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Ecological Indicators 110 (2020) 105866

Contents lists available at ScienceDirect

Ecological Indicators
journal homepage: www.elsevier.com/locate/ecolind

The measurement of ecosystem development in Caribbean coral reefs T


through topological indices

Jimmy Argüelles-Jiméneza, , Jorge Christian Alva-Basurtob, Horacio Pérez-Españaa,
Manuel J. Zetina-Rejónc, Jesús Ernesto Arias-Gonzálezd
a
Instituto de Ciencias Marinas y Pesquerías, Universidad Veracruzana, Hidalgo 617, Col. Río Jamapa, C.P. 94290 Boca del Río, Veracruz, Mexico
b
Parque Nacional Costa Occidental de Isla Mujeres, Punta Cancún y Punta Nizuc, Boulevard Kukulcán Km 4.8, Zona Hotelera, Municipio de Benito Juárez, C.P. 77500
Cancún, Quintana Roo, Mexico
c
Instituto Politécnico Nacional-Centro Interdisciplinario de Ciencias Marinas, Av. Instituto Politécnico Nacional S/N Col. Playa Palo de Sta. Rita, C.P. 23096 La Paz, BCS,
Mexico
d
Laboratorio de Ecología de Ecosistemas de Arrecifes Coralinos, Departamento de Recursos del Mar, Centro de Investigaciones y de Estudios Avanzados del Instituto
Politécnico Nacional, Unidad Mérida, C.P. 97310 Mérida, Yucatán, Mexico

A R T I C LE I N FO A B S T R A C T

Keywords: The exploration of gradients of development stages of coral reef ecosystems is a subject poorly studied, especially
Development attributes when they exhibit multiple degrees of geomorphological or structural development or both. The objective of the
Succession present work was to study the gradient of functional and structural maturity of the Mexican Caribbean coral
Development stages reefs (CM). Here we analyzed three geomorphological zones that cover a gradient of 400 km in length in order to
Ecosystem maturity
obtain coral reefs with different geomorphologies. Thirteen reefs were selected, for which 12 ecosystem de-
Coral reefs
Mexican Caribbean
velopment attributes and five topological indices were analyzed. The development attributes of coral reefs were
estimated from trophic models constructed using Ecopath with Ecosim (EwE), while the topological indices were
calculated from the predator-prey matrix obtained from each EwE model. Through a partial redundancy analysis
(RDA) seven of the 12 development attributes (ascendency, overhead, development capacity, net primary
production, ascendency/development capacity, overhead/development capacity and richness of functional
group) were selected due their low or null collinearity. Using the developmental attributes selected in a non-
metric multidimensional scaling (stress: 0.1) and analysis of similarities (r global: 0.828 and p: 0.001), we found
a gradient of maturity that increases from north to south, i.e., northern coral reefs (e.g. Puerto Morelos) are less
mature than southern coral reefs (e.g. Mahahual). On other hand, through a non-parametric ANOVA and a
partial redundancy analysis (first axis: F-ratio = 62.054, p = 0.012; second axis: F-ratio = 1.591, p = 0.014;
100% of the total variance explained by the first two canonical axes) we detected that topological indices
respond to development stages, in this way the control flow increases with the maturity while the inter-
mediation, number of connections and number of interactions depredator-prey are inverse to maturity; there-
fore, topological indices can be used to describe development stages. The determination of a gradient of maturity
in MC coral reefs should be considered in management and conservation policies, therefore different strategies
must be implemented in ecosystems, because resilience and ecosystem response depend on them.

1. Introduction 2011) and despite having originated in the same geological period,
their geomorphological and structural development differs. This may be
The modern coral reefs located in the Caribbean Sea began their due to gradients of enviromental conditions (temperature, transpar-
development during the Holocene (Blanchon et al., 2002; Blanchon, ency, salinity, wave exposure, and hurricane impacts), which have a

Abbreviations: EwE, Ecoptah with Ecosim; NMDS, non-metric muldidimensional scaling; ANOSIM, analysis of similarities; SIMPER, percentage similarity analysis;
RDA, analysis of canonical redundance; Pp/R, primary production/respiration; Pp/B, primary production /biomass; TST, total system throughput; B/TST, biomass/
total system throughput; NPP, net primary production; A, ascendency; DC, development capacity; O, overhead; A/DC, ascendency/development capacity; O/DC,
overhead /development capacity; FCI, Finńs cycling index; S, functional diversity; Dc, degree centrality; Cc, closeness centrality; Bc, betweenness centrality; Dw,
weighted degree

Corresponding author.
E-mail addresses: cayix24@gmail.com (J. Argüelles-Jiménez), earias@cinvestav.mx (J.E. Arias-González).

https://doi.org/10.1016/j.ecolind.2019.105866
Received 21 July 2019; Received in revised form 22 October 2019; Accepted 24 October 2019
Available online 12 November 2019
1470-160X/ © 2019 Elsevier Ltd. All rights reserved.
J. Argüelles-Jiménez, et al. Ecological Indicators 110 (2020) 105866

direct effect on the fundamental biological processes (including meta-


bolites and photosynthesis) that determine the development of these
reefs. These gradients have been explained through the physicochem-
ical provinces described for the Caribbean Sea (e.g. Chollet et al.,
2012); in this way, a gradient of physicochemical regions with op-
timum, intermediate and suboptimal conditions for coral reefs exist in
the Caribbean Sea. An example of optimal conditions is the region of
the Inner Caribbean, with oligotrophic waters, far from large pluvial
discharges and characterized by stable warm environments, high
transparency, and low sedimentation. An example of reefs in the Inner
Caribbean, are those distributed throughout the Mexican Caribbean
(Chollet et al., 2012), and, for these reefs a decrease in geomorpholo-
gical development has been described from north to south (i.e., dif-
ferent reef extension, structural complexity, type and number of habi-
tats) (Gutiérrez-Carbonell et al., 1993, 1995; Arias-González, 1998;
Núñez-Lara et al., 2005). Some authors have identified differences in
the community structure of fish and corals in this area, as well as in the
geomorphological complexity and functioning of their trophic networks
(Núñez-Lara et al., 2005; Arias-González et al., 2011a; Rodríguez-
Zaragoza and Arias-González, 2015). Chávez and Hidalgo (1988) and
Chávez et al., (2007) have suggested that variations in reef geomor-
phology can result in differences in the level of ecosystem maturity.
Trophic structure is vital to understanding the structure and func-
tioning of ecological systems (Pimm et al., 1991). In this sense, Odum
(1969) argued that structural changes can occur in each ecosystem
development stage, being more complex in mature ecosystems. How-
ever, Odum (1969) did not delve into the structural behavior of trophic
networks, i.e., the role or importance of species and/or functional
trophic groups in the dynamics and structural stability of the eco-
system. For this reason and considering that the attributes of the eco-
systems provide a guide to understanding maturity gradients, the pre-
sent study intends to answer the following questions: 1) is there a Fig. 1. Study area. (A) Yucatan Peninsula. (B) North portion of the
gradient in the level of ecosystem development of coral reefs in the Mesoamerican Reef System and its three sectors. Thirteen reefs were selected
Mexican Caribbean that can be explained by geomorphological devel- for the study: Punta Nizuc (PN), Puerto Morelos (PMo), Punta Maroma (PMa),
opment? 2) Does the structure of trophic networks contrast with the Akumal (Aku), Boca Paila (BP), Yuyum (Yy), Punta Allen (PA), Punta Herrero
(PH), Tampalam (Ta), El Placer (EP), Mahahual (Ma), Xahuayxol (Xa) and
gradient of ecosystem development stages? In this last question, we
Xcalak (Xc). (C) Division of the reefs of the Mexican Caribbean based on their
explore the way in which topological indices characterize development
geomorphology: Northen sector (NS), Central sector (CS), and Southern sector
stages. Our approach is to determine the ecosystem’s maturity through (SS). Reef complexity with top and side view: L = lagoon, C = Cresta,
ecological networks analysis (ENA), using the ecological descriptors of F = front, S = slope, T = terrace. Depth in meters. Modified from Núñez-Lara
energy flows described by Odum (1969) and Ulanowicz (1986). et al., (2005), and Rodríguez-Zaragoza and Arias-González (2015).

2. Materials and methods


located in the southern sector (Núñez-Lara et al., 2005; Rodríguez-
Zaragoza and Arias-González 2015). For a detailed description of the
2.1. Study area
study area, see Arias-González (1998) and Arias-González et al.
(2011a).
The study area is located in the physicochemical province of the
Inner Caribbean (Chollet et al., 2012) and is part of the northern section
of the Mesoamerican Reef System, which has been considered one of 2.2. Ecopath models
the most biodiverse places in the Caribbean Sea (Arias-González et al.,
2011a). Thirteen reefs, located between 18°00′ and 21° 00′ N (Fig. 1) Models analyzed were built using the Ecopath with Ecosim software
were selected, which are part of a semicontinuous fringing reef that (EwE v6.5; available at http://www.ecopath.org). The EwE approach is
grows near and parallel to the coast, from Cancun to the border be- defined by a linear equation for each species or functional group (i)
tween Mexico and Belize (Arias-González et al., 2011a; Alba-Basurto included in the model. Each equation represents an energy balance
and Arias-González, 2014; Rodríguez-Zaragoza and Arias-González, between production and energy costs. Therefore, the output of each
2015). According to its geomorphological characteristics, current group (i) can be expressed by the linear Eq. (1):
human developments and patterns of use and protection, the reefs can n
P
be grouped into three sectors (north, center and south). The northern Bi ∗ ⎛ ⎞ ∗ EEi − ∑ Bj ∗ ⎛ Q ⎞ ∗ DCji − Yi − Ei − BAi = 0
sector includes Punta Nizuc (PN), Puerto Morelos (PMo), Punta ⎝ B ⎠i j=1 ⎝ B ⎠j (1)
Maroma (PMa), and Akumal (Aku) reefs. These reefs are characterized P
where for a group i , Bi is the biomass, is the production/biomass
by two habitats (lagoon and forereef) with long discontinuous and Bi
continuous coral formations, separated by large expansions of sand. On ratio, EEi is the ecotrophic efficiency, Bj is the predator biomass j, Q is
Bi
the other hand, the reefs of the central and southern sector have four the consumption/biomass relationship of the predator j , DCji is the
habitats (lagoon, forereef, slope and terrace), and have more developed fraction of i in the diet of j , Yi is the export value or fishing catch of
structures with spur and groove systems. The Boca Paila (BP), Yuyum group i, Ei is the net migration rate (emigration-immigration) and BAi is
(Yy), Punta Allen (PA), and Tampalam (Ta) reefs are in the center while the rate of accumulation of biomass. These last two elements were not
El Placer (EP), Mahahual (Ma), Xahuayxol (Xa), and Xcalak (Xc) are used in the present study due to the lack of data and assuming that the

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J. Argüelles-Jiménez, et al. Ecological Indicators 110 (2020) 105866

net balance of migration and accumulation of biomass is insignificant. attributes were considered the predictor variables. The significance of
For each equation of each group i, input parameters include B, P/B, Q/B the final model that validated the selected development attributes was
and EE as well as the composition of the diet (DCij ) of all consumers. At evaluated through a Monte Carlo test with 9999 permutations.
least three of the four basic parameters for each functional group of the The development stages (groups) were established with the selected
model must be included, and the program can calculate the remaining development attributes by means of non-metric multidimensional
value through the EE. The EE is the proportion of the production that is scaling (NMDS). To test if the groupings established through the NMDS
used within the system and must be less than or equal to 1; usually the differ significantly, a one-way analysis of similarity (ANOSIM) was
EE is used to check the balance of the model. Fishing values may or may applied, and, the classification of the developmental stages obtained
not be included, depending on the presence of a fishing fleet from the NMDS was used as a factor. On the other hand, to evaluate the
(Christensen et al., 2008). contribution of the development attributes to each grouping, a per-
centage similarity analysis (SIMPER) was applied to identify those
2.3. Construction of the models variables that contributed to 95% of the cumulative contribution. As a
measure to reduce variation of out-lier data, developmental attributes
Input data were collected from the beginning of the year 2000, and were normalized before performing the NMDS, ANOSIM and SIMPER.
are based on fish counts and benthic records in the study area (Núñez- Both the NMDS and the ANOSIM were performed on a dissimilarity
Lara et al., 2005; Arias-González et al., 2004; Acosta-González et al., matrix estimated using the euclidean distance. The three analyses were
2013) using linear transects of 50 × 2 m carried out in 714 sites dis- carried out with the PRIMER-E v7 software (Clarke and Gorley, 2006).
tributed among the 13 reefs. At each site 12 replicates were performed,
and number and length of the fish was recorded. Fish length was con- 2.4.2. Structural analysis
verted into biomass using length-weight relationship for which the In a trophic network, not all functional groups are equally relevant
parameters were obtained from samplings performed in this area in terms of structural dynamics and stability, hence their importance
(Arias-González et al., 2004), and from electronic FishBase database can be quantified by analyzing the contribution of each group and as a
(Froese and Pauly, 2019). Biomass of functional groups that were not whole; this can reveal general structural patterns (Abascal-Monroy
fish were estimated by EwE. et al., 2015). Considering this last idea, four topological indices (degree
Both the aggregation of functional groups of similar ecological centrality, closeness centrality, betweenness and weighted degree) and
characteristics (Table 6) as well as diet values for non-fish groups were one of substructures (modularity) were calculated using the consump-
based on Opitz (1996). The basic parameters of production/biomass (P/ tion matrix estimated by EwE and transformed to log10 (Abascal-
B) and consumption/biomass (Q/B) for the fish groups were obtained Monroy et al., 2015; Zetina-Rejón et al., 2015). Each index was nor-
from FishBase (Froese and Pauly, 2019). The values of the diet matrix malized to allow the comparison of results between models. Topolo-
and P/B were adjusted gradually for each of the models until they were gical indices and their normalization were performed using the igraph
balanced, when all EE < 1. The fishing values were obtained from library (Csardi, 2017) in R software (R Development Core Team, 2018).
commercial catch data (in tonnes) was obtained from a goverment of- Topological indices are briefly described below:
fice dedicated to monitoring fishing in Mexico (Secretaria de Agri-
cultura, Ganadería, Desarrollo Rural, Pesca y Alimentación: SAGARPA) a) Degree centrality (Dc ), considers the number of connections or re-
in the state of Quintana Roo. lationships of the functional groups (prey and predators), so that the
For each model biomass data were standardized at t/km2 and functional groups with the greatest number of connections are ob-
evaluated with a prebalance (PREBAL; Links, 2010). This diagnosis tained (Wasserman and Faust, 1994; Allesina et al., 2009).
provides a guide (Table 7) that was used to identify problems related to b) Closeness centrality (Cc ), measures the average of the inverse of the
the structure of the model and quality of the data after the mass balance distance between a given functional group and the rest of the
(Links, 2010). functional groups in the network; high values indicate a close re-
lationship between the given group and the other groups in the
2.4. Theory/calculation trophic network (Wasserman and Faust, 1994).
c) Betweenness centrality (Bc ), quantifies the frequency at which a
2.4.1. Ecosystem development stages functional group appears in the trophic routes between each pair of
For each of the 13 models, 12 ecosystem attributes were quantified. groups in the trophic network (Wasserman and Faust, 1994). In
Odum (1969) and Ulanowicz (1986) proposed eleven attributes to de- other words, it measures the importance of a functional group that
scribe the ecosystem development stages and one additional attribute appears frequently in trophic routes and that presents a position in
was proposed by the authors of the present study (net primary pro- the flow of matter from one group to another, or from one trophic
duction, see Table 1). Development attributes can be cataloged in two level to another (Abarca-Arenas et al., 2007).
of the six categories proposed by Odum (1969): 1) community en- d) Weighted degree (Dw ), is given by the sum of the flow of magnitudes
ergetics, and 2) community structure. Although species richness is between a functional group in terms of its position in the trophic
found in the category of community structure, we propose to use network and in terms of the energy that flows through it (Horvath,
functional diversity (S) instead, because functional trophic groups have 2011), i.e. it measures the control that a functional group has over
the potential to generate a better approach to describe process that the flow of energy among the rest of the functional groups.
occur within an ecosystem (Abarca-Arenas and Ulanowicz (1986)); e) Modularity, unlike the topological indices, which are estimated for
even if two ecosystem have the same number of species, they will not each functional group, this indicator measures the degree to which
necessarily have the same number of functional groups, so each eco- the trophic network is structured in subgroups (groupings). These
system will tend to function differently. Table 1 briefly describes at- subgroups are characterized because members that compose them
tributes of the ecosystems used. have more intense trophic interactions with each other than with
To establish the developmental stages of the Mexican Caribbean other groups in the trophic network (Stouffer and Bascompte, 2011;
coral reefs, the development attributes that contributed to explaining Zetina-Rejón et al., 2015). The modularity of each model was
the gradient of maturity and that did not present colinearity were se- quantified by means of the algorithm “fast-greedy finding”
lected (Table 8); this selection was carried out using forward selection (Newman and Girvan 2004), which is included in the igraph library
in a partial redundancy analysis (Ter Braak, 2002). For this, the geo- (Csardi, 2017). This algorithm uses modularity as a function of
morphological gradient of the Mexican Caribbean (factored) was con- maximization in an iterative way. Considering that modules are
sidered the response variable and the 12 normalized development groups determined by the strength of their trophic interactions,

3
J. Argüelles-Jiménez, et al. Ecological Indicators 110 (2020) 105866

Table 1
Development attributes used to assess development stages of the Mexican Caribbean coral reefs. References: Odum (1969)1, Ulanowicz (1986)2, Reaka-Kudla
(1997)3, Chollet et al. (2012)4 and Robertson et al. (2014)5.
Attribute Description Development stages Maturity stage

Primary production/respiration Relationship between primary production and the respiration rate. >1 ∼1
(Pp/ R )1
Primary production /Biomass Relationship between primary production and the total biomass. Lower Higher
(Pp/ B ) 1
Total system throughput (TST ) 2 Measurement of the metabolism of the system that describes its size and vigor. Lower Higher
Biomass/ Total system throughput Relationship between the total biomass of the system with respect to the TST . Lower Higher
(B / TST )1
Net primary production (NPP ) In mature ecosystems there is an increase in TST 1, which must be supported by various sources, Lower Higher
such as net primary production. It is proposed that this measure is positively associated with the
metabolism of the system and with energy cycling.
Ascendency ( A )2 Measurement of the size and maturity of the organization of flows in the ecosystem. Lower Higher
Development capacity (DC )2 Describes the full potential for the development of an ecosystem. Lower Higher
Overhead (O )2 The amount of DC that does not appear as an organized structure and that is available to be Lower Higher
organized as the system develops.
A/ DC 2 Relationship between A and DC that describes the degree of specialization. Lower Higher
O/ DC 2 Relationship between O and DC that describes the resilience of the system. Higher Lower
Finńs cycling index (FCI )1,2 The fraction of the total transfers of the system that is cycled. Lower Higher
Functional diversity (S ) Species diversity increases in succession processes and decreases in mature stages, with exception Lower Higher
of forests1. Coral reefs have a great species diversity3 that are housed in the inert structures (e.g.
CaCO3 in the reefs, wood in forests) that maintain their developed configurations. The greatest reef
fish diversity coincides with the Inner Caribbean4,5, which is composed of physicochemical
provinces where optimum values for the proper development of coral reefs are presented. Here it is
proposed that number of functional groups behaves as species diversity tends to increase towards
mature ecosystems, thus helping ecological redundancy and ecosystem stability.

these were used as a factor to determine whether the topological


indices differ between reefs and stages of development; the modules
were identified by their average trophic level (i.e. low, intermediate
and high).

Finally, to establish whether the topological indices differ between


the development stages, a nonparametric ANOVA was applied using the
Kruskal-Wallis test. The factor in each ANOVA performed was the
classification of the development stages obtained from the NMDS and
ANOSIM. As a complement to the Kruskal-Wallis test and to identify
association trends between the topological indices, the average trophic
level (number of modules per reef) and the development stages, a
partial redundancy analysis (RDA) was carried out. For this, the matrix
of topological indices were related to a factorial matrix (average trophic
level of the modules), while the development stages were used as a
supplementary variable. Prior to the RDA analysis, the topological in-
dices were normalized, and their significance was tested using the Fig. 2. Nonmetric multidimentional scaling (NMDS) based on the Euclidean
Monte Carlo test with 9999 permutations. The nonparametric ANOVA distance for seven development attrbutes: A , O , DC , NPP , A/ DC , O/ DC and S .
was carried out in R (R Development Core Team, 2018) and the RDA The code of the reefs corresponds to Fig. 1; High_D: high development, Med-
ium_D: intermediate development and Low_D: low development.
was performed using the CANOCO software (Ter Braak, 2002).

Table 2
3. Results
One-way comparisons through the ANOSIM between the development stages
identified considering the development attributes.
3.1. Ecosystem development stages
Comparisons R P

Five (PP/B, B/TST, PP/R, TST and FCI) of 12 attributes of devel- Global 0.828 0.0001
opment ecosystem, were discarded because they presented high coli- Low vs medium 0.606 0.008
nearity and had little explanatory power (Table 8), therefore the final Low vs High 0.994 0.008
model of the partial RDA with the nine remaining development attri- Medium vs High 0.979 0.029

butes was significant (first axis: F-ratio = 5.319, p = 0.0397; second


axis: F-ratio = 2.642, p = 0.0423; 100% of the total variance explained
attributes appeared in all three groups. Attributes that contributed most
by the first two canonical axes). With the remaining attributes, the
to the formation of the groups were A/DC, O/DC and S, while the at-
NMDS detected three groups of development stages, which coincide
tributes O, DC, NPP and A contributed less (Table 3). A characteristic of
with the three geomorphological sectors of the Mexican Caribbean: 1)
the attributes NPP, A, O and DC is that they presented low internal
north: low development, 2) center: intermediate development and 3)
variation and clearly distinguish the three stages of development, which
south: high development (Fig. 2). ANOSIM results indicated that there
is contrary to what the attributes A/DC, O/DC and S exhibit by partially
are significant differences between the three groups (Table 2).
distinguishing some of the stages of development and presenting
The SIMPER at 95% indicates that although the order of importance
greater internal variation (Fig. 3).
of the attributes is different between the development stages, the same

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J. Argüelles-Jiménez, et al. Ecological Indicators 110 (2020) 105866

Table 3
Percentage Similarity Analysis (SIMPER) with a 95% contribution for the development attributes in three ecosystemic development stages.
Low development Medium development Hight development

DA Mean Co AC DA Mean Co AC DA Mean Co AC

1 1 1
A/DC 22.43 25.62 25.6 S 41 22.26 22.3 S 41.3 26.46 26.5
O/DC1 77.57 25.62 51.2 O/DC1 77.59 18.34 40.6 A/DC1 22.51 22.15 48.6
S1 37.4 13.27 64.5 A/DC1 22.41 18.34 58.9 O/DC1 77.5 22.15 70.8
O2 24,030 8.89 73.4 O2 38,466 10.32 69.3 A2 23,302 7.35 78.1
DC2 30,981 8.88 82.3 DC2 49,579 10.29 79.6 NPP2 8006 7.32 85.4
NPP2 2389 8.87 91.2 NPP2 3813 10.26 89.8 DC2 103,511 7.29 92.7
A2 6951 8.85 100 A2 11,114 10.19 100 O2 80,209 7.27 99.99

DA: Development attributes, Mean: average of each development attribute, Co: contribution (%), AC: accumulated contribution (%). The superscript 1 is for the
attributes that partially distinguish development stages, while 2 is for those that distinguish them clearly based on the boxplots in Fig. 3.

3.2. Structural analysis Finally, the RDA corroborates the trends described at the develop-
ment stage level and demonstrates the importance of the average
The Kruskal-Wallis test detected that the topological indices (Dc , Cc , trophic level analyzed through the modules (Fig. 5). In this way, the
Bc , WD ) discern the different stages of development (Fig. 4). One of the highest values of DW occur in reef ecosystems with greater ecosystemic
four topological indices, Cc , indicates that the interactions (depredador- development (except for Punta Nizuc), linked to the intermediate and
prey) among functional groups tends to be greater for less developed high trophic levels. On the other hand, the highest values of Dc and Bc
ecosystems (H = 284.03, p < 0.0001). Contrary to Cc , WD , which were associated with low and intermediate development stages and a
determines the intensity of the connections in terms of energy flow, high average trophic level (e.g. Punta Maroma, Yuyum reefs), while Cc
tends to increase in reefs of greater ecosystemic development presented a negative relationship with the ecosystems of greater eco-
(H = 9.69, p = 0.0079). On the other hand, Dc and Bc did not show systemic development (e.g. Mahahual) and tended to be independent of
significant differences between the three development stages the trophic level.
(H = 0.86, p = 0.64 and H = 1.24, p = 0.49, respectively).

Fig. 3. Box plot of the attributes of three stages of development identified in the reefs of the Mexican Caribbean. NPP : net primary production, A : ascendency, O :
overhead, DC : development capacity, A/ DC : ascendency/developmente capacity, O/ DC : overhead/development capacity and S : diversity of trophic groups.

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J. Argüelles-Jiménez, et al. Ecological Indicators 110 (2020) 105866

Fig. 4. Box plot of the topological indices in three stages of development identified in the reefs of the Mexican Caribbean. Dc = degree centrality, Cc = closeness
centrality, Bc = betweenness centrality, WD = weighted degree. Different letters indicate significant differences.

4. Discussion

4.1. Ecosystem development stages of the Mexican Caribbean coral reefs

Studies that analyze development attributes in Caribbean Sea coral


reefs are scarce, especially those that use models built with similar
criteria (e.g. Arias-González, 1998; Cobián et al., 2017). From an eco-
logical point of view, the construction of models following the approach
of Opitz (1996) can be considered appropriate since it is based on a
good number of functional groups (and species that integrate them)
which considers the size of the species, their metabolic rates and
trophic similarities. In the definition of trophic groups such attributes
have been considered of vital importance for the construction of eco-
logical models, since they generate a better approximation to describe
the processes that occur within an ecosystem (Abarca-Arenas and
Ulanowicz, 2002; Pinnegard et al., 2005). In this context, the present
study is the first to analyze development gradients for the coral reef
Fig. 5. Canonical Redundancy Analysis (RDA) between the topological indices, ecosystems in the Caribbean Sea under the same ecological construction
the average trophic level per reef and the ecosystem development stages of the scheme. The statistical methods used RDA, NMDS, ANOSIM and
Mexican Caribbean reefs (first axis: F-ratio = 62.054, p = 0.012; second axis: F- SIMPER helped to address the maturity gradient, and showed that the
ratio = 1.591, p = 0.014; 100% of the total variance explained by the first two geomorphological sectors of the Mexican Caribbean with differences in
canonical axes). The dark blue arrows indicate the topological indices: the community structure of fish and corals (e.g. Núñez-Lara et al., 2005;
Dc = degree centrality, Cc = closeness centrality, Bc = betweenness centrality, Arias-González et al., 2008; Arias-González et al., 2011a; Rodríguez-
WD = weighted degree. The sky-blue arrows indicate the average trophic level Zaragoza and Arias-González, 2015) have different stages of develop-
per reef (LTL: low trophic level, ITL: intermediate trophic level, HTL; high
ment. In this way, as the geomorphological and/or structural com-
trophic level): Punta Nizuc (PN), Puerto Morelos (PMo), Punta Maroma (PMa),
plexity of the reefs increases towards the south of the Mexican Car-
Akumal (Aku), Boca Paila (BP), Yuyum (Yy), Punta Allen (PA), Punta Herrero
(PH), Tampalam (Ta), El Placer (EP), Mahahual (Ma), Xahuayxol (Xa) y Xcalak
ibbean, the diversity (Arias-González et al., 2011a), functional diversity
(Xc). The gray arrows denote the development stage (LD: low development, ID: and maturity of the coral reefs also increase.
intermediate development; HD: high development).
4.1.1. Comparison with existing evidence from literature
Legendre (1993) and Legendre and Legendre (2003) suggested that

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J. Argüelles-Jiménez, et al. Ecological Indicators 110 (2020) 105866

Table 4
Comparisons of the ecosystem development attributes with studies conducted on Caribbean Sea reefs.
Categories DA Low development Medium development High development

LDP LGu IDP Ma G&G HDP Ta BP ML IV CCo

G1 PP/R(∼1) 1.031 2.56 1.031 1.25 1 1.03 1.27 1.28 1.6 1.26 5.78
PP/B(+) 8.62 18.28 8.56 12.45 24.33 8.69 14.08 15.6 10.21 – 11.82
B/TST (+) 0.041 0.021 0.041 0.025 0.009 0.04 0.022 0.021 0.036 0.047 0.038

G2 TST(+) 6,803 3,275 10,860 13,169 14,332 22,804 45,202 48,037 71,305 107,473 220,232
NPP(+) 2,389 1,249 3,813 4152 3118 8,006 14,293 15,889 26,043 20,025 98,796
A(+) 6,951 4,095 11,114 18,802 – 23,302 54,142 55,578 96,334 147,524 296,771
O(+) 24,030 8,079 38,466 37,812 – 80,209 105,380 122,523 218,036 290,689 331,127
DC(+) 30,981 12,174 49,579 56,615 – 103,511 159,523 178,101 314,370 438,213 627,897

G3 A/DC(−) 22.43 33.64 22.42 33 – 22.51 34 31 31 33.7 47


O/DC(−) 77.57 66.3 77.59 67 – 77.49 66 69 69 66.3 53
FCI(−) 7.39 7.47 7.4 13.6 – 7.43 14.3 11.7 6.95 18.3 1.6
S(+) 37.4 27 41 13 51 41.3 13 13 21 50 22

DA = Development attributes; G1 = Group one of DA, G2 = Group two of DA, G3 = Group three of DA; LDP = average of the DA for the reefs with a low devel-
opment stage in the present study, LGu7 = La Guajaira (Críales-Hernández et al., 2006), IDP = average of the DA for the reefs with an intermediate development
stage in the present study, Ma = Mahahual (Arias-González 1998; Arias-González et al., 2004), G&G = Grenada and Grenadines (Mohammed 2003), HDP = average
of the DA for the reefs with the highest development stage in the present study, Ta = Tampalam - BP = Boca Paila (Arias-González 1998; Arias-González et al., 2004),
ML = Media Luna - CCo = Cayos Cochinos (Cáceres et al., 2015), VI = Virgin Islands (Opitz 1996).

autocorrelation is a property of gradients, so, in order to increase the 4.2. Topological indices and development stages
knowledge of coral reef ecosystem development, all 12 development
attributes are analized irrespective of whether or not the attributes Coral reef ecosystems contain a great diversity (Reaka-Kudla, 1997)
present collinearity. that is reflected in the complexity of their trophic interactions. Al-
Through statistical analyses used, we distinguish three groups of though Odum (1969) suggests that structural complexity increases in
development attributes: G1) those which have low explanatory power mature ecosystems, the dynamics and structural stability in the process
and high colinearity (PP / R , PP / B , B / TST ); G2) those that help to se- of functional development and maturity are unknown. Considering the
parate development stages (NPP , A , O , DC ), and G3) those that par- information gaps, we use topological indices in trophic networks, be-
tially separate development stages ( A/ DC , O/ DC , S ) (Table 4). Since cause, they have different applications, such as identifying key ecolo-
TST is colinear with A (Table 8), it is included in G2, although for the gical roles (e.g. Sole and Montoya, 2001; Bauer et al., 2010), as well as
FCI the authors suggest including it in G3 because it could separate global temporal (Abascal-Monroy et al., 2015) or spatial patterns. In the
partially stages. On the other hand, we expected that G1 attributes help spatial sense, topological indices helped to test the hypothesis that
to discern gradients at a large geographic scale, as long as the same suggests the existence of differences in the structure of trophic networks
criterion of ecological construction is used and ecosystems with marked due to a spatial geomorphological gradient, which is related to different
variations in their geomorphological development are included. ecosystem development stages. Likewise, through exploration of topo-
Through the three groups of attributes and the development stages logical indices we find two trends. First trend indicates that Cc and DW
identified, comparisons can be made with other studies (Table 4) to indices can differentiate development stages, so, they are proposed as
denote trends in the degree of maturity. Considering the values of the developmental attributes. In the second trend, Dc and Bc indices only
G2 attributes, La Guajaira is considered a reef with low development, denote differences when analyzed together with average trophic level
Grenada and Grenadinas with intermediate development, while Media of the modules and development stages, i.e., the response of these in-
Luna, Cayos Cochinos and Virgin Islands denote greater maturity. dices is masked by trophic level of their substructures (modules).
However, these comparisons should be considered with caution (except Considering that modules are influenced by the strength of trophic in-
for the study carried out in the Virgin Islands), because construction teractions (Stouffer and Bascompte 2011; Zetina-Rejón et al., 2015),
criterion and number of functional groups differ, which affects the re- their application to describe the importance of trophic levels in the
sults of each study. By example, studies that have addressed develop- topology of networks helped to discern the patterns found. On the other
ment attributes for the Mexican Caribbean coral reefs (Arias-González hand, a greater number of modules in reefs considered mature or HD
1998; Arias-González et al., 2004), describe an inverse trend, i.e., a (Table 5) implies greater stability and persistence of their trophic net-
lower ecosystem development stage for southern coral reefs such as works, as suggested by Pimm (1979) and Stouffer and Bascompte
Mahahual and a higher stage for the northern reefs, such as Boca Paila (2011).
reef (Table 4).
These contradictory results may be due to the construction criterion 4.2.1. Comparison with existing evidence from literature
used and the smaller number of functional groups, which are close to Although trends described in Section 4.2 are clear, it is not possible
the limit (n = 12) suggested by Louis-Félix and Sugihara (1997) to re- to delve into other reef systems of the Caribbean Sea because there are
present an ecosystem. Different studies (e.g. Abarca-Arenas and no published studies integrating topological indices and development
Ulanowicz 2002; Krause et al., 2003; Heymans et al., 2014) have attributes. Studies that address topological indices and development
pointed out that both the construction criterion and the number of attributes to a certain extent are those carried out in coastal lagoons
functional groups influence the final values of the development de- (Table 5), ecosystems that according to various studies, such as
scriptors (e.g. A , O and DC ) and the detectability of substructures such Heymans et al., (2014) and those shown in Table 5, are inmature be-
as modules (Krause et al., 2003). Therefore, it is necessary to standar- cause they have low TST values. Despite the information gaps, the in-
dize the criterion of ecological construction to give certainty to these formation analyzed in Table 5 helps to explain and theorize patterns.
comparisons, since incorrect conclusions could be made regarding the In relation to Cc and DW , these were found to describe inverse
ecosystem development stages of the Caribbean Sea reefs. trends, i.e., Cc increases in ecosystems with low development while DW
increases in reefs with high development. The Cc index indicates that in

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Table 5
Comparisons of development attributes and topological indices with studies carried out in coastal lagoons.
Categories DA LDP TLa-1980 TLa-1998 TLa-2011 BMa IDP HDP

G1 PP/R(∼1) 1.031 6.17 3.98 4.49 1.14 1.03 1.03


PP/B(+) 8.62 – – – 9.26 8.56 8.69
B/TST (+) 0.041 0.07 0.06 0.07 – 0.041 0.04

G2 TST(+) 6,803 4,926 2,972 2,080 3,361 10,860 22,804


NPP(+) 2,389 – – – – 3813 8006
A(+) 6,951 5,918 3,667 2,598 – 11,114 23,302
O(+) 24,030 9,014 6,704 4,445 – 38,466 80,209
DC(+) 30,981 14,932 10,371 7,025 – 49,579 103,511

G3 A/DC(−) 22.43 39.63 35.36 36.98 22 22.42 22.51


O/DC(−) 77.57 60.37 64.64 63.28 – 77.59 77.49
FCI(−) 7.39 3.04 4.32 3.65 – 7.4 7.43
S(+) 37.4 40 40 40 30 41 41.3

Topological indices Cc All ITL ITL ITL ITL All All


Bc HTL – – – ITL HTL HTL
Dc HTL – – – ITL HTL HTL
DW ITL LTL LTL LTL/ITL – ILT ITL/HTL
Modules 3 – – – – 3 3.5

DA = Development attributes; G1 = Group one of DA, G2 = Group two of DA, G3 = Group three of DA; LDP = average of the DA for the reefs with a development
stage in the present study, IDP = average of the DA for the reefs with an intermediate development stage in the present study, HDP = average of the DA for the reefs
with the highest development stage in the present study; TLA = Terminos Lagoon (Abascal-Monroy et al., 2015), BMa = Bahía Magdalena (Cruz-Escalona et al.,
2016); All = high values at all trophic levels, HTL = high trophic level, ITL = intermediate trophic level, LTL = low trophic level.

reefs with low development there is easy access to other members of the histories, adaptations and ranges of tolerance to long-term fluctuations)
trophic networks, which may be due to fewer low complexity habitats means that the food availability of predators is unaffected.
(Arias-González et al., 2011a), which generate a smaller number of Hypothetically, if there are coral reefs with even lower stages of
spaces and structures for protection against predators; as a con- development, such as those suggested by Chávez and Hidalgo (1988)
sequence, all trophic levels (based on the modules) have a high and and Chávez et al., (2007), in the Gulf of Mexico (which have evolved in
similar access to the members of the networks. It has been shown that eutrophic environments) (Salas-Pérez et al., 2015; Jordán-Garza et al.,
when the complexity and number of habitats increase, the vulnerability 2017), then it is possible that their flow control would be bottom-up
of prey to predators is reduced (Claro et al., 1990; Cobián et al., 2016, (similar to that of coastal lagoons) (Abascal-Monroy et al., 2015) and
2017), resulting in reduced access to members of the community net- the energy recycling would be lower, as suggested by Ulanowicz
work and a greater richness and abundance of fish, as occurs in the (1986). Under this argument, a gradient in flow control is perceived for
south of the Mexican Caribbean (Núñez-Lara et al., 2005; Arias- different stages of development, being bottom-up in immature ecosys-
González et al., 2011a). This trend is not the same in coastal lagoons tems, wasp-waist in ecosystems with intermediate development and
with low development (Table 5), possibly due to two factors: 1) dif- top-down in mature ecosystems. To determine if this hypothesis is true,
ferent ecological processes: for example, high productivity results in the it is necessary to address reefs with different levels of geomorphological
greatest access to members of the network through intermediate trophic development, under different physicochemical conditions and under
levels that interact strongly with higher and lower trophic levels the same ecological construction scheme.
(Abascal-Monroy et al., 2015; Cruz-Escalona et al., 2016), and 2) the On the other hand, the number of connections and the degree of
maturity scale; it is important to consider that the G1 attributes of the intermediation was the same for the three development stages of the
Mexican Caribbean tend to be similar in the three development stages studied reefs. Despite this, the higher trophic levels were notable for
of the reefs studied. Therefore, if these attributes are useful at a large presenting a greater number of connections and a position of great
development scale, then, theoretically, reefs can ocurr with even lower importance in trophic intermediation. This is contrary to that reported
development stages than that described for the northern Mexican Car- by Cruz-Escalona et al., (2016) in estuarine ecosystems with a low
ibbean, as conceptualized by Chávez and Hidalgo (1988) and Chávez development stage such as Bahía Magdalena where trophic groups with
et al., (2007). These would tend to have characteristics in common with a high Dc and Bc have intermediate trophic levels (Table 5). The
less developed ecosystems, such as the coastal lagoons of Table 5. Magdalena Bay trend is consistent for other estuarine systems; hence
For ecosystems with low development, such as the Términos lagoon Scotti and Jordán (2010) suggested that greater emphasis should be
(Table 5), during three annual periods, the highest DW was present at placed on intermediate positions in conservation policies rather than
the lower trophic levels, i.e. the control of the energy flow was bottom- final predators. However, the position and importance of the species
up (Abascal-Monroy et al., 2015) due to the large primary production and/or trophic groups may depend on the development stage of an
characteristic of this type of ecosystem (Lara-Domínguez et al., 2011). ecosystem in such a way that the management policies must be directed
In contrast, the reefs of the Caribbean Sea present a wasp-waist control, towards the particular characteristics of each ecosystem. For example,
with the exception of several reefs with high development, which in estuarine ecosystems it is important to protect intermediate trophic
present a top-down control. The systems that generally exhibit a wasp- levels, while in reefs, such as those of the Mexican Caribbean, efforts
waist control are those of upwelling regions, in which few species of should be focused on preventive actions of protection for species of
intermediate trophic level are vital for their large biomasses (e.g. an- higher trophic levels.
chovies, sardines). However, long-term fluctuations can alter the bal- Finally, bearing in mind the patterns obtained between topological
ance of the system by affecting its abundance and therefore alter the indices and development stages, their use in the detection of develop-
food provision of those who prey on them (Cury et al., 2000). Despite mental stages can be considered in conjunction with attributes pro-
having detected a wasp-waist control in the reefs of the Mexican Car- posed by Odum (1969) and Ulanowicz (1986). Therefore, Dc and Bc
ibbean, this can favor their persistence and resilience, since the great can be considered within the G1 attributes since they can indicate
diversity of prey at the intermediate trophic level (with different life broad scales, Cc in G2 since it differentiates three development stages

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Table 6
Functional groups for each Mexican Caribbean coral reefs.
Functional groups PN PMo PMa Aku BP Yy PA PH Ta EP Ma Xa Xc

Large sharkslrays, carnivorous – – – – 1 – – – 1 – 1 – 1


Sharks/scombrids, carnivorous – – – – – 1 1 – – 1 1 – 1
Large jacks, carnivorous – – – – – – – – – 1 – – –
lntermediate jacks, carnivorous 1 1 1 1 1 1 1 1 1 1 1 1 1
lntermediate reef fish, carnivorous 1 1 1 1 1 1 1 1 1 1 1 1 1 1
Large-intermediate schooling fish, pelagic – – – – – – – – – – 1 – –
lntermediate reef fish, carnivorous 2 1 1 1 1 1 1 1 1 1 1 1 1 1
Kyphosidae, herbivorous – 1 1 1 1 1 1 1 1 1 1 1
lnterrnediate reef fish, herbivorous 1 1 1 1 1 1 1 1 1 1 1 1 1 1
lnterrnediate reef fish, herbivorous 2 – – – – – – – – – – 1 1 1
Large reef fish, carnivorous 1 1 1 1 1 1 1 1 1 1 1 1 1
Intermediate reef fish, carnivorous 3 1 1 1 1 1 1 1 1 1 1 1 1 1
Small reef fish, carnivorous 1 1 1 1 1 1 1 1 1 1 1 1 1 1
Small reef fish, carnivorous 2 1 1 1 1 1 1 1 1 1 1 1 1 1
Large groupers, carnivorous – – 1 1 1 1 – – 1 1 1 1
lntermediate reef fish, carnivorous 4 1 1 1 1 1 1 1 1 1 1 1 1 1
Small reef fish, omnivorous 1 1 1 1 1 1 1 1 1 1 1 1 1 1
Small reef fish, omnivorous 2 1 1 1 1 1 1 1 1 1 1 1 1 1
Small reef fish, omnivorous 3 – – – – 1 1 – – 1 – – – 1
Large Scaridae, herbivorous 1 – 1 1 1 1 1 – 1 1 1 1 1
lntermediate Scaridae, herbivorous 1 1 1 1 1 1 1 1 1 1 – – –
Small Scaridae, herbivorous 1 1 1 1 1 1 1 1 1 1 1 1 1
Blenniidae, herbivorous – – – – 1 1 – 1 1 – – – 1
Small Gobiidae, carnivorous – 1 1 1 – 1 1 1 1 1 1 1 1
Dolphins 1 1 1 1 1 1 1 1 1 1 1 1 1
Seabirds 1 1 1 1 1 1 1 1 1 1 1 1 1
Squids 1 1 1 1 1 1 1 1 1 1 1 1 1
Seaturtles 1 1 1 1 1 1 1 1 1 1 1 1 1
Octopuses 1 1 1 1 1 1 1 1 1 1 1 1 1
Lobsters 1 1 1 1 1 1 1 1 1 1 1 1 1
Crabs 1 1 1 1 1 1 1 1 1 1 1 1 1
Shrimp/Stomatopod 1 1 1 1 1 1 1 1 1 1 1 1 1
Small benthic arthropods 1 1 1 1 1 1 1 1 1 1 1 1 1
Asteroids 1 1 1 1 1 1 1 1 1 1 1 1 1
Echinoids 1 1 1 1 1 1 1 1 1 1 1 1 1
Grastropods 1 1 1 1 1 1 1 1 1 1 1 1 1
Chitons/Scaphopods 1 1 1 1 1 1 1 1 1 1 1 1 1
Polychaete/Priapuloid/Ophiuroids 1 1 1 1 1 1 1 1 1 1 1 1 1
Bivalves 1 1 1 1 1 1 1 1 1 1 1 1 1
Sponges 1 1 1 1 1 1 1 1 1 1 1 1 1
Corals/Sea anemones 1 1 1 1 1 1 1 1 1 1 1 1 1
Zooplankton 1 1 1 1 1 1 1 1 1 1 1 1 1
Decomp/Microfauna 1 1 1 1 1 1 1 1 1 1 1 1 1
Phytoplankton 1 1 1 1 1 1 1 1 1 1 1 1 1
Benthic producers 1 1 1 1 1 1 1 1 1 1 1 1 1
Detritus 1 1 1 1 1 1 1 1 1 1 1 1 1

The key to the reefs is shown in Fig. 1.

Table 7 Table 8
PREBAL analysis among the trophic level (TL) with three vital biological de- Marginal effects (Lambda) obtained from the forward selection summary and
scriptors: P/B, Q/B and B. inflation values (colinearity) obtained from the RDA.
Coral reef TL vs Log10 P/B TL vs Log10 Q/B TL vs Log10 B DA Lamda IF1 IF2 IF3

n r p-value n r p-value n r p-value A/CD 0.25 15.7 0 5.3


O/DC 0.25 0 0 0
PN 33 −0.46 ** 31 −0.35 * 36 −0.7 *** S 0.24 0 2.4 3.3
Pmo 33 −0.46 ** 31 −0.36 * 37 −0.71 *** TST* 0.24 98975.7 94420.6 –
Pma 34 −0.43 ** 33 −0.34 * 38 −0.69 *** NPP 0.24 0 0 8.9
Aku 36 −46 ** 33 −0.3 * 39 −0.7 *** A 0.24 0 94741.3 0
BP 38 −0.5 ** 36 −0.42 * 39 −69 *** O 0.24 97522.6 0 0
Yy 39 −0.49 ** 35 −0.4 * 42 −0.6 *** DC 0.24 0 0 0
PA 36 −0.48 ** 34 −0.4 * 39 −0.72 *** FCI*** 0.12 0 – –
PH 34 −0.52 ** 30 −0.41 * 35 −0.73 *** B/TST** 0.08 1795.7 – –
Ta 37 −0.47 ** 36 −0.38 * 41 −0.52 ** PP/B** 0.08 1499.3 – –
EP 38 −0.49 ** 36 −0.41 * 37 −0.6 *** PP/R** 0.04 29 – –
Ma 38 −0.53 ** 37 −0.44 ** 42 −0.69 ***
Xa 36 −0.45 ** 34 −0.37 * 39 −0.67 *** DA: development attributes, IF: Inflation factor and subscripts 1, 2, 3 correspond
Xc 40 −0.5 ** 38 −0.43 ** 43 −0.54 ** to the three RDA models made to obtain the lowest colinearity. *** Attribute
with little explanatory power and low colinearity discarded in the first model;
The key to the reefs is shown in Fig. 1. Significance of the p-value: * for ** Attributes with little explanatory power and high colinearity that were
p < 0.05, ** for p < 0.01 and *** for p < 0.0001. discarded in the first model (IF1); * Attribute that due to its high colinearity was
discarded in the second model (IF2).

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Declaration of Competing Interest González, G.S., Chevalier, P.P.M., García, A.R., Herrera, R.P., Perera, S.V., Caballero,
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marinas protegidas del Caribe y su relación con el pez león. Rev. Biol. Trop. 66 (1),
The authors declare that they have no known competing financial
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ence the work reported in this paper. E.S., García, A.R., Fernández, A.O., Espinosa, L.P., Cabrera, D.G., Pantoja, L.M.E.,
Caballero, H.A., Perera, S.V., 2016. Density, size, biomass, and diet of lionfish in
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arrecifes coralinos en el Corredor Cancún-Tulum, Quintana Roo, México. Sian Káan.
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