES PORTUGAL, RONALDO GONÇALVES MORATO
KATIA MARIA PASCHOALETTO MICCHI DE BARROS FERRAZ
FLÁVIO H E N R I Q U E G U I M A R Ã E S R O D R I G U E S and C L A U D I A M A R I A J A C O B I
Study area specialists in the course of field studies in the Cerrado dur-
ing –. To reduce spatial autocorrelation we firstly
The Cerrado (Fig. ) comprises ,, km of savannah rarefied presence records of jaguars within a distance of
and various types of grasslands and shrublands, as well as km, which corresponds to the approximate radius of the
tropical, semi-deciduous and deciduous forests (Coutinho, jaguar’s home range ( km) in the Cerrado (Astete et al.,
). The climate is seasonal, with rainy summers and ). We then used the SDMtoolbox in ArcGIS .
dry winters. The mean annual temperature is – °C (ESRI, Redlands, USA) to calculate the heterogeneity of
and the mean annual rainfall is ,–, mm the first three principal components of continuous envir-
(Coutinho, ). The Cerrado has a low human population onmental layers (Table ), producing a final heterogeneity
density and a mean human development index (UNDP, layer that allowed us to rarefy records by reducing climate
) of . in the principal municipalities. Agriculture autocorrelation among them (Brown, ).
and cattle ranching are the main sources of livelihood
(Mueller & Martha, ).
Environmental layers
, ). Maxent is one of the most popular tools for (Barbet-Massin et al., ), we decided to use a biome scale
modelling species distribution using only presence data because the jaguar distribution in the Atlantic Rainforest has
and has been adopted in many studies to identify areas been better predicted using biome databases than continen-
of high conservation value (Fourcade et al., ; tal ones (Ferraz et al., ).
Morato et al., ; Paviolo et al., ). In general, it per- We used various combinations of non-correlated
forms better than other algorithms (Peterson et al., ; layers and generated models in Maxent (Supplementary
Doko et al., ; Rodríguez-Soto et al., ). Maxent Material ). We also ran each model with raw output to cal-
assumes that the presence of a species at a sample location culate Akaike information criteria corrected for small sam-
indicates a favourable set of ecological variables and esti- ple sizes (AICc), using the NicheA toolkit (Qiao et al., ).
mates the closest probability to a uniform distribution (the We chose AICc based on its top performance in selecting
distribution of maximum entropy; Phillips et al., ). models with small sample sizes (Warren & Seifert, ).
Although restricting the range of occurrence of a species We assessed model performance using the area under
may introduce bias in species distribution modelling results the receiver operating characteristic curve (AUC), AICc,
TABLE 1 Environmental variables used in species distribution modelling for the jaguar Panthera onca in the Cerrado (Fig. ), with their
original spatial resolution, year and functional relevance, and sources.
Original
spatial
Environmental variables resolution1 Year Functional relevance Source
*Mean annual temperature 90 m 2012 Used to characterize climate, which can Alvares et al. (2013a)
influence felid & prey activities
(Astete et al., 2008)
*Mean annual rainfall 90 m 2013 Used to characterize climate, which can Alvares et al. (2013b)
influence felid & prey activities
(Astete et al., 2008)
Land cover 1:250,000 2009–2010 Jaguars prefer forested areas & areas near Vegetation map of 2002
rivers. They avoid human disturbance, updated to 2009/2010
selecting areas with a high proportion of (Supplementary
natural habitat & a high proportion of Material 1)
closed canopy (Vynne et al., 2011)
*Elevation 90 m 2008 Most important factor in a jaguar species CGIAR Consortium
distribution model for the Caatinga (2008)
biome, with low human activity in
high-elevation areas (Morato et al.,
2014)
Vegetation height 30 m 2007 Can be an indicator of canopy cover, Woods Hole Research
which has been associated with Center (2007)
probability of jaguar presence
(Vynne et al., 2011)
*Euclidean distance from 1:250,000 2013 Known to influence jaguar occurrence HydroWeb (2010)
water & *density of (Morato et al., 2014)
drainage
*Euclidean distance from 1:250,000 2008 Indicates distance to human activities, Urban areas identified
urban areas which negatively influence the presence in the land-cover map
of jaguars (De Angelo et al., 2011)
*Slope & *terrain ruggedness 90 m 2008 Can affect the movement of some Sappington et al. (2007)
predators & prey (Laporte et al., 2010)
Temporal enhanced 250 m 2013 Used as a proxy for primary produc- LAPIG (2013)
vegetation index tivity, as ungulates (the main prey of
(*maximum, *minimum, jaguars in the Cerrado; Astete et al.,
*mean, *rainy 2008) respond to primary productivity
(Oct.–Mar.) & *dry (Pettorelli et al., 2011)
(Apr.–Sep.) dry seasons)
We used a spatial resolution of m for modelling. Where required, resolutions were resampled with the nearest neighbour assignment for continuous
layers and the majority resampling technique for categorical layers.
*The continuous environmental variables.
binomial probability, and omission error (Pearson, ; KF, RGM and FHGR also analysed the final model visually
Supplementary Material ). We also interpreted the margin- and validated the results.
al curves of the variables that most influenced the models;
these are plots created by Maxent that reflect the dependence Jaguar conservation units
of predicted suitability both on the selected variable and on
dependencies induced by correlations between the selected We used the best model to select pixels equal to or higher
variable and other variables (Pearson, ). than the median suitability value of the final species distri-
We used an independent dataset of jaguar occur- bution model (Rodríguez-Soto et al., ; Morato et al.,
rences from the National Predator Research Center ) and select highly suitable areas. As the jaguar is a
(Supplementary Table ), for –, to validate our threatened species, we generated polygons using % of
final model. Jaguar occurrence was predicted correctly if the volume contour of the isopleth function (Beyer, )
records were within a radius of km of suitable pixels, the to guarantee that areas with high and medium suitability
same distance used to rarefy records, confirming that pixels would be selected, thus avoiding restricting prioritization
were within the potential home range of the individuals. of jaguar conservation units to high suitability areas only.
We designated all polygons jaguar conservation core areas; Cerrado, and then overlapped them with areas suggested
i.e. large areas with medium or high environmental by the Brazilian government for biodiversity conservation,
suitability for jaguars. to identify and review the conservation actions already
We used Zonation (Moilanen, ), for spatial conser- indicated for the geographical regions of priority jaguar
vation prioritization, to define jaguar conservation units conservation units (MMA, ). All spatial analyses and
within each jaguar conservation core area. Zonation re- geoprocessing were conducted in ArcGIS.
moves cells of multiple environmental layers interactively
and provides a map with the smallest aggregate margi- Results
nal loss of environmental characteristics (Lehtomäki &
Moilanen, ). We ran Zonation combining the habitat The best distribution model (AUC test = . ± SD .,
suitability map within jaguar conservation core areas, which omission error = ., P = .) used occurrence
we assigned a weight of , and areas with natural vegetation points and nine environmental layers. It identified % of
(from the land-cover map), which we assigned a weight of the Cerrado (c. , km) as being suitable for the jaguar
zero, using the additive benefit function (Lehtomäki & (Fig. a). The model was accurate: .% of the additional
Moilanen, ). We used different weights to avoid select- records used only for validation were predicted correctly.
ing pixels with suitable vegetation but no jaguar occurrence. However, only .% of the biome (, km) showed
We used a warp factor of , allowing edge removal and high suitability (. .) for the species. These areas were
distribution smoothing to obtain a more compact solution. located primarily in the north-east of the biome and in
From this ranked output we selected the percentage that small areas in the north-west, near the Amazon biome.
represented % of the Cerrado area (, km), similar The variables that best predicted jaguar distribution in
to the current extent of protected areas in the world the Cerrado were mean rainfall (Table , Fig. ) and land
(Albuquerque & Beier, ). cover (Table , Fig. ). The probability of jaguar presence
We transformed this final zonation raster into polygons was high in areas with –, mm of rainfall; i.e. near
and assessed those . . km in area according to the rank- the Caatinga biome, a semi-arid region of Brazil. There
ing of parameters in Table , to prioritize jaguar conserva- was also a high probability of jaguar presence in areas
tion units. We used the area of the jaguar conservation unit with , mm of rainfall, near the Amazon biome. Forest
and the presence of jaguars, according to the concept of areas (open evergreen upper plains forest and forested grass-
jaguar conservation units established by Sanderson et al. land savannah) had a high probability of jaguar presence,
(). We added the categories proximity to protected followed by some savannah types and secondary vegetation.
areas and potential connectivity, as we aimed to select jaguar The probability of jaguar presence in human-modified areas
conservation units that would connect to other patches. The was low to medium (Fig. ). Maximum enhanced vegetation
potential for connectivity is based on the probability of con- index, forest height, and mean annual temperature also con-
nectivity index, which examines an attribute of the patch tributed significantly to the model (Supplementary Material ).
(mean habitat suitability value, in this case) and the max- We identified jaguar core conservation areas
imum product probability of all paths between a pair of (, km; Fig. b), covering % of the Cerrado. Within
patches, calculated using Conefor . (Saura & Torné, ). these areas we identified jaguar conservation units,
This probability was based on the mean dispersal distance covering % of the biome (, km). Most reserves
(. probability), calculated as km according to the for- were medium or low-priority jaguar conservation units be-
√
mula × home range (Bowman et al., ). We assumed cause of their small area (, km) and distance from strictly
this number to be plausible, as there is no dispersal distance protected areas (. km), with absence of jaguar records
available for the jaguar in the Cerrado. within a radius of up to km and low importance for con-
Each polygon was then assigned a score for each category nectivity. Only , km (% of the Cerrado) of the jaguar
(Table ) and the polygons were categorized into four types conservation units are within strictly protected areas.
based on the sum of the scores: () high-priority jaguar The ranking of jaguar conservation units prioritized
conservation units, with a score of $ ; () medium-priority units (Fig. ), in five areas (Table ). Only units over-
jaguar conservation units, with a score of –; () low- lapped with an existing strictly protected area. High-priority
priority jaguar conservation units, with a score of –; jaguar conservation units covered .% of the Cerrado
and () stepping stones between jaguar conservation units, biome (, km). Only four units could sustain a viable
with a score of # . population ($ individuals) and could sustain two or
For the final jaguar conservation units, we estimated the more individuals (Table ). Three units could not sustain
mean jaguar population according to the lowest and highest a mating pair but were ranked highly because of jaguar pres-
recent estimates (. and . per km, respectively) ence records inside the polygon, or high connectivity im-
for Emas National Park (Sollmann et al., ). We grouped portance. Most high-priority units are within the areas of
the units into areas according to their distribution in the the Cerrado that the Brazilian government recognizes as
TABLE 2 Ranking of parameters used for prioritization of jaguar conservation units in the Cerrado.
FIG. 3 (a) Habitat suitability for the jaguar, identified by species distribution modelling, and (b) all jaguar conservation units (JCUs)
and jaguar core conservation areas (JCCAs) in the Cerrado biome (Fig. ).
Permutation
Variable % contribution importance
Mean annual rainfall 21.7 25.5
Land cover 19.4 10.0
Maximum enhanced vegetation 14.4 16.3
index
Forest height 13.2 7.2
Mean annual temperature 11.1 17.5
Euclidean distance from urban 8.0 7.6
areas
Ruggedness 4.9 7.9
Euclidean distance from water 4.2 3.1 FIG. 4 Marginal response curve of mean annual rainfall, the
Minimum enhanced vegetation 3.0 5.0 variable that contributed most to the jaguar distribution model
index for the Cerrado.
% more than the largest previous estimate (Desbiez et al., also the environmental covariates that best explained jaguar
). In general, our model identified similar appropriate occurrence in the Cerrado in an earlier study (Desbiez et al.,
regions to those of the National Action Plan for jaguar con- ). The low probability of jaguar presence in areas that
servation (Desbiez et al., ), based on -km-resolution received ,–, mm of rainfall probably reflects vege-
layers with various environmental data. There is a concen- tation loss. This rainfall range matches areas that have been
tration of highly suitable areas in the eastern corridor of the devastated by monoculture and extensive deforestation
Cerrado, which, with proper management, could connect (Coutinho, ). Regions with a high probability of jaguar
jaguar conservation units. presence comprise suitable habitats with native vegetation
Annual rainfall and land cover, the most important en- near the Caatinga biome (–, mm rainfall), in the
vironmental variables correlated with jaguar presence, were north-eastern Cerrado, where there is lower annual rainfall,
TABLE 4 High-priority jaguar conservation units in the Cerrado biome (Fig. ). Units with confirmed jaguar occurrence are indicated with
an asterisk.
Mean estimated
potential Ranking Government recommended
Jaguar conservation unit Area (km2)1 population size (range) score actions2
Amazonian border
1 1,959.59 8.92 (5.68–12.15) 12 R, PS
5* 1,909.30 8.69 (5.54–11.84) 16 P
10 2,413.83 10.98 (7.00–14.97) 10 P
12* 1,279.28 5.82 (3.71–7.93) 12 PS, SI
19* 4,035.55 18.36 (11.70–25.02) 12 SU, PS, MC, SI, R
Cerrado eastern corridor
2* 254.58 1.16 (0.74–1.58) 9
3* 92.94 0.42 (0.27–0.58) 9
4 1,488.96 6.77 (4.32–9.23) 10
6* 15,412.34 70.13 (44.70–95.56) 16 R, PS, MC, P, SU
7* 2,637.51 12.00 (7.65–16.35) 11 P, MC
8 1,538.20 7.00 (4.46–9.54) 10
9 1,420.79 6.46 (4.12–8.81) 10
11 1,180.57 5.37 (3.42–7.32) 10
13 1,179.68 5.37 (3.42–7.31) 9 R
14 588.27 2.68 (1.71–3.65) 9 R
15* 51,641.50 234.97 (149.76–320.18) 16 R, P, PS, CR, MC, SI
16 2,429.84 11.06 (7.05–15.07) 10 PS, P
17 860.28 3.91 (2.49–5.33) 9 PS, P
18 424.60 1.93 (1.23–2.63) 10
20* 16,433.74 74.77 (47.66–101.89) 17 P, PS, MC
21 3,033.45 13.80 (8.80–18.81) 11 PS, MC, R, SI, CR
22* 458.80 2.09 (1.33–2.84) 14 SI, PS, MC, SU
23* 711.74 3.24 (2.06–4.41) 13 R, PS
24* 1,210.13 5.51 (3.51–7.50) 14 CR, MC, SI, R
25 2,559.01 11.64 (7.42–15.87) 12 R, PS
26* 47,752.10 217.27 (138.48–296.06) 16 R, MC, P, PS, CR, SI
27 3,385.54 15.40 (9.82–20.99) 10
29 694.97 3.16 (2.02–4.31) 10 CR, R
Pantanal border
30* 728.20 3.31 (2.11–4.51) 10 SI
Atlantic Forest border
28 4,089.50 18.61 (11.86–25.35) 9 PS, MC, SI
31* 1,020.88 4.64 (2.96–6.33) 10 PS, MC
Includes adjacent areas that are already strictly protected.
R, restoration actions; PS, promote sustainability; P, territorial planning; SI, creation of strictly protected reserves; SU, creation of sustainable-use reserves
(equivalent to IUCN categories IV, V & VI; Rylands & Brandon, ); CR, creation of reserves of any type; MC, establishment of a mosaic of parks or
corridors (MMA, ).
conservation in Goiás and Tocantins states, because of low resident jaguars within their limits but most are in regions
environmental suitability, despite its native vegetation. where we presume jaguars are present.
Nonetheless, this area should be considered in jaguar con- Jaguar conservation units in the northern and north-
servation plans because, besides its regional importance, it eastern Cerrado may be vital for maintaining the con-
may be relevant for connecting jaguar conservation units nectivity between the Amazon and Caatinga biomes and
in the northern Cerrado. preventing genetic losses among populations. Recent studies
We identified high-priority jaguar conservation units reported the effects of habitat deterioration on jaguar ge-
(occupying , km) in the Cerrado, compared to previ- netics in the Caatinga and Atlantic Forest (Haag et al., ;
ous studies that identified five to seven units (occupying Roques et al., ). The Amazon, Cerrado and Pantanal po-
c. , km; Sanderson et al., ; Zeller, ). Units pulations still maintain good genetic diversity, but the gen-
of medium and low priority can still improve total extension etic connectivity in central areas of Brazil, mainly the
and connectivity among jaguar conservation units. Not Cerrado, needs to be maintained to avoid further declines
all jaguar conservation units have confirmed records of (Roques et al., ). Preserving the connectivity between
jaguar conservation units in the Cerrado may prevent Acknowledgments We thank the National Council for Scientific
genetic losses in this biome. and Technological Development for a PhD scholarship to MPP
(Proc. 141266/2013-9) and productivity scholarships to CMJ (Proc.
The Cerrado eastern corridor, which encompasses the
305403/2013-3), FHGR (Proc. 306695/2015-4), KMPMBF (Proc.
largest jaguar conservation units, is particularly threatened 308503/2014-7) and RGM (301652/2015-5), the National Predator
because it lies in the new soybean frontier referred to as Research Center, Chico Mendes Biodiversity Conservation Institute,
MaToPiBa, a region with cheap land, which accounted the collaborators of the National Conservation Action Plan for the
for % of Brazilian soybean production during – Jaguar, the SISBIO database, Rafael Aarão, José Roberto Moreira,
(Reynolds, ). We recommend that actions listed in Marina Motta Carvalho and Leo Caetano for providing jaguar records,
Milton Ribeiro for methodological advice, and Thiago Vieira and Carol
Table , such as the creation of new strictly protected Couto for updating the land-cover map.
areas and corridors, be implemented as soon as possible
to preserve jaguar conservation units in these regions Author contributions Research lead, writing: MPP; technical ad-
(Moraes, ; Desbiez et al., ). We also recommend vice, writing, revision: RGM, KMPMBF, FHGR, CMJ.
the creation of new protected areas and corridors for
Conflicts of interest None.
those jaguar conservation units in areas for which the
Brazilian government has no suggested actions. Ethical standards This research abided by the Oryx Code of
The Cerrado has .% of its territory protected but , % Conduct.
is within strictly protected areas (MMA, ). Many of the
jaguar conservation units are in regions where the govern-
ment has recommended the creation of new strictly pro- References
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