Synergistic Antimicrobial Effect of Ging

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University of San Agustin

COLLEGE OF HEALTH AND ALLIED MEDICAL PROFESSION


MEDICAL LABORATORY SCIENCE PRORAM

SYNERGISTIC ANTIMICROBIAL EFFECT OF GINGER (Zingiber officinale)

ETHANOLIC EXTRACTS AND PROBIOTIC (Lactobacillus casei) AGAINST

ENTERIC PATHOGENIC BACTERIA

A Research Presented to the Faculty of the

College of Health and Allied Medical Professions

MLS Program

In Partial Fulfillment of the Requirements for the Degree of

Bachelor of Science in Medical Laboratory Science

BESAS, Analiza
CASADOR, Rochelle Dominique
CASTILLO, Armeline
CERCADO, Mayz
CHAVEZ, Euna Grace
DEL CASTILLO, Ma. Angelica
DITALO, James Dominic

November, 2020
University of San Agustin
COLLEGE OF HEALTH AND ALLIED MEDICAL PROFESSION
MEDICAL LABORATORY SCIENCE PRORAM

Table of Contents

Title Page

CHAPTER

1. INTRODUCTION

Background and Rationale 1

Objectives of the Study 2

Hypothesis 4

Research Framework 4

Significance of the Study 5

Scope and Delimitations 6

Definition of terms 7

2. REVIEW OF RELATED LITERATURE

Gastrointestinal Infection 13

Antibiotics and Antimicrobial Resistance 14

Zingiber officinale 16

Antimicrobial Activities of Ginger 17

Probiotics and Lactobacillus casei 19

Antimicrobial Activities of Probiotics and L. casei 22

Escherichia coli Pathotype 23

Staphylococcus aureus Pathotype 25

Synthesis 27

3. METHODOLOGY

Research Design 29

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Social Preparations and Ethical Considerations 29

Sampling Design and Sample Size Determination 30

Procedures/Methods 31

Data Processing 35

Data Analysis 36

REFERENCES 37

APPENDICES

A. Draft of Letter to the Research Laboratory In-charge 42

B. Schematic Diagram of Research Procedures 44

TIMETABLE FOR RESEARCH PROPOSAL 50

BUDGETARY REQUIREMENTS 51

DUMMY TABLE 52

CURRICULUM VITAE 54

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Chapter 1

INTRODUCTION

Background and rationale

A significant burden of acute and chronic illness is induced by gastrointestinal

infections, with diarrhea being the most frequent manifestation. According to the

Epidemiology Bureau Department of Health, there were 61, 281 cases or 59.1 rate of

acute bloody diarrhea in the Philippines in 2016, while there was 109.1 rate of acute watery

diarrhea, mostly were caused by bacterial and parasitic infections (DOH, 2016).

Conversely, use of antibiotics could cause adverse complications and bacterial resistance

to antimicrobial drugs is increasing worldwide (Rahmani et al., 2014) such that rate of

resistance to ciprofloxacin varied from 8.4% to 92.9% for E. coli and from 4.1% to 79.4%

for K. pneumoniae according to Global Antimicrobial Resistance and Use Surveillance

System (GLASS) (WHO, 2020).

Zingiber officinale (ginger) is a plant used in traditional medicine against different

diseases because of its various properties (antimicrobial, antioxidant, anti-inflammatory,

etc.) and recognized as “safe” by the US Food and Drug Administration. Ginger contains

monoterpenoids, sesquiterpenoids, phenolic compounds, and its derivatives which

provide a broad antimicrobial spectrum against different microorganisms (Beristain-Bauza

et al., 2019). Ethanol extracts of this rhizome showed remarkable activity against various

microorganisms with the highest activity on E. coli (Yusha’u et al., 2008) and also have

shown a wide range of influence on gram-positive aerobic bacteria especially in the area

of influence on tested staphylococci (Santo-Grace et al., 2017).


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The probiotics are first described by Lilley and Stillwell as substances secreted by

one microorganism that stimulated another's growth and were later used to describe tissue

extracts that stimulated microbial growth (Nazir et al., 2018). Being enteric in nature,

probiotics do not have any parasitic or pathogenic effect on humans as they retard the

growth of harmful microorganisms and are very potent against pathogens protecting the

enteric flora (Shipradeep et al., 2012). Probiotics help the infantile immune system by

lowering the pH of the gut, rendering it unsuitable for pathogenic bacteria to

survive. Lactobacillus is one of a number of probiotics considered to be biological

therapeutics and host immune-modulating biologicals that are generally recognized as

safe (Chen et al., 2019).

Prakasita et al. (2019) reported that the tested combinations of herbs and

probiotics can adhere to the intestinal tract. Studying the collective antimicrobial activities

of ginger and probiotics may help find alternative solutions in improving antibiotic formulas

without any harmful side effects to the immune system and to the body’s microbiota and

it will also help reduce morbidity of gastrointestinal diseases.

Objectives of the study

The main purpose of this study is to determine the synergistic antimicrobial effect

of ginger ethanolic extract and the probiotic Lactobacillus casei Shirota strain against

enteric pathogenic bacteria such as Escherichia coli and Staphylococcus aureus.

Specifically, it aims to:


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1. determine the minimum inhibitory concentration of ginger ethanolic extracts by

disk diffusion method to be used in the succeeding assay;

2. determine the zone of inhibition of the following preparations on Escherichia coli

and Staphylococcus aureus using disk diffusion method:

a. 1 ml ginger ethanolic extracts (1mg/ml)

b. 1 ml Lactobacillus casei Shirota strain cell-free supernatant

c. 1:1 proportion of ginger ethanolic extracts and Lactobacillus casei Shirota

strain

d. 2:1 proportion of ginger ethanolic extracts and Lactobacillus casei Shirota

strain

e. 1:2 proportion of ginger ethanolic extracts and Lactobacillus casei Shirota

3. determine if there is a significant difference in the zones of inhibition produced by

the following preparations on Escherichia coli and Staphylococcus aureus:

a. 1 ml ginger ethanolic extracts (1mg/ml)

b. 1 ml Lactobacillus casei Shirota strain cell-free supernatant

c. 1:1 proportion of ginger ethanolic extracts and Lactobacillus casei Shirota

strain

d. 2:1 proportion of ginger ethanolic extracts and Lactobacillus casei Shirota

strain

e. 1:2 proportion of ginger ethanolic extracts and Lactobacillus casei Shirot


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Hypothesis

There is no significant difference in the zones of inhibition produced by ginger

ethanolic extracts, Lactobacillus casei Shirota strain, and their combinations in different

proportions on Escherichia coli and Staphylococcus aureus.

Research framework

Dependent Variables
Independent Variables

serial dilutions of ginger ethanolic Minimum inhibitory


extracts concentration (MIC) and
zone of inhibition on
1000 μg/ml - 100μg/ml
a. Escherichia coli
b. Staphylococcus
Treatment 1: aureus
1mL Ginger ethanolic extract (1mg/ml
conc.)
Treatment 2:
1mL Lactobacillus casei Shirota strain
cell free supernatant

Treatment 3: zone of inhibition produced


1:1 proportion of ginger ethanolic on
extracts and Lactobacillus casei Shirota
a. Escherichia coli
Treatment 4:
b. Staphylococcus
2:1 proportion of ginger ethanolic
aureus
extracts and Lactobacillus casei Shirota
Treatment 5:
1:2 proportion of ginger ethanolic
extracts and Lactobacillus casei Shirota

Figure 1. Research Framework


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Based on the theory of Debalke et al. (2018), aqueous-ethanolic plant extracts

solutions have been used to determine the zone of inhibition to cultures of E. coli and

S. aureus. It showed that the zone of inhibition and susceptibility of the microorganisms to

the solutions varies depending on the concentration of the extracts added to each plate

media.

Generally, zones of inhibition mean of the antibacterial activity of the plant extract

depends on its concentrations and on the strain of tested bacteria (Hasan et al., 2012).

Lactobacillus can produce lactic acid, acetic acid, formic acid and other acids to reduce

intestinal pH and demonstrated its ability to inhibit several bacterial pathogens,

including Escherichia coli and Staphylococcus aureus (Chen et al., 2019).

The research paradigm presented above depicts the independent and dependent

variables of the study. Ginger ethanolic extract and Lactobacillus casei Shirota strain and

their combinations as listed are considered as the independent variables. On the other

hand, the minimum inhibitory concentration and zone of inhibition produced by these

preparations on Escherichia coli and Staphylococcus aureus are considered as the

dependent variables. This research paradigm is based on the report of Shipradeep et al.

(2012) that probiotics and essential extracts both have a great potential in terms of their

synergistic effect against microbial gut which is normally higher than any known drug due

to their complementary actions.

Significance of the study

The results of the study may be beneficial to the following:


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Community. The study will help the community of both adults and children find

alternative remedy in treating certain illness especially those with gastrointestinal

diseases. This will also benefit them in lowering the risk of being susceptible against

enteric pathogenic bacteria.

Health professionals. Studying the collective antimicrobial activities of ginger and

probiotics may enhance the knowledge to help find alternative solutions in improving

antibiotic formulas without any harmful side effects to the immune system and to the

body’s microbiota and to help reduce morbidity of gastrointestinal diseases.

Future researchers. This study may serve as related literature for future

researchers.

Scope and delimitations

This study aims to determine the synergistic antimicrobial effect of ethanolic

extracts of Zingiber officinale and Lactobacillus casei Shirota strain against Escherichia

coli and Staphylococcus aureus, in vitro.

This study will be conducted by the researchers at the University of San Agustin

Medial Technology Laboratory in the 2nd semester of Academic year 2020-2021. Only the

ethanolic extract of ginger and commercially available Lactobacillus casei Shirota strain

will be tested in this study.

Tests organisms to reflect the synergistic antimicrobial effect of ginger and

commercially available Lactobacillus casei Shirota strain and their different combinations

will be limited only to Escherichia coli and Staphylococcus aureus.


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Minimum inhibitory concentration of ginger ethanolic extracts will be determined

using disk diffusion by series of dilutions to prepare different extract concentrations.

Similarly, synergistic antimicrobial effect of ginger and Latobacillus casei Shirota strain will

also be indicated by the zone of inhibition produced on the test organisms using the disk

diffusion method. This study will be performed in three trials with five replicates per trial.

Definition of terms

To promote understanding between the researchers and the readers, the following

terms related to the study are defined as follows:

Synergistic implies the combined effect of two or more agents that is greater than

the sum of their individual effects (Forbes, 2016).

In this study, it refers to the collective or collaborative antimicrobial effect of ginger

ethanolic extract and Lactobacillus casei Shirota strain to the test bacteria, Escherichia

coli and Staphylococcus aureus.

Antimicrobial is a chemical substance produced either by a microorganism or by

synthetic means that is capable of killing or suppressing growth of microorganism (Forbes,

2016).

In this study, antimicrobial refers to ability of the ginger ethanolic extract and

Lactobacillus casei Shirota strain and their combinations to inhibit the growth of the test

bacteria, Escherichia coli and Staphylococcus aureus as indicated by the zone of inhibition

produced using the disk diffusion method.


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Effect refers to a cause, a result or consequence or a bring about of an action

(Oates & Enquist, 2013)

In this study, effect refers to the influence of ginger ethanolic extract and

Lactobacillus casei Shirota strain and their combinations to the test bacteria, Escherichia

coli and Staphylococcus aureus in terms of zone of inhibition produced using the disk

diffusion method.

Ginger is also known as Zingiber officinale belongs to Zingiberaceae family that

have strong aromatic and medicinal properties, and are characterized by their tuberous or

non-tuberous rhizomes (Santo Grace et al., 2017).

In this study, ginger is a sample used as a source of ethanolic extracts for

investigation of its antimicrobial properties in combination with Lactobacillus casei Shirota

strain against the test bacteria, Escherichia coli and Staphylococcus aureus by measuring

the zone of inhibition produced using the disk diffusion method.

Ginger ethanolic extract refers to the extract obtained when ginger powder is

mixed with 95% ethanol incubated at room temperature for 72 hours then filtered with

Whatman filter paper and concentrated using a rotary evaporator at 78°C (Yadufashije et

al., 2020).

In this study, ginger ethanolic extract refers to the isolates separated from ginger

rhizome that will be tested for its antimicrobial effect in synergism with Lactobacillus casei

Shirota strain to the test bacteria, Escherichia coli and Staphylococcus aureus.
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Lactobacillus casei Shirota strain is a strain discovered by Dr. Minoru Shirota

and considered to belong in the genus Lactobacillus producing lactic acid that has been

scientifically proven to reach the intestine alive (Lactobacillus casei, 2020).

In this study, Lactobacillus casei Shirota strain will be used to investigate its

antimicrobial effect in combination with ginger ethanolic extracts to the test bacteria,

Escherichia coli and Staphylococcus aureus by measuring the zone of inhibition produced

using the agar well diffusion method.

Probiotic refers to the substances secreted by one microorganism that stimulated

another's growth (Nazir et al. 2018).

In this study, probiotic refers to the Lactobacillus casei Shirota strain which can be

obtained from a commercial probiotic product and tested for their antimicrobial effect in

combination with ginger ethanolic extracts to Escherichia coli and Staphylococcus aureus.

Escherichia coli is a Gram-negative bacillus commonly found as a commensal in

the human microbiota (Rojas-Lopez et al., 2018).

In this study, Escherichia coli, specifically it’s pathogenic strain, is used as the test

bacteria to determine the synergistic antimicrobial effect of ginger ethanolic extracts and

Lactobacillus casei Shirota strain which will be measured using disk diffusion method.

Staphylococcus aureus is a gram-positive bacterium and one of the most

common causative agents of wide range infective diseases such as skin infections,

bacteremia, endocarditis, pneumonia and food poisoning (Enany et al., 2017).

In this study, Staphylococcus aureus, specifically it’s pathogenic strain, is used as

the test bacteria to determine the synergistic antimicrobial effect of ginger ethanolic
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extracts and Lactobacillus casei Shirota strain which will be measured using disk diffusion

method.

Minimum Inhibitory Concentration is defined the concentration giving the least

inhibitory activity and below which there is no further inhibition (Rahman et al., 2020).

In this study, this will be used to determine the lowest concentration of ginger

ethanolic extract that could inhibit growth of Escherichia coli and Staphylococcus aureus

by serial dilutions to prepare different extract concentration.

Zone of Inhibition is a circular area around the spot of the antibiotic in which

the bacteria colonies do not grow and can be used to measure the susceptibility of the

bacteria towards antibiotic (Bhargav et al., 2016)

In this study, it refers to the method used to determine the antimicrobial effect of

ethanolic extracts and Lactobacillus casei Shirota strain and their combination to the test

bacteria, Escherichia coli and Staphylococcus aureus.

In vitro refers to the technique of performing a given procedure in a controlled

environment outside of a living organism (Seladi-Schulman, 2019)

In this study, it pertains to the means used to determine the effectivity of ginger

ethanolic extracts, Lactobacillus casei Shirota strain and their combination to the test

bacteria, Escherichia coli and Staphylococcus aureus by measuring the zone of inhibition

through disk diffusion method.

Disk diffusion method is classified as an agar diffusion method and uses a filter

paper disk saturated with the plant extract, which is placed on top of an agar surface to

measure the inhibition zone (Horváth et al., 2016).


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In this study, disk diffusion method refers to the technique which will be used to

measure the zone of inhibition produced by ginger ethanolic extract, Lactobacillus casei

Shirota strain and their combinations to the test bacteria, Escherichia coli and

Staphylococcus aureus.
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Chapter 2

REVIEW OF RELATED LITERATURE

Gastrointestinal disorders with presentation of diarrhea has been a relevant health

problem in the Philippines which are usually common among children. It was known to be

acquired from commercially and homely formulated foods without the observance of

cleanliness upon preparation which eventually makes food become a vehicle for

pathogens.

Ninety five percent (95%) of the disease manifestations that were described for the

food-borne disease outbreaks (FBDOs) since 2005 as reported by Azanza et. al (2018)

associated with multiple food vehicles with unknown etiological agents of illnesses were

gastrointestinal symptoms including vomiting, diarrhea, and stomach ache. In relation to

this, it was also stated that eleven (11) morbidity cases linked to FBDO were caused by

the pathogenic strain of Escherichia coli manifesting the same symptoms with

gastrointestinal disorders while 1.24% were due to staphylococcal enterotoxins.

As the setback with gastrointestinal diseases associated with enteric pathogens

and the evolution of these pathogens into a more resistant specie continue to arise,

studies for the provision of adequate treatment has also been constantly developed with

more focus on the antibacterial properties of plants to produce antibiotics with no harmful

side effects. Having all the prevalent problems in different places, this study primarily aims

to determine the synergistic effect of the antimicrobial properties of Zingiber officinale

(Ginger), specifically its ethanolic extract, and probiotic supplement specifically

Lactobacillus casei against certain enteric bacteria.


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So, this chapter provides discussions on the variables and their relationship in

relevance with the study and the explanations regarding the standpoint on why the study

exists to answer the objectives at hand. Furthermore, this portion also includes the

methodologies used by the related studies to arrive at a specific method that could be

appropriately used by this research.

The chosen references included recent research reports, journals, evaluative

reports, reviews of literature, a dissertation, essays and articles pertaining to Zingiber

officinale, probiotics, and enteric pathogenic bacteria.

Gastrointestinal Infections

Gastrointestinal (GIT) diseases contribute greatly to the worldwide burden of

infectious diseases with diarrhea as the second leading cause of preventable illness in

children under the age of five (Fletcher, McLaws, & Ellis, 2013).

As revealed in the study of Karimi et al. (2018), approximately one billion cases of

diarrhea occur in children younger than 5 years, annually, of which around 4.5 million lose

their lives. Due to this, many studies have been conducted to evaluate pathogens causing

diarrhea, as well as innovative and effective treatment methods worldwide. It was

demonstrated that after viruses, bacteria are the second causative agents in diarrhea with

almost 30% cases with high treatment costs (Karimi et al., 2018).

Moreover, a review of the literature world-wide indicates that a causative organism

is identified in about 50% of symptomatic cases and the majority of gastrointestinal

illnesses can be transmitted through the fecal-oral route. A significant proportion, about
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36%, of gastrointestinal illnesses is attributable to food borne transmission. Among all

illnesses attributable to food borne transmission, 30% are caused by bacteria, 3% by

parasites, and 67% by viruses (Fletcher, McLaws, & Ellis, 2013).

In Australia about 32% of all gastroenteritis are food-borne,

and Campylobacter, non-typhoid Salmonella, pathogenic E. coli and norovirus are

responsible for over 80% of foodborne illness from known pathogens (Fletcher, McLaws,

& Ellis, 2013).

Meanwhile, in the Philippines, 95% of the disease manifestations with food-borne

disease outbreak since 2005, were mostly associated with bacterial pathogens. The

highest incidences involving multiple food vehicles were institutionally prepared, followed

by home prepared foods as indicated in the study of Azanza et. al., 2018. For example,

poisoning caused by the durian candy was the third multiple household outbreak that was

distributed in the entire region of CARAGA (southern part of the Philippines), and was

found out to be contaminated with S. aureus reflecting 1.24% of the FBDOs cases due to

staphylococcal toxin.

Gastrointestinal diseases affect both resource-rich and less developed countries,

despite the clear correlation between gastrointestinal diseases and factors such as poor

sanitation, insufficient access to clean drinking water, and other risk factors.

Antibiotics and antimicrobial resistance

The increase usage of antibiotics has induced microorganisms to acquire

resistance factor which have become a burning predicament. In general, bacteria present
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in the biofilm culture are more resistant to antimicrobials than planktonic extracts (Santo

Grace et al., 2017). To compensate with this, there is an urgent need to find alternative

chemotherapeutic drugs in diseases treatment particularly those of plant origin, which are

easily available and have considerably less side effect.

According to Belda Junior et al. (2007), the emergence of new infectious diseases,

the revival of many seemingly controlled infections and the rise in bacterial resistance

have created the need for studies aimed at developing new antimicrobials. Given the

inability of microorganisms to develop new molecules with antimicrobial properties,

refining the screening methods used to distinguish antimicrobials from other natural

sources is of great importance.

For the past decades, many researches have established the side effect of

overused and misused antibiotic which can harm vital organs as well as their impact on

the immune system and in the normal flora of the body. Due to this, the known success of

traditional medicine has guided the search for new chemotherapeutic alternatives to

eliminate the infections caused by drug-resistant microbes and to reduce the harm caused

by antibiotic (Bocanegra-Garcia et al., 2009).

Antibiotics can selectively decrease tissue invasion and eliminate aggressive

bacterial species or decrease luminal and mucosal bacterial concentrations, depending

on their spectrum of activity. So, rational use of antibiotic is the key approach to improve

the antibiotic performance and tackling of the antimicrobial resistance. The efficacy of

antimicrobials is influenced by many factors: (1) bacterial status (susceptibility and

resistance, tolerance, persistence, biofilm) and inoculum size; (2) antimicrobial


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concentrations (mutant selection window and sub-inhibitory concentration); (3) host

factors (serum effect and impact on gut micro-biota) (Li et al., 2017).

Therefore, further understanding of the link between antimicrobial uses, bacterial

status and host reaction provides new insights and stimulates the analysis to evolving

antimicrobial treatment regimens that produce improved clinical results and reduce

resistance at the same time.

Zingiber officinale

Due to their significant antimicrobial principles and phytoconstituents and broader

therapeutic abilities, traditional herbs have been a valuable source of medicine in virtually

all cultures and societies worldwide.

One of the traditional medicines widely used to treat various illnesses is the ginger

rhizome. Zingiber officinale or simply ginger belongs to Zingiberaceae family that have

strong aromatic and medicinal properties, and are characterized by their tuberous or non-

tuberous rhizomes. The rhizome is rich in secondary metabolites such as phenolic

compounds (gingerol, paradol and shogaoal), volatile sesquiterpenes (zingiberene and

bisabolene) and monoterpenoids (curcumene and citral) (Santo Grace et al., 2017).

Zingiber officinale has been widely used all over the world since antiquity for a wide

array of unrelated ailments including arthritis, cramps, rheumatism, sprains, sore throats,

muscular aches, pains, constipation, vomiting, hypertension, indigestion, dementia, fever,

and infectious diseases (Ali, 2008 as stated in Santo Grace et al., 2017).
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Because of the extensive use of this rhizome, studies confirmed that ginger have

anti-inflammatory, anti-thrombotic, cholesterol-lowering, blood pressure-lowering, anti-

microbial, anti-oxidant, anti-tumor, and hypoglycemic properties (Shahrajabian et al.,

2019), but the most relevant property attributed to this study is its antimicrobial properties.

Due this property as well as its easy availability, it was used in several medicinal plant

extraction researches that have shown direct antimicrobial properties against pathogenic

agents (Al-Juraifani, 2011, as cited in Abd El-Khalek, et al., 2016), thus can be used in

treatment of bacterial infection and generally recognized as safe (GRAS) by the US FDA

(Kamrul et al. 2014, as cited in Yadufashije et al., 2020) as well as by the Aliment and

Drug Administration of Egypt for utilization as pabulum supplement (Abd El-Khalek et al.,

2016).

Antimicrobial activities of ginger

The antibacterial and inhibition activities of ginger extracts could be attributed to

its chemical properties (Kamrul et al., 2014, as cited in Yadufashije et al., 2020), with

zingiberene sesquiterpenoids as the main component. Furthermore, according to the

study of Garvey et al. (2009), the extracts are active at high concentration and inactive at

very low concentrations based on the results of the bacterial growth inhibition (Yadufashije

et al., 2020) suggesting that inhibition activities were dose-dependent (Foustine et al.,

2019).

In vitro experiments have shown that active ginger constituents prevent colon

bacteria from multiplying. These bacteria, which cause flatulence, ferment undigested

carbohydrates which could be retorted by ginger (Yadufashije et al., 2020). Ginger


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essential oil and ethanolic extract showed different degree of antibacterial activity against

food-borne bacteria due to the compound contained within respective extracts and these

demonstrate that there may be different antibacterial activity in different ginger extracts

(Foustine et al., 2019).

In relation to this, some studies, as revealed in the study of Abd El-Khalek et al.

(2016), investigated the antimicrobial property of the volatile oil extracted from ginger

rhizomes and showed inhibition activity against Aspergillus niger, Saccharomyces

cerevisiae, and Bacillus cereus, which were determined using disc diffusion method.

In the same study conducted by Yadufashije et al., (2020) using the soybean oil

extract of ginger, it has shown that at boiling temperature, this extract has potential

antimicrobial activities with highest zone of inhibition (11.67±1.53mm) against Salmonella

spp. and lowest zones of inhibition (8.0±1.73mm, 8.67±2.52mm) against Escherichia coli

and Staphylococcus aureus.

Moreover, Z. officinale ethanolic extract has also displayed a wide range of

influence on gram-positive aerobic bacteria and as experimented, has confirmed its

significance, especially in its area of influence on tested staphylococci (Santo Grace et al.,

2017) as well as on Bacillus. spp. E. coli, and Salmonella spp. (Onyeagba et al. 2004, as

cited in Abd El-Khalek et al., 2016). Meanwhile, ginger methanolic extracts presented an

extent of inhibition sensitivity in terms of zones of inhibition against different gram-negative

bacteria using paper disk method (Malik, 2015, as cited in Abd El-Khalek et al., 2016).

In the study conducted by Foustine et al. (2019), in which ginger essential oil and

ginger ethanolic extract antimicrobial activities were compared using disk diffusion method

against four types of food-borne bacteria, it was revealed that ginger essential oil denoted
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a much wider activity against E. coli, B. subtilis, S. typhi, and S. aureus than ginger

ethanolic extracts. However, Yassen & Esmaeel (2016), indicated that ethanolic,

methanolic, and hexanoic extracts of ginger produced marked inhibitory effect on S.

aureus and E. coli than aqueous and acetonic extracts on microorganism test.

Therefore, as stated by Foustine et al., (2019), different ginger extraction methods

can result in various antimicrobial properties due to the different extracted substances.

Probiotics and Lactobacillus casei

Lilley and Stillwell first used the term “probiotics” to describe substances secreted

by one microorganism that stimulated another's growth and were later used to describe

tissue extracts that stimulated microbial growth and supplements of animal feed that have

a beneficial impact on animals by adding to their balance of intestinal flora (Nazir et al.

2018). Since then, the definition of probiotic had evolved over time.

In a scientific sense, Metchnikoff (1907, as cited in George Kerry et al., 2018)

expressed probiotics as an alteration of floral or microbial diversity in the human body and

as a replacement useful against harmful microbes. In addition, Tissier (1906, as cited in

George Kerry et al., 2018) suggested the oral administration of live organisms

(bifidobacteria) to patients with diarrhea especially in infants to help restore a healthy gut

flora.

According to the latest report of the Food and Agriculture Organization (FAO) and

World Health Organization (WHO) as stated by Karimi et al. (2018), probiotics are live
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microorganisms whose adequate intake causes beneficial effects on health and several

studies have demonstrated their effects on prevention and treatment of many diseases.

Probiotics also have many health benefits for digestion, metabolism, innate

epithelial immunity, and even in exclusion of pathogenic microorganisms (Azad et al

2019). George Kerry et al. (2018), defined the variety of health-related properties of

probiotics namely anti-pathogenicity, anti-diabetic, anti-obesity, anti-inflammatory, anti-

cancer, anti-allergic, and angiogenic activities as wells as a significant effect on the brain

and central nervous system (CNS).

Furthermore, these also stimulate, modulate, and regulate the host's immune

response and can also control the release of gastrointestinal hormone via initiating the

activation of a specific genes of a localized host cells, and influence brain behavior through

neural signaling, as part of the gut-brain axis (George Kerry et al., 2018). Therefore, based

on the above-mentioned properties, probiotics would perhaps exhibit antimicrobial activity

which is an important aspect in the study.

The beneficial effects of viable probiotic bacteria as dietary supplements have

gained huge research interest (Prabhurajeshwar & Chandrakanth, 2019), and probiotic-

containing products have long been studied and appreciated for their positive effect on

gastrointestinal (GI) health (Sutula et al., 2013). The most common genera with probiotic

characteristics are the Lactobacillus spp. and L casei as the most commonly utilized

probiotic species (Aktas et al., 2016) which are now widely used to prepare fermented

dairy products such as yoghurts, milk-shakes and etc. (Prabhurajeshwar & Chandrakanth,

2019).
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However, bacterial growth can drastically be affected by pH, so in order to be

used as a probiotic, these microorganisms must adapt to the pH of the human gut which

varies from 1.5 to 4.5 depending on the type of foods consumed and digested

(Prabhurajeshwar & Chandrakanth, 2019).

Lactobacillus casei Shirota (LcS), a species in the genus Lactobacillus

encompassing most of the lactic acid bacteria in the body (Lactobacillus casei, 2020),

found in the probiotic-fermented milk drink Yakult at a reported concentration of

1.2 × 1010 cfu/100ml (Hu et al., 2019), has over 75 years’ history of safe consumption and

proven health benefits, backed by comprehensive clinical studies focused primarily on the

reduction and immune-modulating effects of functional and infectious gut diseases

(Macmillan Publishers Limited, part of Springer Nature, 2019).

Taking the daily probiotic products such as Yakult was associated with a lower rate

of clinical presentation with diverticulitis episodes and improvement in gastrointestinal

symptoms (Nichols et al., 2020). Conversely, probiotic therapy has also been introduced

for the maintenance of oral health and a study by Sutula et al., (2013, as cited in Hu et al.,

2019), revealed that four weeks of consumption of 6.5×109 viable LcS per day by healthy

denture wearers showed a transient colonization of the oral cavity and denture surfaces

by this strain during the consumption period and for up to 7 weeks of washout, posed no

significant effect on acidogenic populations such as levels of lactobacilli and streptococci.

In addition, Yakult intake changed the abundance of some bacteria related to

dental caries, suggesting that the change of composition may be beneficial to oral health,

while the overall microbiota structure remained unaffected (Hu et al., 2019).
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Antimicrobial activities of probiotics and L. casei

Antimicrobial behavior is known to be one of the most beneficial results of

probiotics, as disruption or alteration in the composition of the diverse gut microbiota

community is prevented, unlike conventional antibiotics (George Kerry et al., 2018).

Tejero-Sarinena et al. (2013, as cited in George Kerry et al., 2018) investigated

the influence of probiotics on the survival of Salmonella enterica, Serovar typhimurium

and Clostridium difficile in an in vitro model and claimed that probiotics inhibit pathogens

by the production of short-chain fatty acids (SCFAs), such as acetic, propionic, butyric and

lactic acids. Whereas, the most common bacteriocins include lacticin, lactocin, pediocin,

pisciolin, enterocin, reuterin, plantaricin, enterolysin and nisin (Fijan, 2016).

In the study conducted by Karimi et at. (2018) revealed that a study from Martyr

Chamran University of Ahvaz was carried out from 2013 to 2014 involving a total of thirteen

(13) probiotics colonies isolated from 20 samples of common dairy products and

vegetables to evaluate the antimicrobial effect of each against two E. coli pathotype using

disk diffusion method. It was pointed that five out of thirteen probiotic strains have

demonstrated growth inhibitory activity against Escherichia coli pathotypes specifically on

Escherichia coli O157:H7 strain.

Additionally, it has also been reported in the review study conducted by Azad et

al., (2018) where in homogenates prepared from several probiotics,

including Lactobacillus rhamnosus GG, Lactobacillus acidophilus, Lactobacillus

delbrueckii bulgaricus, Bifidobacterium lactis, and Streptococcus thermophiles, have the

ability to suppress the proliferation of mononuclear cells. Moreover, the same study

asserted that Bifidobacterium bifidum has a significant effect in enhancing antibody


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responses to ovalbumin, whereas B. breve has an increased humoral immune response

after stimulation with IgA (Azad et al., 2018).

Typically, according to Fijan (2016), probiotic strains usually develop more than

one antimicrobial agent that can function synergistically, expanding the scope of

microorganisms that are attacked. As long as this antimicrobial spectrum is limited to

pathogenic microorganisms, this property can be desirable, but it cannot be ruled out that

it would not affect the normal gut microbiota or other microbiotas as well.

Further, Fijan (2016) also suggested that probiotic properties are strain based and

that identification of strains is imperative. Hence, it should be remembered that the

beneficial effect of one probiotic preparation does not imply efficacy of other preparations

containing different bacterial strains, because each individual probiotic strain has its

unique biological properties.

Escherichia coli pathotype

Escherichia coli is a Gram-negative bacterium commonly found as a commensal

in the human microbiota. The plasticity of its genome, however, has contributed to the

evolution of this organism into pathogenic strains capable of causing human and animal

diseases and syndromes of public health significance (Rojas-Lopez et al., 2018).

Recently, unprecedented outbreaks of Escherichia coli O157:H7 infection have

occurred in Japan, Scotland and America, and in Europe and Australia with other

Enterohemorrhagic Escherichia coli (EHEC) serotypes (Karimi et al., 2018). Based on this
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evidence, further research into the application of new methods to prevent and regulate

these bacteria appears to be appropriate.

Based on the review study of Rojas-Lopez et al. (2018), pathogenic E. coli are

mainly divided into two groups depending on the disease location namely extraintestinal

pathogenic E. coli (ExPEC) and intestinal pathogenic E. coli (InPEC). ExPEC strains are

chiefly associated with neonatal meningitis (NMEC) and urinary tract infections (UPEC) in

adults, conversely, InPEC strains are usually related to diarrheal disease which are further

subdivided into at least 6 well-known pathotypes: enteropathogenic E. coli (EPEC),

enterohemorrhagic E. coli (EHEC), enteroinvasive E. coli (EIEC), enteroaggregative E.

coli (EAEC), diffusely adherent E. coli (DAEC) and enterotoxigenic E. coli (ETEC).

The Enterohemorrhagic Escherichia coli (EHEC) strains were discussed as

causative agents of hemorrhagic colitis and hemolytic uremic syndrome and the shiga-like

toxin of this strain has verotoxic effects. Additionally, there are over 700 antigenic types

(serotypes) producing shiga toxin and these serotypes are necessary to distinguish strains

that actually cause disease (Todar, 2020). However, the most common serotypes are

0157:H7 wherein the infective dose of this strain is low with up to 100 bacteria causing

disease (Karimi et al., 2018).

Pathogenic E. coli infection usually causes severe diarrhea (Yang et al., 2017) with

8–10% of cases in children (Karimi et al., 2018). Diarrhea is the result of the reversal of

the normal net absorptive status of water and electrolyte absorption to secretion.

Fortunately, diarrheal disease caused by pathogenic E. coli is preventable by improved

environmental sanitation and is treatable by antibiotics. The treatment of diarrheal disease

is generally effective with oral rehydration and maintaining electrolyte balance through the
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diet (Yang et al., 2017) and nowadays, probiotics are consumed to inhibit pathogens and

increase shelf life of foods as they release antimicrobial to compete with pathogens that

lead to an increase in the immune response of the host (Karimi et al., 2018).

Nevertheless, novel therapeutic methods are also required for the incidence of

antibiotic resistance, loss of normal intestinal flora and verotoxin caused by E. coli strains,

particularly as a result of taking antibiotics.

Staphylococcus aureus pathotype

Staphylococcus aureus is a gram-positive bacterium and one of the most common

causative agents of wide range infective diseases such as skin infections, bacteremia,

endocarditis, pneumonia and food poisoning (Enany et al., 2017).

It is a facultative anaerobe that belongs to the Staphylococcus genus within the

Staphylococcae family and is often classified in a routine microbiology laboratory as a

clinically significant bacterium. It appears as irregular tiny clusters of gram-positive cocci

and is cultivated for 18-24 hours in a blood agar plate. (Bagnoli et al., 2018).

Furthermore, S. aureus can exist commensally with humans as a colonizer but can

also exist as a pathogen. It is a major pathogen in bacteremia whether community

acquired or hospital acquired. It has proven its versatility by continuing to be an important

infectious pathogen that has contributed to increasing morbidity and mortality of patients

over the years (Youssef & Molony, 2017).

According to Enany et al. (2017), it was indicated that the process of S. aureus

infections involves five stages: (1) colonization, (2) local infection, (3) systemic
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dissemination and/or sepsis, (4) metastatic infections, (5) toxicosis. Consequently, this

microorganism is in carrier state in the anterior nares and may appear asymptomatic for

weeks or months and its colonization may proceed to infection once exposed to prolonged

hospitalization, immune suppression, surgeries, use of medical invasive medical devices

and chronic metabolic diseases.

Commonly, S. aureus when in contact with skin can cause skin abscess and can

further spread and result to localized infections such as carbuncle, cellulitis, and impetigo

bullosa or wound infection. They may also enter the blood and spread systematically to

different organs resulting to sepsis and their spread may result to endocarditis,

osteomyelitis, renal carbuncle, septic arthritis and epidural abscess (Enany et al., 2017).

Statistics showed that approximately 20-30% of human population carries

S.aureus and about 40-70% of associated nosocomial infections worldwide were caused

by Methicillin-Resisted Staphyloccocus aureus (MRSA) which was first reported in United

Kingdom after the introduction of methicillin to treat patients with penicillin-resistant

staphylococcus infection (Enany et al., 2017).

Drug resistance developed in human pathogenic bacteria is emerging and has

become a global problem. Due to this, there’s a difficulty in looking for the best drug that

could treat S. aureus infection. According to David and Daum (2017), the history of S.

aureus is characterized by the emergence of this resistance to each new class of

antimicrobial anti-staphylococcal drugs, including penicillin, sulfonamides, tetracyclines,

glycopeptides, and others, resulting in complications in treatment.

During 1960s, it was identified that S.aureus became resistant to Methicilin, β-

lactam antimicrobial active initially against a majority of S.aureus strains. Moreover, a


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particular mobile genetic element (MGE) called staphylococcal chromosome mec

(SCCmec) was responsible for this methicillin resistance in staphylococci, which brings

many virulence factors with it (Enany et al., 2017).

Additionally, it was also stated by Enany et al. that back in 1920s, Penicillin was

discovered as the first beta-lactam antibiotic to become an effective weapon against

S.aureus infections, but during 1940s, resistant to this drug also arise after its introduction

into clinics due to the production of plasmid-encode beta-lactamase enzyme

(penicillinase) which enzymatically cleaved the beta-lactam ring of penicillin rendering the

antibiotic inactive. Daptomycin, Linezolid, Ceftaroline, can be used as alternatives to

vancomycin for infections caused by methicillin-resistant Staphylococcus aureus (MRSA)

as suggested by Hemeg et al. (2019).

Despite the rapid advancement of modern medicine, S. aureus infections still

remain as highly prevalent in human populations as transmission can be of direct contact.

As these bacteria are growing around human environment, therefore it is important to be

aware of its pathogenesis as it is known to be commensal at the same time opportunistic

pathogen.

Synthesis

Despite the clear correlation between gastrointestinal diseases and factors such

as poor sanitation, insufficient access to clean drinking water, and other risk factors, as

well as the rapid advancement of modern medicine, pathogenic bacteria still continue to

evolve into much more resistant strain and will constantly remain as a risk to human
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gastrointestinal tract. Further understanding of the connection between antimicrobial uses,

bacterial status, and host reaction provides new insights and stimulates analysis into

emerging regimens of antimicrobial therapy that deliver improved clinical outcomes while

reducing resistance. Hence, there is a need to conduct studies that investigate properties

of bacteria and the possible treatment to their infection from natural resources to decrease

the gap in knowledge in treatment formulation and to reduce further harm.

This study will contribute into reaching this knowledge as this research aims to

determine the synergistic effect of the antimicrobial properties of Zingiber officinale

(Ginger), specifically its ethanolic extract, and Lactobacillus casei strain Shirota from

commercial probiotic product against pathogenic strains of Escherichia coli and

Staphylococcus aureus, guided by the principles stated in this review.


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Chapter 3

METHODOLOGY

Research design

The research design that will be employed in this study is the quasi-experimental

research design. This will involve manipulation of the test variables in the study,

observation and determination of the synergistic antimicrobial effect of ethanolic extracts

of ginger and Lactobacillus casei Shirota strain which are purposely selected as

experimental groups of this study. Determination of the minimum inhibitory concentration

ethanolic extracts will also be done. The antimicrobial activity of ginger ethanolic extracts,

Lactobacillus casei Shirota strain and their combination will be measured through the zone

of inhibition produced in cultures of Escherichia coli and Staphylococcus aureus using disk

diffusion method.

Social preparations and ethical considerations

Prior to the conduct of the study, the researchers must first obtain approval from

the Ethics Committee of the University of San Agustin to be given an ethical clearance

form indicating that the study is ethical and can be performed. Upon approval by the Ethics

Committee, the researchers will prepare a letter of permission which will be addressed to

the Mendel Research Laboratory of the University of San Agustin where the experiment

will be conducted. Upon approval by the Mendel Research Laboratory in-charge,


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researchers must then prepare the instruments that are needed in the course of the

experiment to be requested from the laboratory.

In the whole duration of the experiment, researchers must observe and adhere to

the proper handling of biochemical hazards and other hazards inside the laboratory. The

researchers must treat all microorganisms as potential pathogens and all materials that

will be used for culturing microorganisms should be sterilized properly to ensure the safety

of all equipment. Disinfecting the working areas before and after use is needed as well as

proper handwashing. All cultures, chemicals, disinfectant, and media as well as hazardous

substances should be clearly and securely labeled to avoid acquiring infections and any

injury during experimental work in the laboratory (Sarosh et al., 2015).

The researchers must also observe proper waste disposal during the course of the

experiment. All of the equipment and supplies used in experiments involving bacterial

cultures should be sterilized. This includes the tools used for transferring media or

bacteria, such as the inoculating instruments (loops and needles) and pipettes for liquid

transfer. Decontamination should be carried out by autoclaving at 121°C for 60 minutes.

After autoclaving, media may be disposed of through normal waste disposal or incineration

procedures.

Sampling design and sample size determination

Purposive non-probability sampling design is used in selecting the samples for the

study guided by the principles presented in the literature review. Ginger ethanolic extracts

and Lactobacillus casei Shirota strain are purposely chosen as the main samples and
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independent variables in the study and their antimicrobial effect will be measured by the

zone of inhibition produced on Escherichia coli and Staphylococcus aureus, purposely

selected as the test bacteria, using disk diffusion method. These samples will be most

useful in achieving the main objective of the study which is to determine the synergistic

antimicrobial effect of ginger ethanolic extracts and Lactobacillus casei Shirota strain

against Escherichia coli and Staphylococcus aureus.

Procedures/methods

Preparation of ginger ethanolic extracts

The preparation of ethanolic extracts from ginger will be based from the study of

Nguyen et al. (2019) with some modifications. Fresh ginger rhizome will be acquired from

the local market and 100g will be cut into smaller pieces and be utilized for extraction by

maceration. It will be soaked in 500ml 95% ethanol (Yadufashije et al., 2020) in a Becher

for 72 hours at room temperature. After 72 hours, the whole mixture will be filtered using

cheese cloth and secondary filtration will be done using Whatman No.1 to remove

residues. The filtrate that will be obtained will be concentrated at 50°C by rotary evaporator

and the dried extract will be dissolved in ethanol to a final concentration of 100mg/ml (Gull

et al., 2012). The solution will then be stored at 4°C in a refrigerator to be used for

subsequent procedures (Yassen & Esmaeel, 2016).

Minimum Inhibitory Concentration (MIC) of ginger ethanolic extracts


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Minimum inhibitory concentration of ginger ethanolic extract will be determined by

the method described by Rahman et al., 2020 with some modifications. The stock solution

of 100mg/ml of ginger extract will be used. It will be prepared by diluting 1g of the dried

extract in 10ml ethanol so 1ml of working solution contains 100mg of ethanolic ginger

extracts. This will be labeled as the Stock Solution-I. To prepare more diluted working

solution, 1:100 dilution will be done to the Stock Solution-I by adding 99 ml of ethanol. So,

1ml of the working solution will contain 1mg of ginger extract; this will be labeled as the

Stock Solution-II and will be used to observe minimum inhibitory concentration against E.

coli and S. aureus by making different working solutions of different concentrations (Table

1).

Sterile disks with a diameter of 5 mm will be dipped in different dilutions of ethanol

extracts of ginger for 1 hour and will be placed over MHA agar plates seeded with 107

CFU of each bacterial culture. Plates will then be incubated at 37°C for 24 hours. The

zone of inhibition in each case will be measured as diameter of the clearing zones and

results will be recorded.

Table 1: Composition and different concentrations of working solutions with

control

No. of Test Stock Solution-II Distilled Water Concentration of


(ml) (ml) Ethanolic Ginger
extract (μg/ml)

Test 1 9 ml 1 ml 900μg/ml

Test 2 8 ml 2 ml 800μg/ml

Test 3 7 ml 3 ml 700μg/ml

Test 4 6 ml 4 ml 600μg/ml
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Test 5 5 ml 5 ml 500μg/ml

Test 6 4 ml 6 ml 400μg/ml

Test 7 3 ml 7 ml 300μg/ml

Test 8 2 ml 8 ml 200μg/ml

Test 9 1 ml 9 ml 100μg/ml

Test 10 10 ml 0 ml 1000μg/ml

Test 11 - 10 ml -

Preparation of Lactobacillus casei Shirota strain cell-free supernatant (CFS)

Lactobacillus casei Shirota strain will be collected from a commercial probiotic

drink containing Lactobacillus casei Shirota strain and isolation will be based from the

study of Rafieian-Kopaei et al. (2017) with some modifications. 2ml of the commercial

probiotic drink will be transferred in a flask containing de Man, Rogosa & Sharpe (MRS)

Broth as enrichment media. 100 mL of distilled water will be added to the media and will

be incubated at 37°C for 24 hours. For identification and confirmation of the bacteria,

Gram-staining will be done and subsequent cultures will be performed.

Preparation of cell-free supernatant (CFS) will be based from the study of

Koohestani et al. (2018) with minor modifications. Fresh culture of the isolate will be

centrifuged at 8000 rpm for 15 minutes then CFS will be decanted aseptically and will be

sterilized using a 0.20 µm pore size filter. The CFS will be used freshly for the subsequent

assay. Antimicrobial effect of the isolate will be evaluated by disk diffusion test on MHA

medium plated with the test bacteria. Blank sterile disks (5mm in diameter) will be dipped

in 1000μL supernatant 1 hour before placing on separate MHA media inoculated with E.
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coli and S. aureus. The plates will then be incubated at 37°C for 24 hours and zone of

inhibition will be measured using a ruler.

Preparation of the test bacteria

The test bacteria which will be used in the study are Escherichia coli and

Staphylococcus aureus and they will be commercially acquired from a laboratory and 107

CFU will be evenly suspended in Mueller Hinton Agar (MHA) poured into the Petri dishes.

The bacteria will be incubated for 24 hours at 37°C to get the active strains and will serve

as inoculums for the subsequent studies (Foustine et al., 2019).

Antimicrobial assay (Disk Diffusion Method)

Antimicrobial activity of ginger ethanolic extract and Lactobacillus casei Shirota

strain will be assessed using disk diffusion method based on the study of Foustine et al.

(2019) and it will be performed under aseptic conditions. Sterile disks will be prepared

from Whatman filter paper no. 1 with a diameter of 5 mm and will be dipped into each

working solution of the samples 1 hour before testing. Different proportions of working

solutions will be prepared for each treatment. Treatments to be done are demonstrated in

Table 2.
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Table 2: Preparation of treatments

Treatment 100mg/ml of Lactobacillus


Ginger Ethanolic casei Shirota
Extract (ml) strain CFS (ml)
1 1 mL -

2 - 1 mL

3 1 mL 1 mL
(1:1 proportion)
4 2 mL 1 mL
(2:1 proportion)
5 1 mL 2 mL
(1:2 proportion)

Thereafter, the disks will be placed on top of the media that have been inoculated

with the test bacteria such as Escherichia coli and Staphylococcus aureus in a manner of

three trials with five replicates. All of the inoculated Petri dishes will be incubated for 24

hours at 37°C. After 24 hours, the media will be observed for the area of inhibition and

diameter of the area in millimeters will be measured using a ruler.

Data processing

Study findings will be explained in words, tables, and figures. Specifically, results

from testing minimum inhibitory concentration of ginger ethanolic extracts will be

processed in tabular from. Tabulation and graphical representations will be utilized in

presenting the findings that will be obtained from measuring the zone of inhibition

produced by the three trials in five replicates. To show if there will be significant difference

in the three trials performed in five replicates, tabulation will also be used to present the

findings that will be obtained.


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Data analysis

To address the first objective which is to measure the minimum inhibitory

concentration of ginger ethanolic extract, data will be analyzed by determining the highest

and lowest values of concentration to which visible growth is inhibited. To answer second

objective which is to measure the zone of inhibition produced by ginger ethanolic extracts,

Lactobacillus casei Shirota strain and their combinations on Escherichia coli and

Staphylococcus aureus, data will be analyzed by getting the mean and standard deviation

from the mean of the zone of inhibition in three trials performed which will be presented in

tabular and graphical forms. To answer the third objective which is to determine the

significant difference in the zones of inhibition produced by ginger ethanolic extracts,

Lactobacillus casei Shirota strain and their combination on Escherichia coli and

Staphylococcus aureus, means of the zone of inhibition produced in three trials with five

replicates will be analyzed using one-way analysis of variance (ANOVA) with 0.05 level of

significance.
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containing Lactobacillus casei strain Shirota on dental plaque microbiota. Journal of
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Kamrul I., Asma, A.R., Khan, M.M., & Kabir, M. (2014, June 2). Antimicrobial activity of
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Micropia.nl website: https://www.micropia.nl/en/discover/microbiology/lactobacillus-
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infection patients attended Muhoza Health Center. Asian Journal of Medical


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42
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APPENDIX A

DRAFT OF LETTER TO THE MENDEL RESEARCH LABORATORY IN-CHARGE

October 30, 2020

DR. DORALYN S. DALISAY


In-charge, Mendel Research Laboratories
University of San Agustin
General Luna St., Iloilo City

Dear Dr. Dalisay,

A warm Agustinian greetings!

We are the students from MLS 3H Group 2 of the College of Health and Allied Medical
Professions. We would like to ask permission from your office to allow us to work in Mendel
Research Laboratories of the University of San Agustin on______________ to perform
experimental study on the antimicrobial activity of ethanolic extracts and Lactobacillus
casei Shirota strain involving the incubation of the test bacteria such as Escherichia coli
and Staphylococcus aureus for our research entitled Synergistic Antimicrobial Effect
of Ginger (Zingiber officinale) Ethanolic Extracts and Probiotic (Lactobacillus casei)
Against Enteric Pathogenic Bacteria

We will take full responsibility and accountability for any damage that may occur to the
building, laboratory, and equipment during the conduct of our experiment. The University
of San Agustin and its personnel will not be held liable for any damage or loss of our
personal belongings, personal injury or death.
We are hoping for your generous approval.

Thank you and God Bless.

Respectfully yours,
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ROCHELLE DOMINIQUE CASADOR MAYZ CERCADO

MA. ANGELICA DEL CASTILLO ANA LIZA R. BESAS

ARMELINE CASTILLO JAMES DOMINIC DITALO

EUNA GRACE N. CHAVEZ

Conforme:
Research Adviser: ZESIL GAY E. GELLE, RMT, MSMT
Email address: zgelle@usa.edu.ph

JOSE G. PEREZ, JR., RMT, MSMT


Academic Supervisor, MLS Program

SOFIA COSETTE P. MONTEBLANCO, RN, MAN


Dean, CHAMP
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APPENDIX B
Schematic Diagram of Research Procedures

Preparation of Ginger Ethanolic Extracts

Obtain 100g Ginger Soak the ginger rhizome


rhizome and slice by 500 mL 95% Ethanol
into small pieces. for 72 hours at room
temperature.

Filter the mixture with


Dissolve the dried extract in
cheese cloth and refilter
ethanol to a final
using Whatman no.1.
concentration of 100mg/ml
then store at 4°C
Concentrate the filtrate to
dryness at 50°C using
rotary evaporator to obtain
pure extract

Minimum inhibitory concentration (MIC) of ginger ethanolic extracts

A. Preparation of stock solution

Dissolve 1 g of dried ginger


ethanolic extract in 10ml
ethanol to yield a
concentration of 100mg/ml

Label this solution as


Stock Solution-I

Add 99 ml Ethanol to Stock


Solution-I to make 1:100
dilution then label as Stock
Solution-II
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B. Preparation of different working solutions with different concentrations

Prepare 10 ml of different concentration of ginger ethanolic extract using distilled

water.

No. of Test Stock Solution-II Distilled Water Concentration of


(ml) (ml) Ethanolic Ginger
extract (μg/ml)

Test 1 9 ml 1 ml 900μg/ml

Test 2 8 ml 2 ml 800μg/ml

Test 3 7 ml 3 ml 700μg/ml

Test 4 6 ml 4 ml 600μg/ml

Test 5 5 ml 5 ml 500μg/ml

Test 6 4 ml 6 ml 400μg/ml

Test 7 3 ml 7 ml 300μg/ml

Test 8 2 ml 8 ml 200μg/ml

Test 9 1 ml 9 ml 100μg/ml

Test 10 10 ml 0 ml 1000μg/ml

Test 11 - 10 ml
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C. Determining minimum inhibitory concentration

Dip 2 sterile disks to each Remove the sterile


Prepare sterile
working solution of ginger disks from each
disks with
ethanolic extracts solution by a forcep;
diameter of 5mm
prepared in different place on a sterile petri
concentration for 1 hour. dish and allow to dry.

While waiting for the


Place the remaining disks to dry, prepare plate
sterile disk from Place one of the two
sterile disks from each media inoculated with E.
each solution to coli and S. aureus. Label
MHA agar plate solution to MHA agar
plate inoculated with and section the plates
inoculated with according to the
Staphylococcus Escherichia coli
concentration of each
aureus working solution.

Place blank disk as control Measure the zone of inhibition


to each plate. Place the produced and identify the
plates in an incubator for minimum inhibitory
24 hours at 37°C concentration from each
bacterial plate.

Preparation of Lactobacillus casei Shirota strain cell-free supernatant


A. Enrichment of the bacteria

Transfer 2ml of Yakult in


a flask with MRS broth

Add 100 ml of distilled


water in the flask

Incubate the MRS broth


for 24 hours at 37°C
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B. Gram staining

Perform smear Gently shake the MRS Using the inoculating


preparation using broth tube containing loop, fish out a
aseptic method. Lactobacillus casei loopful of specimen
Shirota strain avoiding to touch the
side from the tube

Heat fix the smear Leave smears in the Apply evenly the
by passing it Biosafety Cabinet for smear at the center
through the flame 3 a few minutes and of the slide in a
times. allow to air dry. circular motion from
inner to outer.

Flood the smear with Add 3-8 drops of Add 3-8 drops of
crystal violet for 30 sodium bicarbonate sodium bicarbonate
seconds and let it stand for and let it stand for
5-10 seconds 5-10 seconds

Gently flood the


Once dry counterstain Decolorize smear smear with Gram’s
the smear using 1:1 ethanol-acetone iodine and let it
Safranin and wash drop by drop until stand for 5-10
gently with tap water. only a blue tinge seconds. Drain
Allow to dry then appears excess Gram’s
examine under OIO. iodine
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C. Preparation of CFS and antimicrobial assay

Centrifuge fresh culture of Decant supernatant


the isolate at 8000 rpm for aseptically and sterilized
15 minutes using 0.20 µm pore size filter

After 1 hour, remove the Prepare 1000μL supernatant


disk using a forcep and and dip 5mm blank sterile
allow to dry in a petri dish. disks on the supernatant for
1 hour.

Place the disks over MHA Incubate the plates for 24


media inoculated with E. coli hours at 37°C and measure
and S. aureus. the zone of inhibition using a
ruler

Antimicrobial assay (disk diffusion method)


A. Preparation of treatment

Treatment 100mg/ml of Lactobacillus


Ginger Ethanolic casei Shirota
Extract (ml) strain CFS (ml)
1 1 mL -

2 - 1 mL

3 1 mL 1 mL
(1:1 proportion)
4 2 mL 1 mL
(2:1 proportion)
5 1 mL 2 mL
(1:2 proportion)
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B. Disk diffusion method

Prepare sterile disks from


Whatman filter paper no. 1
with 5mm diameter

Dip sterile disks into each


treatment prepared 1 hour
before testing and allow to
dry.

Place the disks on top of


each MHA media
inoculated with E. coli and
S. aureus

Incubate the inoculated


petri dishes for 24 hours at
37°C.

After incubation, measure


the zone of inhibition
produced.
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TIMETABLE OF RESEARCH PROPOSAL


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BUDGETARY REQUIREMENTS

BUDGET
DETAILS AMOUNT

I. PERSONAL SERVICES
A. Honoraria
1. Panel Members (Proposal & Final Php 3,000.00
Defense) Php 2,000.00
2. Statistician

SUBTOTAL Php 5,000.00

II. MAINTENANCE AND OPERATING


EXPENSES
A. Materials and Laboratory Supplies Php 11,000.00
B. Office Supplies and Printing Php 1,000.00
SUBTOTAL Php 12, 000.00
III. CONTINGENCY Php 3,000.00

TOTAL Php 20, 000.00


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DUMMY TABLES

Table 3. Minimum Inhibitory Concentration

No. of Stock Distilled Concentration of Zone of Inhibition


Test Solution-II Water (ml) Ethanolic Ginger (mm)
(ml) extract (μg/ml) E. coli S. aureus

Test 1 9 ml 1 ml 900μg/ml
Test 2 8 ml 2 ml 800μg/ml
Test 3 7 ml 3 ml 700μg/ml
Test 4 6 ml 4 ml 600μg/ml
Test 5 5 ml 5 ml 500μg/ml
Test 6 4 ml 6 ml 400μg/ml
Test 7 3 ml 7 ml 300μg/ml
Test 8 2 ml 8 ml 200μg/ml
Test 9 1 ml 9 ml 100μg/ml
Test 10 10 ml 0 ml 1000μg/ml
Test 11 - 10 ml -

Table 4. Zone of inhibition produced on Escherichia coli

ZONE OF INHIBITION (mm)

Escherichia coli Ethanolic Lactobacillus casei 1:1 1:2 2:1


extracts Shirota strain proportion proportion proportion
TRIAL 1

TRIAL 2

TRIAL 3

MEAN
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Table 5. Zone of inhibition produced on Staphylococcus aureus

ZONE OF INHIBITION (mm)

Staphylococcus Ethanolic Lactobacillus casei 1:1 1:2 2:1


aureus extracts Shirota strain proportion proportion proportion
TRIAL 1

TRIAL 2

TRIAL 3

MEAN

Table 6. Mean of the Zone of inhibition produced in three trials


MEAN OF THE ZONE OF INHIBITION (mm)

Test Bacteria Ethanolic Lactobacillus casei 1:1 1:2 2:1


extracts Shirota strain proportion proportion proportion
Escherichia coli

Staphylococcus aureus

Mean

Grand Mean

Table 7. Analysis of Variance

Source of Variance SS df MS Interpretation


Between Trials

Within Trials

Total

F Critical

P Value
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CURRICULUM VITAE

NAME: ANA LIZA BESAS

ADDRESS: BRGY. SAN FERNANDO, SAN JOSE, ANTIQUE

CONTACT NUMBER: 09365425946

E-MAIL ADDRESS: albesas@usa.edu.ph

MOTHER’S NAME: MARILYN BESAS

FATHER’S NAME: ARTHUR BESAS

EDUCATIONAL BACKGROUND:

PRIMARY: ST. ANTHONY’S COLLEGE GRADE SCHOOL

SECONDARY: ST. ANTHONY’S COLLEGE HIGH SCHOOL

TERTIARY: UNIVERSITY OF SAN AGUSTIN


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CURRICULUM VITAE

NAME: ROCHELLE DOMINIQUE T. CASADOR

ADDRESS: BRGY. NEW ISABELA, TACURONG CITY,

SULTAN KUDARAT

CONTACT NUMBER: 09089615908

E-MAIL ADDRESS: rdcasador@usa.edu.ph

MOTHER’S NAME: ROCELIA JUDITH T. CASADOR

FATHER’S NAME: ROGER T. CASADOR

EDUCATIONAL BACKGROUND:

PRIMARY: NEW ISABELA CENTRAL ELEMENTARY SCHOOL

SECONDARY: NOTRE DAME-SIENA COLLEGE OF TACURONG

TERTIARY: UNIVERSITY OF SAN AGUSTIN


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CURRICULUM VITAE

NAME: ARMELINE A. CASTILLO

ADDRESS: BRGY. CABAYOGAN BADIANGAN, ILOILO CITY

CONTACT NUMBER: 09959510594

E-MAIL ADDRESS: Arcastillo@usa.edu.ph

MOTHER’S NAME: JENELYN CASTILLO

FATHER’S NAME: ARTURO CASTILLO

EDUCATIONAL BACKGROUND:

PRIMARY: ST. JULIAN ACADEMY

SECONDARY: ST. JULIAN ACADEMY

TERTIARY: UNIVERSITY OF SAN AGUSTIN


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CURRICULUM VITAE

NAME: MAYZ P. CERCADO

ADDRESS: DISTRICT IV, FORNIER ST. SIBALOM, ANTIQUE

CONTACT NUMBER: 09610651257

E-MAIL ADDRESS: mpcercado@usa.edu.ph

MOTHER’S NAME: MONICA MAY CERCADO

FATHER’S NAME: VICENTE CERCADO

EDUCATIONAL BACKGROUND:

PRIMARY: ANTIQUE SPED CENTER

SECONDARY: ANTIQUE NATIONAL SCHOOL

TERTIARY: UNIVERSITY OF SAN AGUSTIN


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CURRICULUM VITAE

NAME: EUNA GRACE N. CHAVEZ

ADDRESS: BRGY, SOOC AREVALO PROJECT 3 ILOILO CITY

CONTACT NUMBER: 09568118213

E-MAIL ADDRESS: egchavez@usa.edu.ph

MOTHER'S NAME: FAITH CHAVEZ

FATHER'S NAME: LEOVIN CHAVEZ

EDUCATIONAL BACKGROUND:

PRIMARY: MANDURRIAO ELEMENTARY SCHOOL

SECONDARY: ILOILO CITY NATIONAL HIGH SCHOOL

TERTIARY: UNIVERSITY OF SAN AGUSTIN


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CURRICULUM VITAE

NAME: MA. ANGELICA A. DEL CASTILLO


ADDRESS: LOT 1, BLOCK 21, PHASE 4

GRAN PLAINS SUBDIVISION, JARO, ILOILO CITY


CONTACT NUMBER: 09208886170

E-MAIL ADDRESS: mdelcastillo@usa.edu.ph

MOTHER’S NAME: THELMA A. DEL CASTILLO


FATHER’S NAME: ROBERTO P. DEL CASTILLO

EDUCATIONAL BACKGROUND:

PRIMARY: ILOILO SACRED HEART SCHOOL, INC.


SECONDARY: ST. PAUL’S UNIVERSITY ILOILO
TERTIARY: UNIVERSITY OF SAN AGUSTIN
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CURRICULUM VITAE

NAME: JAMES DOMINIC S DITALO

ADDRESS: ILAYA BUGASONG ANTIQUE

CONTACT NUMBER: 09064456683

E-MAIL ADDRESS: jdboyditalo07@gmail.com

MOTHER’S NAME: ROSELYN SUAREZ DITALO

FATHER’S NAME: DOMINGO SUNGCAYAWON DITALO

EDUCATIONAL BACKGROUND:

PRIMARY: SAINT JOSEPH ACADEMY

SECONDARY: CENTRAL PHILIPPINES UNIVERSITY

TERTIARY: UNIVERSITY OF SAN AGUSTIN

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