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Flooding Soil Seed Bank
Flooding Soil Seed Bank
SU M M A R Y
1. This paper explores soil seed bank composition and its contribution to the vegetation
dynamics of a hydrologically variable desert floodplain in central Australia: the Cooper
Creek floodplain. We investigated patterns in soil seed bank composition both temporally,
in response to flooding (and drying), and spatially, with relation to flood frequency.
Correlations between extant vegetation and soil seed bank composition are explored with
respect to flooding.
2. A large and diverse germinable soil seed bank was detected comprising predominantly
annual monocot and annual forb species. Soil seed bank composition did not change
significantly in response to a major flood event but some spatial patterns were detected
along a broad flood frequency gradient. Soil seed bank samples from frequently flooded
sites had higher total germinable seed abundance and a greater abundance of annual
monocots than less frequently flooded sites. In contrast, germinable seeds of perennial
species belonging to the Poaceae family were most abundant in soil seed bank samples
from rarely flooded sites.
3. Similarity between the composition of the soil seed bank and extant vegetation increased
following flooding and was greatest in more frequently flooded areas of the floodplain,
reflecting the establishment of annual species. The results indicate that persistent soil seed
banks enable vegetation in this arid floodplain to respond to unpredictable patterns of
flooding and drying.
er
riv Longreach
n
so
m
Tho
Currareva gauging er
station o riv
r co
Ba
Windorah
South Australia
Cooper Creek
Queensland
Lake
Eyre
0 100 200 km
Fig. 1 The Cooper Creek catchment. Inset shows location in central Australia. Latitude and longitude for Windorah are )25.4228S and
142.6564E respectively.
three occasions, February, May and October, during the likelihood of detecting species with patchy seed
the year 2000. A major flood event, comparable in size distributions (Bigwood & Inouye, 1988; Blanch &
to the April 1990 event, inundated all sites between Brock, 1994; Brock, Theodore & O’Donnell, 1994). A
the first and second sampling dates and a period of list of species occurring in the extant vegetation
drought preceded the third sampling date (Fig. 3). It within each 50 m2 quadrat was also compiled on each
is also worth noting that conditions prior to the sampling occasion. Soil samples were then transpor-
commencement of the survey were relatively moist, ted to Griffith University and dried and stored at
particularly in the near-channel zone, as both rainfall room temperature until germination trials com-
and a small flood event had occurred in late 1999. menced.
At each survey time, five soil cores of 0.055 m Soil seed bank composition was examined using the
diameter and 10 cm depth were collected from each seedling emergence method. Unlike manual sifting
site and aggregated in a single plastic bag to form a and counting of seeds, this method does not allow for
sample. Individual soil cores were collected from a complete assessment of seed abundance (Hutchings
random locations within the 50 m2 quadrat to increase & Russell, 1989). However, total seed count methods
2005 Blackwell Publishing Ltd, Freshwater Biology, 51, 206–223
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210 S.J. Capon and M.A. Brock
25 1998). In this case, the seedling emergence method
was considered appropriate for determining the
20
Discharge (mL × 106)
1961
1964
1967
1970
1973
1976
1979
1982
1985
1988
trays were then randomly arranged on tables in a
glasshouse at Griffith University. A pilot study indi-
Fig. 2 Annual discharge of Cooper Creek between 1958 and cated that fewer species germinated under flooded
1988 recorded at Currareva gauging stating near Windorah (see
conditions than moist, so a single watering treatment
Fig. 1). As this gauging station was closed following this period,
no more recent discharge data is available. (Data obtained from was selected where trays were kept moist by means of
the Queensland Department of Natural Resources). an automatic watering system operating four times
daily. Species which require complete submergence
for germination could be missed under a moist
(a) 160
watering treatment; however, these were not observed
in the pilot study which examined germination from
Rainfall (mm)
120
the soil seed bank under a range of watering
80
treatments including submergence for up to 3 months
40 duration. ter Heerdt, Schutter & Bakker (1999) and
Boedeltje, ter Heerdt & Bakker (2002) support this use
0
of a single watering treatment determined through
(b) pilot studies when experiments are constrained by
6 time and space. Trays were rotated at regular intervals
Discharge (mL × 106)
5
to ensure an even distribution of watering and were
4
kept in the glasshouse for 1 year to allow exposure to
3
a wide range of temperatures. Germination trials for
2
samples from the first and second sample times
1
commenced in August 2000, following completion of
0
O D F A J A O D
the pilot study, and those from the third survey in late
October 2000. Temperatures in the glasshouse over
1999 2000
this period ranged between 20 and 45 C during
summer and 10 and 35 C in the winter months. As
Fig. 3 (a) Total monthly rainfall (mm) at Windorah (source:
seedlings germinated from the trays, they were
Bureau of Meteorology) and (b) total monthly discharge (mil-
lions of ML) at Longreach from October 1999 to December 2000 recorded and removed once their identification was
(source: Queensland Department of Natural Resources). Arrows possible.
indicate sampling times. The Currareva gauging station (see
Fig. 1) was closed in 1988, hence the flow data from upstream on
the Thomson River are the best available for the study period. Data analysis
Discharge in the Cooper Creek is determined principally by
precipitation associated with northern monsoons and local Seedling count data for the four trays from each
rainfall rarely results in floodplain inundation. Rainfall is pre- sample were pooled to give an abundance value for
sented here to illustrate the period of local drought between the
each species at each site for each survey time. Species
second and third sampling dates rather than to demonstrate any
relationship with discharge. richness was considered to be the total number of
species occurring within these pooled samples and
are time consuming, have the potential to overlook total abundance was calculated by summing all
species with very small seeds and provide no species abundances from each pooled sample. Species
information on seed viability (Baskin & Baskin, were also assigned to groups on the basis of life form
2005 Blackwell Publishing Ltd, Freshwater Biology, 51, 206–223
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Soil seed banks of an arid floodplain 211
(i.e. shrubs, sub-shrubs, forbs and monocots) and life (Belbin, 1995). Principal axis rotation and correlation
span (i.e. annual or perennial) using descriptions and Monte-Carlo randomisation procedures were also
contained in Cunningham et al. (1992), resulting in a conducted to determine species vectors correlating
total of seven plant groups; shrubs, annual sub- significantly with the ordination space.
shrubs, perennial sub-shrubs, annual forbs, perennial Comparison of soil seed bank and extant vegetation
forbs, annual monocots and perennial monocots. The composition were initially made by means of a further
use of plant functional groups defined on the basis of SSH ordination based on a matrix of species presence
how plants germinate, establish and reproduce in and absence data. Additionally, Sorenson’s SI were
relation to surface water (i.e. submerged, amphibious calculated for each site and survey time using the
and terrestrial) has provided a fruitful approach for formula SI ¼ 2c/a + b, where c was the number of
considering the spatial and temporal dynamics of species common between the soil seed bank and
temporary wetland plant communities (Brock & extant vegetation and a and b were the total numbers
Casanova, 1997). However, the autecological informa- of species in the soil seed bank and extant vegetation
tion necessary to assign many species to such respectively (Sorenson, 1948). Similarity indices were
previously defined functional groups is lacking for converted into percentages by multiplying by 100 and
many plants of the Cooper Creek floodplain. There- effects of flood frequency zone and sample time on
fore, following Higgins, Rogers & Kemper (1997), similarity indices were examined using two-way
groups based on life form and life span were used ANOVA.
under the assumption that plants within such groups
are likely to utilise resources and respond to stressors
in a comparable manner. This approach has also been Results
successfully employed in a previous study of spatial
Soil seed bank composition
patterns in Cooper Creek floodplain vegetation
(Capon, 2005). The abundance of seeds belonging to Over the duration of the germination trials, a total of
each of these groups was then calculated for each 5483 seedlings germinated from the soil seed bank
sample. This was also done at the family level within samples with 2011, 2064 and 1408 germinating from
each of these major groups. samples from the first, second and third sample times
Abundance values were transformed, [log10(x + 1)], respectively. Of these, 56 species from at least 22
to meet the requirements of analysis of variance families were present (four forb species and one
(A N O V A ) (Zar, 1999). Untransformed species richness annual grass species could not be identified) (Appen-
and transformed abundance variables were then dix). Annual monocots were the most abundant group
analysed by two-way A N O V A to determine the effects and represented over half of the total seedlings
of sample time (February, May or October) and flood recorded. Annual forbs were the next most abundant
frequency zone (near-channel, mid-floodplain and far- group (35%), followed by perennial monocots (11%)
floodplain). Significantly different means were deter- and perennial forbs (4%). No shrub or sub-shrub
mined using Tukey’s b-test. Univariate analyses were seedlings germinated during the trials. At the family
all conducted in SPSS (SPSS, 2001). level, seedlings belonging to the Poaceae family in the
Further exploration of temporal and spatial patterns annual monocot group were the most abundant and
in soil seed bank composition was achieved by the annual grass, Eragrostis tenellula, was the most
performing a semi-strong hybrid (SSH) ordination common species, germinating in samples from all
on the untransformed species abundance data using flood frequency zones and sample times (Table 1).
Bray–Curtis dissimilarity measures. These multivari- Asteraceae seedlings in the annual forb group, e.g.
ate analyses were performed in PATN (Belbin, 1995). Calotis hispidula, Centipeda minima and Pseudognapha-
Three dimensions were used for the ordination and lium luteoalbum, were the second most abundant
default options were selected throughout. The ‘good- family germinating during the trials. The annual
ness of fit’ of SSH ordinations can be assessed via a monocot Cyperus difformis and the perennial monocot
stress value computed by PATN in conjunction with a Cyperus bifax, both belonging to the Cyperaceae
solution. Stress for the ordinations presented here family, were also frequently recorded from most
were below the recommended upper value of 0.2 samples as were the annual forbs Ammania multiflora
2005 Blackwell Publishing Ltd, Freshwater Biology, 51, 206–223
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212 S.J. Capon and M.A. Brock
Table 1 Common species germinating from soil seed bank samples in each flood frequency zone at each sample time
Species NC MF FF NC MF FF NC MF FF
Alternanthera nodiflora d d d d
Ammania multiflora d d d d d d d
Arabidella eremingena d
Aristida contorta d d d d d d
Calotis hispidula d d d d d
Centaurium spicatum d d d
Centipeda minima d d d
Chloris pectinata d d
Cullen cinereum d d d
Cyperus bifax d d d d d d d d d
Cyperus difformis d d d d d d
Daucus glochidiatus d d d d d d
Echinochloa turneriana d
Eragrostis tenellula d d d d d d d d d
Eriochloa crebra d
Haloragis aspera
Iseilema sp. d
Mimulus gracilis d d d d d d d d
Panicum decompositum d d
Phyllanthus virgatus d
Plantago cunninghamii d
Pseudognaphalium luteoalbum d d d d
Spergularia rubra d
Trigonella suavissima d
Wahlenbergia gracilis d d d
Symbols indicate that species was amongst the 10 most abundant germinating from these samples (families for each species are listed
in the Appendix).
NC, near-channel zone; MF, mid-floodplain zone; FF, far-floodplain zone.
Species richness
Time 2 0.034 0.966
Flood frequency zone 2 0.114 0.893 a a a
Time · flood frequency zone 4 0.233 0.917
Total seed abundance
Time 2 0.930 0.407
Flood frequency zone 2 4.108 0.028 a b ab
Time · flood frequency zone 4 1.519 0.225
Annual forbs
Time 2 1.189 0.320
Flood frequency zone 2 2.450 0.105 a a a
Time · flood frequency zone 4 2.269 0.088
Annual monocots
Time 2 1.044 0.366
Flood frequency zone 2 5.518 0.010 a b b
Time · flood frequency zone 4 0.599 0.667
Perennial forbs
Time 2 1.519 0.237
Flood frequency zone 2 0.815 0.453 a a a
Time · flood frequency zone 4 0.485 0.746
Perennial monocots
Time 2 2.565 0.095
Flood frequency zone 2 6.296 0.006 a b b
Time · flood frequency zone 4 0.0.75 0.989
that of extant vegetation samples (Fig. 8). The com- third sample time after drying. At all times, simi-
position of extant plant communities shifted substan- larity between the soil seed bank and extant veget-
tially following flooding and subsequent drying, as ation tended to be higher in samples from the
illustrated by the trajectories of samples within the near-channel zone and lowest in those from the far-
ordination space. Extant vegetation composition floodplain zone.
appeared to become more similar to that of the soil
seed bank over this time which is particularly appar-
ent in the position within the ordination space of Discussion
extant vegetation samples from the mid-floodplain
Soil seed bank composition
and far-floodplain zones at the third sample time
(Fig. 8). The similarity of soil seed bank samples and The results indicate that the Cooper Creek floodplain
their corresponding extant plant communities, as has a large and diverse soil seed bank composed
indicated by Sorenson’s similarity index, was signifi- predominantly of seeds belonging to annual monocot
cantly influenced by both sample time (F2,27 ¼ 10.046, and forb species. The dominance of graminoid species
P ¼ 0.001) and flood history zone (F2,27 ¼ 4.182, P ¼ observed here is typical of soil seed banks in tempor-
0.026) (Fig. 9). Although significant interaction be- ary wetlands as is the absence of woody species (Leck,
tween these factors was found (F2,27 ¼ 2.960, P ¼ 1989; LaDeau & Ellison, 1999; Rossell & Wells, 1999).
0.038), similarity clearly increased following flooding It is possible that viable seeds of some species not
in samples from all flood frequency zones and, in observed as seedlings during this study were present
the far-floodplain samples, increased again at the in the soil seed bank but their germination require-
200
Perennial forbs
composition
150 Perennial monocots
The major flood event during this study had little
100 effect on the composition of the germinable soil seed
50 bank despite evidence in the extant vegetation of
extensive germination following inundation (Capon,
0
2003). Annual species belonging to the Fabaceae
(b) 250 family were the sole group for which a significant
decline in seed abundance was observed directly after
Seed abundance ± SE
200
flooding and, following the subsequent drying period,
150 seed numbers amongst these species had returned to
100 their previous levels. Wetland plants often have fast
50
growth rates and rapid life cycles, especially in
response to flooding (Blom & Voesenek, 1996).
0
Consequently, local replenishment of the soil seed
(c) 250 bank may have occurred in other species prior to the
second sample time. Further additions to the soil seed
Seed abundance ± SE
200
bank before this sample time are likely to have
150 resulted from widespread seed dispersal by flood-
100 waters. The lack of temporal change in response to
flooding may also reflect the low proportion of seeds
50
expected to germinate in a single germination event
0 (Brock & Rogers, 1998; Brock, 1998; Leck & Brock,
Feb May Oct
2000; Haukos & Smith, 2001).
Sample time
However, some differences in soil seed bank com-
Fig. 5 Mean seed abundance in major plant groups for each position were apparent between the second and third
sample time in (a) near-channel zone sites, (b) mid-floodplain sample times, following the period of drying. These
zone sites and (c) far-floodplain zone sites. Error bars indicate
included a decline in the abundance of annual forbs
standard error.
and monocots germinating from near-channel zone
samples, although propagules of these groups were
ments were not met under glasshouse conditions. probably present in higher numbers in samples from
However, due to the long incubation period of the earlier survey times as a result of germination and
sediments through a range of temperatures and the seed production following the small flood which
total absence of shrub or sub-shrub seedlings in the occurred prior to the survey period. It is likely that the
germination trials, it seems unlikely that species in subsequent reduction occurred as a result of scouring
these groups could rely on persistent soil seed banks which could be expected to be greater in this zone.
for recruitment in the Cooper Creek floodplain. Perennial grasses and annual forbs belonging to the
Conversely, the persistence of many short-lived Portulacaceae family also increased in abundance in
annual monocot and forb species in this unpredictable samples from the third sample time from all flood
environment is probably facilitated largely by abun- frequency zones. Such increases may have resulted
dant soil seed banks. The actual size of the viable soil from wind dispersal during the intervening period
seed bank is likely to have been underestimated by and could reflect the timing of seed fall amongst adult
the seedling emergence method employed here as, in plants in these species. However, the absence of
many wetland plants, only a fraction of viable seeds germinable perennial grass seeds in samples from the
germinate in response to any one germination event near-channel and mid-floodplain zones during the
leaving substantial stores of seed from year to year first and second sample times suggests that soil seed
despite depletion by germination (Brock, 1998; Brock banks in these species may be transient rather than
& Rogers, 1998; Leck & Brock, 2000). long lived and persistent (Thompson & Grime, 1979).
2005 Blackwell Publishing Ltd, Freshwater Biology, 51, 206–223
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216 S.J. Capon and M.A. Brock
Table 3 Summary of two-way A N O V A s
Homogeneous investigating effects of sample time and
subsets for flood
flood frequency zone on seed abundance
frequency zone†
of forb and monocot families. Only those
Source d.f.* F P NC MF FF forb families where a significant effect
(P < 0.05) was found are shown.
Annual forbs
Amaranthaceae
Time 2 0.156 0.857
Flood frequency zone 2 14.218 <0.001 b a c
Time · flood frequency zone 4 0.501 0.735
Asteraceae
Time 2 6.632 0.005
Flood frequency zone 2 1.397 0.265 a a a
Time · flood frequency zone 4 1.467 0.240
Campanulaceae
Time 2 2.493 0.102
Flood frequency zone 2 31.069 <0.001 a b b
Time · flood frequency zone 4 1.280 0.302
Caryophyllaceae
Time 2 0.771 0.473
Flood frequency zone 2 5.565 0.009 a b b
Time · flood frequency zone 4 0.320 0.862
Fabaceae
Time 2 7.005 0.004
Flood frequency zone 2 14.596 <0.001 a b b
Time · flood frequency zone 4 0.829 0.518
Lythraceae
Time 2 1.463 0.249
Flood frequency zone 2 5.439 0.010 a ab b
Time · flood frequency zone 4 1.546 0.217
Portulacaceae
Time 2 4.821 0.016
Flood frequency zone 2 0.916 0.412 a a a
Time · flood frequency zone 4 1.141 0.358
Perennial forbs
Haloragaceae
Time 2 1.632 2.14
Flood frequency zone 2 4.710 0.018 ab b b
Time · flood frequency zone 4 2.078 0.111
Annual monocots
Cyperaceae
Time 2 0.951 0.399
Flood frequency zone 2 11.527 <0.001 a b b
Time · flood frequency zone 4 0.492 0.742
Poaceae
Time 2 0.355 0.704
Flood frequency zone 2 12.721 <0.001 a b b
Time · flood frequency zone 4 0.744 0.571
Perennial monocots
Cyperaceae
Time 2 1.627 0.215
Flood frequency zone 2 8.666 <0.001 a b b
Time · flood frequency zone 4 0.261 0.834
Poaceae
Time 2 14.231 <0.001
Flood frequency zone 2 1.385 0.268 a a a
Time · flood frequency zone 4 0.174 0.950
(a) (b)
60 60 Near channel
Seed abundance
Mid floodplain
40 40 Far floodplain
± SE 20 20
0 0
(c) (d)
60 60
Seed abundance
40 40
± SE
20 20
0 0
(e) (f)
Seed abundance
200 200
± SE
100 100
0 0
(g) (h)
200
Seed abundance
200
± SE
100 100
0 0
Feb May Oct Feb May Oct
Sample time
Fig. 6 Mean seed abundance in samples from each flood frequency zone and sample time for annual forb families: (a) Amaranthaceae,
(b) Asteraceae, (c) Fabaceae and (d) Lythraceae; annual monocot families; (e) Cyperaceae and (f) Poaceae; and perennial monocot
families; (g) Cyperaceae and (h) Poaceae. Error bars indicate standard error. Data for the annual forb families Campanulaceae,
Caryophyllaceae and Portulacaceae and the perennial forb family Haloragaceae have been omitted from this figure due to small
sample sizes.
Finally, the significant reduction of seeds belonging to dominate the extant vegetation (Capon, 2003, 2005).
the Asteraceae family in samples from the third Annual grasses which are able to complete their life
sample time was probably due to germination as cycles rapidly in periods intervening flood events are
many of these species are known to germinate in generally most common in more frequently flooded
response to winter temperatures (Cunningham et al., areas of floodplains (Menges, 1986; Capon, 2003, 2005)
1992). and this was reflected by their high seed abundance in
Although flooding did not alter soil seed bank the soil seed bank of the near-channel zone. Soil seed
composition substantially during the sample period, bank samples from the near-channel zone also had
some spatial differentiation was evident with relation significantly higher total seed abundance and greater
to flood frequency. This can be attributed partially to abundance of several annual forb families than those
variations in the extant vegetation which have devel- from the less frequently flooded areas. It is likely that
oped as a result of differences in flood frequency and more frequent and prolonged inundation in this zone
duration. Perennial grasses, for example, were most leads to more reproductively successful germination
abundant in the soil seed bank of the far-floodplain events, providing greater local additions to the soil
zone where flooding is rare and these species tend to seed bank. More frequent additions of seeds dis-
2005 Blackwell Publishing Ltd, Freshwater Biology, 51, 206–223
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218 S.J. Capon and M.A. Brock
(a) (b)
Axis 2
Axis 1 Axis 1
Fig. 7 Ordination of sites by seed abundance of species and species vectors significantly correlating with the ordination space. (a) SSH
ordination (stress ¼ 0.157). Symbol shape indicates flood frequency zone; ¼ near-channel, d ¼ mid-floodplain and ¼ far-
floodplain. Shading signifies sample time; black ¼ February, grey ¼ May and open symbols ¼ October. (b) Species vectors. Species
indicated by each number are provided in Table 4.
ID Species Plant
(Fig. 7b) name group Family
Appendix List of species recorded from the soil seed bank of the Cooper Creek floodplain