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State of the Art REVIEW

Cancer of unknown primary

BMJ: first published as 10.1136/bmj.m4050 on 7 December 2020. Downloaded from http://www.bmj.com/ on 8 December 2020 by guest. Protected by copyright.
Michael S Lee,1 Hanna K Sanoff2
A BST RAC T

1
Cancers of unknown primary (CUPs) are histologically confirmed, metastatic
Department of Gastrointestinal
Medical Oncology, University malignancies with a primary tumor site that is unidentifiable on the basis of standard
of Texas MD Anderson Cancer
Center, Houston, TX, USA
evaluation and imaging studies. CUP comprises 2-5% of all diagnosed cancers
2
Division of Hematology/ worldwide and is characterized by early and aggressive metastasis. Current standard
Oncology, Department of
Medicine, University of North evaluation of CUP requires histopathologic evaluation and identification of favorable
Carolina at Chapel Hill, Chapel
Hill, NC, USA
risk subtypes that can be more definitively treated or have superior outcomes.
Correspondence to: M S Lee Current standard treatment of the unfavorable risk subtype requires assessment of
mslee2@mdanderson.org
Cite this as: BMJ 2020;371:m4050
prognosis and consideration of empiric chemotherapy. The use of molecular tissue
http://dx.doi.org/10.1136/bmj.m4050 of origin tests to identify the likely primary tumor site has been extensively studied,
Series explanation: State of the
Art Reviews are commissioned
and here we review the rationale and the evidence for and against the use of such
on the basis of their relevance tests in the assessment of CUPs. The expanding use of next generation sequencing
to academics and specialists
in the US and internationally. in advanced cancers offers the potential to identify a subgroup of patients who have
For this reason they are written
predominantly by US authors. actionable genomic aberrations and may allow for further personalization of therapy.

Introduction range of 6-16 per 100 000 person years.7-9 Studies


Cancers of unknown primary (CUPs) are defined as of national cancer registries show a peak in
histologically confirmed, metastatic malignancies incidence of CUP about 1980 in the US and in the
with a primary tumor site that cannot be identified 1990s in Europe and Australia, with subsequent
on standard baseline evaluation.1 These cancers declines in age adjusted incidence rates,4 10-12
are typically characterized by aggressive and early which may reflect both better diagnostic imaging
metastasis and unpredictable patterns of spread.2 CUP and evolution of standard pathologic assessments
is not a single disease; rather, it is a heterogeneous such as immunohistochemistry, as well as true
grouping comprising diverse primary tumor types declines in incidence rates. However, registry
that elude identification with standard evaluation. A based studies of incidence and prevalence are
systematic review of 884 patients with CUP reported hampered by inadequate specificity in recording
in 12 autopsy cohort studies conducted between 1944 diagnoses, and more detailed auditing may result
and 2000 reported that a primary tumor site could in reclassification of up to 32% of cases of CUP to
be identified by autopsy in 644 (73%) patients, with an alternative primary tumor.8 In the US, a higher
the most common sites being lung (27%), pancreas proportion of CUP is found in patients who are
(24%), hepatobiliary (8%), kidneys (8%), bowel (7%), older, female, or black or reside in less affluent
genitourinary (7%), and stomach (6%).3 The inability or less educated counties.10 These data, however,
to identify such primary sites before death presents a cannot fully distinguish whether this reflects
diagnostic and therapeutic dilemma for patients and a distinct biology of CUP in these communities
their physicians. Tissue of origin tests that identify or a disparity in the extent of the diagnostic
primary tumor type on the basis of transcriptomic investigation.
analysis with good sensitivity and specificity have
been studied and commercialized. However, despite Sources and selection criteria
the divergence of chemotherapy and molecularly We searched PubMed and Medline for articles
targeted therapy in most solid tumors, whether written in English in 2005-19, using search terms
identification of the primary tumor site and receipt of “occult primary”, “cancer of unknown primary”,
site directed treatment improves patients’ outcomes and “cancer of unknown origin”. We selected
in a meaningful way remains, surprisingly, unclear. articles for inclusion on the basis of study quality
Here, we will review the management of CUP and the and design, prioritizing randomized controlled
data on the utility and accuracy of tissue of origin tests trials and prospective and retrospective studies of
and additional next generation sequencing assays in sufficient size. Given the ongoing pace of clinical
the evaluation of CUP. research, including recent reports of important
randomized clinical trials, we have also included
Incidence and prevalence additional sources relevant to this review such as
CUPs are estimated to comprise 2-5% of all meeting abstracts describing final results of relevant
diagnosed cancers worldwide,4-6 with an incidence randomized clinical trials.

the bmj | BMJ 2020;371:m4050 | doi: 10.1136/bmj.m4050 1


State of the Art REVIEW

Presentation and initial evaluation of CUP PET-CT in 433 CUP patients from 11 studies found

BMJ: first published as 10.1136/bmj.m4050 on 7 December 2020. Downloaded from http://www.bmj.com/ on 8 December 2020 by guest. Protected by copyright.
Because of the heterogeneity of CUP, patients can a primary tumor detection rate of 37%, with 84%
present with any number of signs and symptoms that (78% to 88%) sensitivity and 84% (78% to 89%)
are related to the site of malignant involvement. In the specificity.21 A more recent meta-analysis including
absence of a radiographically detected, or clinically 1942 patients in 20 studies found a primary tumor
suspected, primary site, a biopsy should be taken detection rate of 40.9% (39.0% to 42.9%).22
from the site that can most safely undergo at least However, prospective clinical trials comparing
core needle biopsy to ensure that adequate tissue is PET-CT with conventional imaging modalities such
available for histopathologic, and possibly molecular as conventional computed tomography scans are
and genetic, analyses. Immunohistochemical stains lacking. In a prospective study of 136 patients
are routinely used to attempt to identify the most newly diagnosed as having CUP with extra-cervical
likely primary site and are done in a tiered fashion metastases, patients underwent PET-CT along with
to seek to identify the broad type of malignancy administration of intravenous and oral contrast
(carcinoma, melanoma, lymphoma, or sarcoma) to facilitate interpretation of diagnostic computed
and then identify the subtype and primary site.13-15 tomography images. Imaging results were correlated
In most cases of CUP, histopathology is sufficient to with a standard of reference established by a
determine epithelial source but cannot further define multidisciplinary team to determine the most likely
a primary tumor site or histology. About half of primary tumor site. PET-CT determined the primary
cases of CUP have pathologic findings of metastatic tumor site in 38/135 (28%), whereas conventional
adenocarcinoma, 30% have undifferentiated or computed tomography determined the primary tumor
poorly differentiated carcinoma, and 15% have site in 43/135 (32%); no significant differences in
squamous cell carcinoma. Approximately 5% of sensitivity, specificity, or accuracy were seen.23 Given
CUPs cannot be classified beyond undifferentiated the lack of prospective trial data showing the clinical
neoplasm, a grouping that comprises a mixture of benefit of PET-CTs compared with conventional
neuroendocrine carcinomas, lymphomas, germ computed tomography imaging, guidelines do not
cell tumors, melanomas, sarcomas, and embryonal recommend PET-CT scans as standard.
malignancies.16 Notably, identifying patients with germ cell tumors
If the site of origin remains uncertain after routine and lymphomas or other hematologic malignancies,
histopathologic analyses, further evaluation should which have potential for curative therapy, is of para­
follow the consensus guidelines developed by leading mount importance. NCCN guidelines also prioritize
cancer agencies. Figure 1 summarizes subsequent identification of thyroid carcinomas, neuroendocrine
management. The National Comprehensive Cancer tumors, and sarcomas, which have markedly different
Network (NCCN), the European Society of Medical treatment options and prognoses.
Oncology (ESMO), and the National Institute for
Health and Care Excellence (NICE) recommend a Identification and management of favorable and
basic evaluation in all patients, as described in box unfavorable risk groups of CUP
1, with additional investigation considered given Favorable risk groups
details of clinical presentation.17-19 For example, Distinct subsets exist within the heterogeneous
upper endoscopy may be useful in selected patients grouping of CUP, and their recognition is important
with suspicious signs, symptoms, or laboratory as their treatment differs considerably from that
abnormalities suggestive of an upper gastrointestinal of undifferentiated CUP. These more favorable risk
primary. subsets encompass approximately 10-20% of cases
Positron emission tomography (PET) scans are not of CUP and are distinguished on the basis of clinical
routinely recommended in evaluation of CUPs in the and pathologic features that provide ample evidence
NCCN, ESMO, or NICE guidelines. Select scenarios to suggest the site of origin even if it is not actually
exist, however, in which PET should be considered. detected,18 24 as described in table 1.
Specifically, the ESMO and NICE guidelines highlight Isolated localized lymph node metastases to
the potential utility of PET scans in patients with the neck or to the axilla in a woman are important
isolated squamous cell carcinoma in cervical subsets of CUP, and patients treated using loco­
lymph nodes. A meta-analysis of 246 patients with regional paradigms of head and neck cancer or
biopsy confirmed carcinoma of cervical nodes breast cancer, respectively, have the opportunity for
with occult primary included in seven studies of 18 potentially curative therapy. A systematic review of
F-fluorodeoxyglucose PET-computed tomography 24 retrospective studies found that 321/446 (72%)
(PET-CT) for detection of primary tumor site showed women with isolated axillary nodal metastases, even
a primary tumor detection rate of 44% (95% if no breast primary is found on initial evaluation,
confidence interval 31% to 58%), with excellent are ultimately found to have an occult breast primary
sensitivity of 97% (63% to 99%) but specificity of when treated definitively with surgical resection.25
only 68% (49% to 83%).20 In other CUPs, PET-CTs Given this high rate of primary tumor detection,
may also be informative of primary tumor site. these patients should receive therapy with curative
However, the overall rate of primary detection with intent as indicated for stage II breast cancer.
PET scans has been shown be quite low for patients Similarly, identifying diseases that would have
with CUP in other anatomic sites. A meta-analysis of a better prognosis if disease specific therapy is

2 doi: 10.1136/bmj.m4050 | BMJ 2020;371:m4050 | the bmj


State of the Art REVIEW

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BMJ: first published as 10.1136/bmj.m4050 on 7 December 2020. Downloaded from http://www.bmj.com/ on 8 December 2020 by guest. Protected by copyright.
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Fig 1 | Summary of recommended evaluation for cancer of unknown primary (CUP). ECOG PS=Eastern Cooperative Oncology Group performance
status; LDH=lactate dehydrogenase

administered is important. For example, in a


retrospective study of 42 patients with CUP who
were deemed to have a colorectal primary, of whom
Box 1: Recommended management of cancer of unknown primary17-19
32 received first line or second line therapy with a
Initial evaluation for essentially all patients colorectal cancer specific regimen, median survival
• Thorough medical history, particularly regarding past biopsies or malignancies, among patients receiving a colorectal site specific
removed lesions, and spontaneously regressing lesions regimen was 27 months. The retrospective nature
• Complete physical examination, including head and neck, skin, lymph node, rectal, of the study makes it subject to reporting bias, but
genitourinary, pelvic, and breast examination these data may suggest favorable prognosis in this
• Laboratory studies including complete blood count, electrolytes, liver function tests, subgroup with identifiable colorectal cancer.26
creatinine, calcium, lactate dehydrogenase, and urinalysis Identifying a site of origin would allow for
• Computed tomography scans of thorax, abdomen, and pelvis, with intravenous administration of optimal evidence based, disease
contrast unless contraindicated specific treatments to patients, so it is reasonable
• Mammography for female patients* to assume that many patients would have impro­
• Serum prostate specific antigen for men over aged ≥40, especially with ved outcomes if a site specific regimen can be
adenocarcinoma bone metastases* administered. However, this has not been definitively
• Fecal occult blood test demonstrated for CUP more broadly.
• Biopsy (optimally core needle biopsy) of most accessible site
Additional recommended investigations in specific clinical scenarios Unfavorable risk groups
Following evaluation, most patients (80-90%) do not
Isolated cervical lymph nodes
fit any of the favorable risk subgroups as outlined
• Head and neck computed tomography. Consider PET-CT (to identify primary head
in table 1 and thus comprise an unfavorable subset
and neck site)
of disease, with poor prognosis. A retrospective
Supraclavicular/axillary lymph nodes in women, or other histopathologic evidence for analysis of 49 patients with unfavorable subset CUP
breast cancer and liver metastases showed a median survival of
• Breast magnetic resonance imaging and/or ultrasonography, if mammogram 10 (95% confidence interval 7 to 13) months, and
unremarkable a systematic review of four additional published
Mediastinum series in similar cohorts showed a range of median
• β-hCG and α-fetoprotein (to evaluate germ cell tumor) survival from 1.7 to 7.2 months.27 Patient prognosis
Retroperitoneal mass must be incorporated into any decisions made on
• β-hCG, α-fetoprotein, testicular ultrasonography if male <65 years use of chemotherapy and choice of chemotherapy.
hCG=human chorionic gonadotropin; PET-CT=positron emission tomography-computed tomography
A prognostic model, developed from 150 unselected
*National Institute for Health and Care Excellence guidelines specifically do not recommend these tests unless patients with CUP and then validated with an
compatible clinical and/or pathologic features are presents external dataset of 116 patients, established poor

the bmj | BMJ 2020;371:m4050 | doi: 10.1136/bmj.m4050 3


State of the Art REVIEW

Table 1 | Favorable risk subtypes of cancer of unknown primary (CUP)

BMJ: first published as 10.1136/bmj.m4050 on 7 December 2020. Downloaded from http://www.bmj.com/ on 8 December 2020 by guest. Protected by copyright.
CUP subtype/characteristics Potential treatment Analogous tumor type
Poorly differentiated neuroendocrine Platinum-etoposide chemotherapy Poorly differentiated neuroendocrine
carcinoma of unknown primary carcinoma
Well differentiated neuroendocrine tumor Somatostatin analogs, everolimus, sunitinib, peptide receptor Well differentiated neuroendocrine tumor
of unknown primary radiotherapy
Peritoneal adenocarcinomatosis of serous papillary Optimal surgical debulking, followed by platinum-taxane Stage III ovarian cancer, primary peritoneal
histology in females chemotherapy cancer
Isolated axillary nodal metastases in females Axillary nodal dissection, mastectomy or breast radiation therapy, Stage II breast cancer
and adjuvant therapy per ER/PR and HER2 status
Squamous cell carcinoma involving cervical lymph nodes Neck dissection and/or radiation therapy of bilateral neck and Head and neck squamous cell cancer
head-neck axis
Squamous cell carcinoma involving inguinal lymph nodes Inguinal lymph node dissection and/or radiation therapy Urogenital squamous cell carcinoma
with unknown primary
Poorly differentiated carcinoma involving mediastinum or Testicular or germ cell platinum based chemotherapy regimen Extragonadal germ cell tumor
retroperitoneum in young males, especially with elevated
β-hCG or α-fetoprotein
CUP with colorectal IHC (CK20+, CDX2+, CK7–) Colorectal cancer based systemic treatment Metastatic colorectal cancer
Single metastatic lesion of unknown primary Resection and/or radiation therapy +/− systemic therapy Oligometastatic disease
Blastic bone metastases with IHC/serum Androgen deprivation therapy +/− radiation therapy Prostate cancer
PSA expression in males
ER=estrogen receptor; hCG=human chorionic gonadotropin; HER2=human epidermal growth factor receptor 2; IHC=immunohistochemistry; PR=progesterone receptor; PSA=prostate specific
antigen.

performance status (Eastern Cooperative Oncology analyzing how a given tumor’s genetic and molecular
Group performance status (ECOG PS) 2-3) and profile compares with the common patterns seen in
elevated serum lactate dehydrogenase concentration cancers with known sites of origin. For example, the
as key independent prognostic variables. A poor risk Cancer Genome Atlas has characterized genomic and
group was defined as having poor performance or gene expression variations within multiple tumor
elevated lactate dehydrogenase, with 11% one year types and is studying differences and similarities
survival and 3.9 months median survival (compared across cancer types in the Pan-Cancer Atlas.30 In
with 45% one year survival and 11.7 months an updated analysis, 11 286 tumor samples from
median survival in the good prognostic group).28 33 cancer types were assayed for aneuploidy, DNA
ESMO guidelines recommend consideration of two methylation, mRNA, and microRNA profiles. Among
drug chemotherapy combinations for patients with 10 165 tumors analyzed by mRNA expression profiles,
ECOG PS 0-1 and normal lactate dehydrogenase, 25 groupings were identified, with tumor type
and weighing chemotherapy versus best supportive being a primary driving factor for these groupings.
care for patients with ECOG PS 2 or greater, elevated Additionally, tumors with similar histology, such as
lactate dehydrogenase, or both.18 squamous morphology inclusive of cervical, head and
For patients with unfavorable subset CUP with neck, and lung primaries, clustered together. Clusters
adequate performance status, the mainstay of were also identified on the basis of similar tissue or
treatment is empiric chemotherapy. Multiple chemo­ organ system of origin, including neuroendocrine
therapy regimens have been tested in phase II studies, and glioma, melanomas of skin and eye, clear cell
but no single regimen has shown superiority. A meta- and papillary renal carcinomas, hepatocellular and
analysis of 543 patients with unfavorable subset CUP cholangiocarcinomas, a gastrointestinal group of
treated with a total of 16 regimens in 10 randomized colorectal and stomach adenocarcinomas, and a
controlled trials found that no single regimen had digestive system group of pancreatic and stomach
a significant benefit compared with any others, adenocarcinomas.31 Thus, molecular features such
with wide confidence intervals. The chemotherapy as gene expression or microRNA profiles differ
regimens in these studies included platinum agents, among tumor tissue types and may be used to
taxanes, vinca alkaloids, fluoropyrimidines, and determine the primary tumor tissue type. Several
irinotecan.29 Thus, various suggested or preferred platforms have been developed and commercialized
chemotherapy regimens for patients with unfavorable to apply a classifier to identify the tissue of origin in
subset CUP are listed in NCCN and ESMO guidelines CUP samples. Although several studies to validate
and are summarized in table 2. the sensitivity and specificity of these assays have
been performed, as will be described in the following
Tissue of origin tests sections, no clear gold standard exists to determine
The molecular underpinnings of diverse types of the true tissue of origin, so these limitations should
human cancers are increasingly understood, as be considered in analyzing these results.
genomic, transcriptomic, and epigenetic analyses of
a range of common and rare tumor types are ongoing. 92 gene real time polymerase chain reaction based
These studies show that distinct tumor types have assay
recognizable differences in gene expression and other Accuracy
molecular features, suggesting that the site of origin A 92 gene set (CancerTYPE ID, Biotheranostics,
of CUP might be elucidated from a tumor sample by San Diego, CA, USA) was initially developed using

4 doi: 10.1136/bmj.m4050 | BMJ 2020;371:m4050 | the bmj


State of the Art REVIEW

Table 2 | Recommended treatment regimens for cancer of unknown primary (CUP)

BMJ: first published as 10.1136/bmj.m4050 on 7 December 2020. Downloaded from http://www.bmj.com/ on 8 December 2020 by guest. Protected by copyright.
Suggested chemotherapy regimens ESMO guidelines NCCN guidelines
Cisplatin-gemcitabine Yes Yes (adenocarcinoma, preferred); yes (squamous cell carcinoma)
Cisplatin-etoposide Yes
Paclitaxel-carboplatin Yes Yes (adenocarcinoma, preferred); yes (squamous cell carcinoma, preferred)
Docetaxel-carboplatin Yes Yes (adenocarcinoma); yes (squamous cell carcinoma)
Irinotecan-oxaliplatin Yes -
Capecitabine-oxaliplatin Yes Yes (adenocarcinoma, preferred)
Gemcitabine-irinotecan Yes Yes (adenocarcinoma, if ineligible to receive platinum based chemotherapy)
Fluorouracil-oxaliplatin - Yes (adenocarcinoma, preferred); yes (squamous cell carcinoma, preferred)
Fluorouracil-irinotecan - Yes (adenocarcinoma, preferred)
Paclitaxel-cisplatin - Yes (squamous cell carcinoma)
Cisplatin-fluorouracil - Yes (squamous cell carcinoma)
Gemcitabine-docetaxel - Yes (adenocarcinoma)
Docetaxel-cisplatin - Yes (adenocarcinoma); yes (squamous cell carcinoma)
Irinotecan-carboplatin - Yes (adenocarcinoma)
Capecitabine - Yes (adenocarcinoma); yes (squamous cell carcinoma)
Fluorouracil - Yes (adenocarcinoma); yes (squamous cell carcinoma)
Paclitaxel, carboplatin, etoposide - Yes (adenocarcinoma: only with ECOG PS 0-1)
Fluorouracil, irinotecan, oxaliplatin - Yes (adenocarcinoma, if presumed gastrointestinal primary site)
Docetaxel, cisplatin, fluorouracil - Yes (squamous cell carcinoma: only with ECOG PS 0-1)
ECOG PS=Eastern Cooperative Oncology Group performance status; ESMO=European Society of Medical Oncology; NCCN=National Comprehensive Cancer
Network.

a training set of 578 tumors representing 39 tumor care. Of these 38 patients with a “gold standard” for
classes, including a range of epithelial and non- the primary site, 28 had sufficient tissue to perform
epithelial tumor types. This gene set included 87 the 92 gene real time polymerase chain reaction (RT-
genes differentially expressed in the distinct tumor PCR) assay, and 20/28 had sufficient RNA quality
types and five reference genes expressed at a relatively and quantity for the 92 gene classifier to predict a
invariable level across disease types. The genes site of origin. The assay result was correct in 15/20
selected were enriched in DNA binding transcription (75%) of cases, was incorrect in 3/20 (15%), and was
factors and in cell surface receptor proteins. This unclassifiable in 2/20 (10%). By comparison, clinical
panel resulted in 87% classification accuracy in features and immunohistochemistry suggested a
a validation cohort.32 A subsequent expansion of primary site in six cases, five of which were correct,
the training set to 2206 specimens representing 30 and suggested two or more primary sites in 13 cases,
tumor types and 54 histological subtypes was used eight of which included the correct primary site.35
to enhance the classifier. Comparing a sample of Although the number of cases was very limited, this
unknown origin against the gene expression profiles study provided early evidence that a more definitive
for the reference tumors of each subtype within the primary tumor site could be identified using the
database provides a probability that the unknown 92 gene classifier compared with standard clinical
sample is classified as a known tumor type. In an assessment.
internal validation study, this classifier resulted in A subsequent study built on this experience by
85% sensitivity for tumor type and 87% sensitivity pooling these 20 patients with an additional 151
for histological subtype.33 In a separate test set of patients with CUP prospectively studied using the 92
187 formalin fixed, paraffin embedded (FFPE) tumor gene classifier. Of the 171 patients, 144 successfully
samples, the 92 gene assay had an 83% sensitivity had a single tumor type determined using the 92 gene
for tumor type.33 A validation study performed in classifier. The most common tumor sites determined
three independent laboratories used the assay on included colorectal in 26/171 (15%), non-small
790 FFPE tumor samples encompassing more than cell lung in 18/171 (11%), breast in 15/171 (9%),
50 subtypes and found overall sensitivity of 87% hepatocellular in 10/171 (6%), ovary in 9/171 (5%),
(84% to 89%) and specificity ranging from 98% and pancreas in 9/171 (5%). As an update to the
to over 99% for tumor types. For tumor subtyping previous test, 18/24 (75%) patients who eventually
analysis, sensitivity was 82% (79% to 85%), with had a latent primary tumor identified had the tumor
specific ranging from 98% to over 99%. No significant type correctly identified by the 92 gene classifier.
decrease in performance was seen on the basis of Additionally, of 52 patients who had a likely primary
metastatic tumors, histological grade, or cases with tumor site identified by immunohistochemistry,
limited tissue.34 the 92 gene panel was concordant in 40 (77%).36
Multiple retrospective studies of the 92 gene set Thus, these studies show that compared with a gold
classifier have been performed to determine the standard method of identifying a primary tumor, the
sensitivity of the assay and correlate results to clinical 92 gene classifier is accurate in 75-77% of cases.
actionability. A retrospective, multicenter analysis The accuracy of the 92 gene classifier was compared
was performed on 501 patients deemed to have CUP, against standard immunohistochemical pathology
of whom 38 were subsequently found to have a latent assessment in a prospectively defined, blinded study
primary site that became manifest during routine of 131 high grade, predominantly metastatic tumors

the bmj | BMJ 2020;371:m4050 | doi: 10.1136/bmj.m4050 5


State of the Art REVIEW

with known reference diagnoses, 122 of which were as measured by the composite primary outcome

BMJ: first published as 10.1136/bmj.m4050 on 7 December 2020. Downloaded from http://www.bmj.com/ on 8 December 2020 by guest. Protected by copyright.
evaluable. FFPE slides were provided to blinded of changes in the patient’s treatment, narrowing
pathologists to perform immunohistochemistry and of treatment options, or elimination of a treatment
also used to determine cancer type by the 92 gene option based on the results of the 92 gene assay.
classifier. The 92 gene assay had an accuracy of 79% The primary outcome was assessed through a survey
(96/122; 95% confidence interval 71% to 85%) completed by ordering medical oncologists (n=73)
for tumor type, compared with an accuracy of 69% and attending pathologists (n=34). In the study, 444
(84/122; 60% to 76%) for immunohistochemistry. patients were enrolled from February 2013 through
The P value for difference in sensitivity was 0.019.37 October 2014, and 397 (89%) had sufficient RNA for
analysis. Of these, 379 (95%) had tumor type and
Clinical utility histological subtype determined by the 92 gene assay.
The clinical utility of the 92 gene classifier has been Among 271 assay results from medical oncologists,
evaluated in a few prospective studies. A multicenter, the 92 gene assay either confirmed or narrowed the
prospective phase II trial enrolled patients with CUP diagnosis in a significant proportion of patients but
and sufficient tissue for testing with the 92 gene often provided a result that was not initially suspected.
assay. Patients waited two to three weeks before In 79/271 (29%) cases, a single site was clinically
starting therapy, pending results of the 92 gene assay, suspected, and this site was confirmed in 60% of
at which time they were assigned to receive protocol cases, but a previously unsuspected site was indicated
prescribed treatment based on the predicted tissue by the assay in 39% of cases. In 80/271 (30%) cases,
of origin. The regimens included were standard for two or more sites were suspected in the differential
the era of enrollment from October 2008 through diagnosis, and the assay narrowed the diagnosis in
December 2011, although therapy for many of these 66% of cases and provided a previously unsuspected
diseases has since evolved.38 site in 27% of cases. In the remainder of the 112 cases
The primary objective of the study was to assess that the oncologist reported were CUP without an a
the efficacy of classifier guided therapy for patients priori suspected primary site, the assay provided a
with CUP, as measured by the overall survival tumor type prediction in 97% of cases. Only 203 of
compared with historical controls. In total, 289 the patients included in this study went on to receive
patients were enrolled, of whom 252 (87%) had therapy, and among these patients the oncologists
the assay successfully performed. Of the patients reported that the 92 gene assay changed the planned
who had the assay successfully performed, 247/252 treatment regimen in 47% of cases,39 suggesting a
(98%) had a tissue of origin predicted; the most considerable effect of testing on patient care.
common sites predicted were biliary tract in 52/252
(21%), urothelium in 31 (12%), colorectum in 28 Microarray based tissue of origin test
(11%), non-small cell lung in 27 (11%), pancreas The Tissue of Origin Test (Cancer Genetics) uses gene
in 12 (5%), and breast in 12 (5%), with other sites expression profiling via microarrays to determine the
having less than 5% each. Of the 252 patients, 223 similarity of a tumor sample’s gene expression profile
(87%) received treatment in the study, of whom 194 to 15 known tumor types. This test uses a 1550 gene
(87%) or 67% of the enrolled population received expression profile obtained from microarrays and
assay directed therapy. The median overall survival reports a similarity score, ranging from 0 to 100, for
for these 194 patients was 12.5 (95% confidence each of the 15 potential tissue types. The assay was
interval 9.1 to 15.4) months. The median survival trained using 2039 human tumor samples from 15
was 13.4 months in patients with tumor types tissues of origin.40 The analytic performance of this
deemed to have higher rates of response to treatment assay was studied at four independent laboratories
(colorectal, breast, ovary, kidney, prostate, bladder, that each performed the assay on 60 frozen tissue
non-small cell lung, germ cell, poorly differentiated specimens from metastatic and primary tumors and
neuroendocrine, lymphoma, and small cell lung), found high reproducibility, with overall concordance
compared with 7.6 months for those with tumor types of 89.4% (range 87.0-92.5%).41 A subsequent blinded
with lower rates of response (biliary tract, pancreas, validation study processed 547 frozen tumor samples
gastroesophageal, liver, sarcoma, cervix, carcinoid, at four laboratories, with 258 (47%) samples derived
endometrium, mesothelioma, melanoma, skin, from metastatic tissue and the remainder from poorly
thyroid, head and neck, and adrenal) (P=0.04).38 differentiated or undifferentiated primary tumor
This was thought to reflect improved outcomes tissue. The overall agreement with the reference
compared with median survival of less than 10 diagnosis was 87.8% (480/547; 95% confidence
months in historical controls receiving empiric interval 84.7% to 90.4%), with a sensitivity of 87.8%
therapy for CUP. Of course, systemic therapy options (84.7% to 90.4%) and a specificity of 99.4% (98.3%
for distinct disease types have evolved markedly to 99.9%).40 A subsequent retrospective study of
since that era, in particular with the evolution of 21 fresh frozen CUP samples found that 16 (76%)
predictive biomarkers for targeted therapies and now samples resulted in a positive result in a single tissue,
immune checkpoint inhibitors, so outcomes in the with an indeterminate result in five (24%). This study
current landscape of disease need to be studied. was limited by lack of a gold standard given that the
A more recent prospective multicenter observational CUP samples by definition did not have a known
trial was performed to determine clinical impact, primary tumor type.42

6 doi: 10.1136/bmj.m4050 | BMJ 2020;371:m4050 | the bmj


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Subsequently, validation studies for this assay most samples were identified as lung, pancreas, or

BMJ: first published as 10.1136/bmj.m4050 on 7 December 2020. Downloaded from http://www.bmj.com/ on 8 December 2020 by guest. Protected by copyright.
were done using FFPE specimens. Microarray colon.54 However, categorizing only six tumor types
data for 462 metastatic, poorly differentiated, would not be sufficient to successfully identify
or undifferentiated FFPE tissues that all had a primary tumor type in the current era, especially as
reference diagnosis were obtained, and an 88.5% fairly commonly misidentified tumor types such as
(85.3% to 91.3%) concordance was found. The biliary and gastroesophageal were not included in
reproducibility was established in three independent the panel.
laboratories, with 89.3% (133/149) concordance.43
A blinded, multicenter, prospective study sought to Prospective randomized clinical trials using tissue
compare the accuracy of immunohistochemistry and of origin testing
pathologists’ interpretation of tumor tissues against The first prospective randomized study reported was
the microarray assay. FFPE metastatic tumor samples performed at multiple sites in Japan and randomized
from 160 cases with known reference were prepared patients with CUP 1:1 to receive empiric carboplatin-
and sent to blinded pathologists for standard paclitaxel or site specific therapy on the basis of
immunohistochemical analysis and for microarray the results of tissue of origin testing.55 However,
analysis. The microarray result was concordant the molecular classifier used was not one of the
with the reference diagnosis in 89.2% of samples, commercialized, previously validated classifiers
compared with 83.3% per immunohistochemical that is available for current use. The molecular assay
assessment (odds ratio 2.9, 1.2 to 6.7). In 51 required a fresh frozen tumor specimen, from which
poorly differentiated and undifferentiated tumors, RNA was extracted, and an Affymetric microarray
the accuracy of the microarray assay was 94.1%, was run. Training data were developed using 1024
compared with immunohistochemical accuracy of tumors of known origin obtained either from publicly
79.1% (P=0.016), although results were similar in well available Gene Expression Omnibus datasets or
and moderately differentiated tumors (microarray from the Department of Genome Biology at Kindai
accuracy 85.3% versus immunohistochemical University, and a tenth of the data was randomly set
accuracy 86.8%; P=0.52).44 aside for use as a validation cohort to determine the
proportion of true classifications. This procedure was
Summary of investigational assays repeated 10 times, resulting in an average 78.6%
Various additional assays have been studied to cross validated estimate of accuracy. However,
identify tissue of origin for CUPs,45 46 and these are this microarray classifier has not been validated
summarized in table 3. These additional assays are on additional datasets. In the trial, 130 patients
not currently commercially available, but they show were randomized, with gene expression profiling
the potential of tissue of origin testing. These include successfully performed for all of them. Twenty nine
a microRNA based assay, initially developed using patients did not proceed to study treatment, 19 of
quantitative RT-PCR,47-49 and subsequently refined whom had a primary site subsequently identified,
using a custom designed microarray identifying 42 leaving 101 patients for efficacy analysis. Of these,
tumor types with overall assay sensitivity of 85% and 26 (26%) had pancreas, 23 (23%) had gastric, 11
specificity of more than 99%.50 The second generation (11%) had lymphoma, eight (8%) had urothelial,
microRNA assay also had 70% (59/84) concordance seven (7%) had cervical, and six (6%) had ovarian
with initial clinical diagnosis at presentation and sites predicted.
92% (77/84) agreement with final clinical diagnosis The one year survival rate was 44.0% in the site
in patients who clinically were deemed to have specific arm and 54.9% in the empiric carboplatin-
CUP.51 The microarray gene expression database paclitaxel arm (P=0.264). At a median follow-up
that was used to develop the 92 gene classifier was time of 9.7 (range 1.2-83.9) months for the site
also used by an independent group to develop a specific arm and 12.5 (0.9-66.5) months for the
distinct classifier for adenocarcinoma of unknown empiric carboplatin-paclitaxel arm, the median
primary, which identified 70/84 (83%) tumors of overall survival was 9.8 (95% confidence interval
known origin.52 Finally, a 10 gene quantitative 5.7 to 13.8) months for the site specific arm and 12.5
RT-PCR assay was developed that can identify six (8.9 to 16.1) months for the empiric chemotherapy
tumor types (lung, breast, colon, ovary, pancreas, arm (stratified log rank P=0.896), with a stratified
and prostate)53 and successfully assigned a tissue of Cox hazard ratio of 1.03 (0.68 to 1.56).55 Several
origin in 63/104 (61%) patients with CUP, although limitations of the study must be considered, however,

Table 3 | Summary of tissue of origin tests


Assay method Assay name and manufacturer No of tumor types identified
92 gene quantitative RT-PCR to assay mRNA expression CancerTypeID (Biotheranostics) 30 tumor types; 54 histological subtypes
mRNA gene expression microarray assaying 1550 genes (frozen tissue) Tissue Of Origin (TOO) (previously Pathwork, now 15 tumor types
or 2000 genes (FFPE tissue) Cancer Genetics)
64 microRNA expression microarray miRview mets2 (Rosetta Genomics, now defunct) 42 tumor types
1900 gene gene expression microarray CupPrint (Agendia BV) 48 tumor subtypes
10 gene quantitative RT-PCR CUP Assay (Veridex) 6 tumor types
FFPE=formalin fixed, paraffin embedded; RT-PCR=real time polymerase chain reaction.

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before concluding that site specific therapy does not so current clinical practice and future trials should

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improve outcomes. Firstly, this study did not enroll focus on identifying patients in whom identifying a
a sufficient number of patients in whom efficacy primary disease site would markedly affect treatment
could be evaluated to satisfy its initial statistical paradigms.
analysis, which called for a total sample size of 114
patients, possibly resulting in an underpowered Next generation sequencing
study. More importantly, the molecular assay that Carcinomas of unknown primary commonly have
was the integral biomarker for this study was not potentially targetable genomic alterations and
robustly validated with independent samples, mutations. Identifying genomic aberrations for
so whether this microarray based assay has the which aberration specific therapies are available
requisite sensitivity and specificity for clinical results in clinically meaningful changes in outcomes
use remains unclear, and we can thus not be sure for patients with a variety of solid tumors, including
whether the data from this study can be generalized non-small cell lung cancer, colorectal cancer, and
to other molecular classifiers. Finally, the patient mix melanoma. Available data suggest that carcinomas
was quite different from the previous retrospective of unknown primary similarly harbor clinically
studies, and the site specific therapies may not be meaningful rates of actionable mutations.
optimal for the most common disease types. Given A retrospective study of 200 carcinomas of
that the prognosis and treatment paradigms differ unknown primary that had next generation sequen­
markedly with lymphoma, any patients suspected to cing (NGS) performed by Foundation Medicine found
have lymphoma should optimally be treated under that 192 (96%) had at least one alteration identified,
a different paradigm and generally would not be with 169 (85%) having at least one clinically relevant
considered for empiric carboplatin-paclitaxel. alteration, and found 26 alterations for which
Although the Japanese study has several key targeted therapies approved in a known tumor type
flaws, the lack of a significant survival improvement are available.57 These included six (3%) with EGFR
from site of origin testing was also seen with the substitution, six (3%) with ERBB2 amplification,
presentation of the results of the GEFCAPI-04 11 (6%) with BRAF substitution, and two (1%) with
randomized trial at the ESMO congress in 2019. This ALK substitution.57 Importantly, cases were also
trial also showed no significant survival benefit of described of patients treated with targeted therapies,
using molecular classifiers to provide site specific such as crizotinib for MET amplification or ALK
therapy compared with empiric chemotherapy. In fusion, in which patients had significant responses,57
this study, patients with CUP were randomized 1:1 suggesting that identifying actionable alterations is
to receive either empiric gemcitabine-cisplatin or to clinically meaningful.
have gene expression testing followed by site specific A second retrospective study of 150 patients who
treatment. The classifiers used were extensively had NGS performed at Memorial Sloan Kettering
studied in previous publications, including the Cancer Center found that 137 (91%) had at least one
92 gene CancerTYPE ID classifier (n=222) and the alteration detected and 45 (30%) had potentially
Tissue Of Origin Pathwork test (n=21). The primary targetable alterations. These included six (4%) with
endpoint was progression-free survival. Patients BRAF V600E mutation, seven (5%) with ERBB2
were enrolled from March 2012 through February amplification, and four (3%) with FGFR2/3 fusion. Of
2018, and 243 patients were randomized. The these patients, 15 (10%) received targeted therapies,
most commonly reported primary tumor types from with time to treatment failure ranging from less than
molecular classifiers included pancreaticobiliary one month to 14 months; the longest durations of
cancer in 19%, squamous cell carcinoma in 11%, treatment (of five to more than 14 months) were seen
kidney cancer in 8%, and lung cancer in 8%. Tailored in patients with genomic rearrangements, including
site specific treatment was given in 91/123 patients ALK fusion, RET fusion, FGFR2 fusion, and NTRK1
randomized to site specific treatment. No significant fusion.58
difference was seen in median progression-free Use of circulating tumor DNA (ctDNA) to facilitate
survival, with a hazard ratio of 0.95 (0.72 to 1.25) assessment of genomic alterations via a liquid
on central radiologic review and 0.80 (0.60 to 1.06) biopsy is an emerging platform. Analyses of ctDNA
on local radiologic review. The secondary endpoint in patients with CUP have shown rates of actionable
of overall survival was also similar in the overall mutations comparable to the two previous series
population, with a hazard ratio of 0.92 (0.69 to 1.23) using tumor tissue. In a study from the University
and a median of 10 months versus 10.7 months.56 of California San Diego, 442 patients with CUP had
The results of the Japanese trial and GEFCAPI-04 ctDNA testing using the Guardant assay between
indicate that site specific therapy does not improve 2014 and 2016, during which time 54-70 genes
outcomes such as median progression-free or overall were tested using NGS. Of the samples from 442
survival compared with empiric chemotherapy. patients, 353 (80%) had ctDNA alterations detected
However, treatment paradigms are markedly different and 290 (66%) had at least one characterized,
and non-chemotherapy centered in some cancer likely pathogenic alteration. Targetable alterations
types, such as renal cell carcinoma. In these subsets included nine (2%) patients with BRAF V600E, four
of patients, it is plausible that treatment with empiric (1%) with EGFR L858R, and three (1%) with RET
chemotherapy could result in inferior outcomes, fusion. A total of 282/442 (64%) had an alteration

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theoretically actionable by an agent approved by the cases, whereas most of the inaccurately classified

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US Food and Drug Administration.59 This may thus samples had a probability below 50%. This classifier
serve as a potential novel platform for testing. successfully identified a likely tissue of origin with
When interpreting these retrospective reports of a probability greater than 50% in 95/141 (67%)
genomic tumor testing, it is important to note that the patients who clinically had CUP and occasionally
definition of a “potentially actionable” alteration is a resulted in changes in clinical management of
matter of debate. For example, although the ctDNA patients.60 With increasingly widespread use of
study reported that 64% of patients were found to NGS in metastatic carcinomas, these classifiers may
have a potentially actionable mutation, many of provide additional opportunities to identify tumor
those are truly only theoretically actionable, such as type in CUP. Caris has developed an analysis based on
the 164 patients with a TP53 mutation. These studies a machine learning algorithm trained and validated
also do not clearly describe the number of patients on more than 40 000 tumor samples with NGS data
who have therapy changed as a consequence of to identify primary tumor site, with tumor lineage
results of testing, and nor do they robustly show classifier accuracy ranging from 82% to 96%.61 This
clinical benefit of mutation specific testing. Finally, assay, dubbed the MI Genomic Profiling Similarity
even if a “potentially actionable” alteration is (GPS) score, is now commercially available. Overall,
detected, attaining access to targeted therapies may these early results seem to be comparable to the
be challenging as no targeted agents have regulatory accuracy of previous tissue of origin tests, although
approval in CUP. Given this, enrollment in clinical whether these result in clinically meaningful
trials is recommended, as this will allow patients improvements in outcome remains unknown.
access to targeted therapies while generating data to
determine the efficacy and safety of these therapies. Potential immunologic biomarkers
However, no difference exists in the rationale for An appreciable proportion of CUPs have biomarkers
performing large, multigene NGS in CUP compared suggestive of likely response to immune check­
with other advanced solid tumors. Recent regulatory point inhibitors, including microsatellite instability,
approvals of biomarker selected therapies agnostic of tumor mutation burden, and high programmed
primary tumor site, including treatments for cancers death-ligand 1 (PD-L1) expression. A retrospective
with NTRK fusions or microsatellite instability, show analysis of 389 cases of CUP used NGS to elucidate
that sequencing results may affect standard therapy total mutational load (TML) and microsatellite
choices, even in carcinoma of unknown primary. instability and immunohistochemistry to determine
However, additional prospective clinical trials would PD-L1 expression. High microsatellite instability was
ideally be conducted to show a clinically meaningful found in 7/389 (1.8%) cases and was confirmed by
benefit in other biomarker defined CUP populations, immunohistochemistry, showing loss of a mismatch
although such studies are unlikely to be conducted. repair protein in six cases. High TML (≥17 mutations/
The benefit is likely limited to the small proportion Mb) was found in 46/389 (11.8%) samples, and PD-
of patients who are found to have a clearly validated L1 expression (using SP142 antibody) on at least
alteration that serves as a predictive biomarker for a 5% of tumor cells was found in 82/365 (22.5%)
targeted therapy. samples.62 These findings present the hypothesis that
a subpopulation of CUPs may respond to immune
Potential utility of NGS results to identify tissue of checkpoint inhibitors, most notably the group with
origin high microsatellite instability tumors, who have the
Many genomic aberrations or mutation patterns that potential for a profound difference in their prognosis
are detected by NGS are strongly associated with with the use of checkpoint inhibitors. Further
certain primary tumor sites and thus may prove assessment of the optimal biomarker to use for
useful to identify a primary tumor site. For example, selection of patients for checkpoint immunotherapy
APC loss of function mutations are highly associated is important for all diseases, including CUP.
with colorectal cancers, and mutational signatures
consistent with ultraviolet light exposure are highly Prospective clinical trials of mutation testing in CUP
associated with cutaneous melanomas. These Given the clearly demonstrated benefit of treating
patterns may be discernible using machine learning patients whose cancer is found to harbor one of
to result in enhanced ability to determine a primary several genomic aberrations that can be detected
tumor type. Recently, NGS data from Memorial Sloan in a range of malignancies, clinical trials are now
Kettering were used to develop a genomics based prospectively assessing genomic aberrations and
classifier, using 7791 samples in 22 cancer types assigning patients to a therapy option based on
as a training set, and the model then underwent the underlying aberration. High profile trials such
cross validation on training data along with an as NCI-MATCH and TAPUR enroll patients with a
independent test set. On cross validation, 5748/7791 variety of cancers including CUP. The CUPISCO study
(73.8%) tumor types were successfully identified, (clinicaltrials.gov identifier NCT03498521) is a
and the classifier successfully identified tumor type randomized phase II trial focused on CUP that enrolls
in 8623/11 644 (74.1%) cases in an independent previously untreated patients with adenocarcinoma
test set. The probability of each prediction varied in or poorly differentiated carcinoma of unknown
different tumor types—it exceeded 95% in 43.5% of primary. CUPISCO compares molecularly directed

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therapy based on detected genomic aberrations with or metastatic samples.66 An ensemble of neural

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platinum based chemotherapy. In this study, patients networks was trained using data from the Cancer
receive three cycles of induction chemotherapy with Genome Atlas and used to retrospectively determine
the investigator’s choice of carboplatin-paclitaxel, primary tumor type from RNAseq data from 201
carboplatin-gemcitabine, or cisplatin-gemcitabine. metastatic tumors of known tumor types; it had an
Archival tissue is tested using hybrid capture based overall mean accuracy of 86%.67 A microarray DNA
comprehensive genomic profiling, and microsatellite methylation signature, dubbed EPICUP, was also
instability, TML, and genomic loss of heterozygosity trained to identify 38 tumor types and in a validation
are calculated. Additionally, tumor expression of study showed 97.7% (96.1% to 99.2%) sensitivity
PD-L1 is assessed by immunohistochemistry using and 99.6% (99.5% to 99.7%) specificity.68
DAKO 22C3 antibody. Patients with complete or
partial response or stable disease following induction Guidelines
chemotherapy are then randomized 3:1 to receive Guidelines from NCCN, ESMO, and NICE for
molecularly directed therapy based on the counsel of management of cancers of unknown or occult
a molecular tumor board and the final decision of the primary are highlighted throughout this review.
treating investigator, or otherwise to continue with The Spanish society of medical oncology (Sociedad
three additional cycles of chemotherapy. Patients Espanola de Oncologia Medica; SEOM) published
with progressive disease will receive molecularly clinical guidelines for cancer of unknown primary in
directed therapy as per the molecular tumor board 2017,69 which are generally concordant with NCCN
counsel. The primary endpoint of this study is and ESMO guidelines. NCCN guidelines specify that
investigator assessed progression-free survival, with “tumor sequencing and gene signature profiling for
accrual planned for 790 patients.63 tissue of origin is not recommended for standard
The study is still open and enrolling, and interim management at this time,” noting that “there
feasibility results were presented at the 2019 ESMO may be diagnostic benefit, though not necessarily
congress. Of 303 patients whose data were examined clinical benefit.” However, this recommendation was
retrospectively, 96 (32%) would have been matched category 3, indicating that major disagreement exists
to a molecularly directed therapy arm. Notably, key within the NCCN as to whether the intervention is
genomic alterations included HER2 (7%), PIK3CA appropriate.17 SEOM guidelines also state that “the
(6%), NF1 (6%), NF2 (5%), BRAF (4%), PTEN (4%), impact on clinical benefit of targeted treatment based
FGFR2 (4%), EGFR (4%), and MET (4%). Gene on molecular studies remains controversial and the
fusions were also observed, including ALK (1%), RET level of evidence and degree of recommendation is
(1%), and ROS1 (1%). High TML (≥20 mut/Mb) was low.” 69 ESMO guidelines similarly state that tissue of
found in 9%, and 1% had microsatellite instability. origin tests “may aid in the diagnosis of the putative
Additionally, 14% had high PD-L1 with a tumor primary tumour site in some patients… However,
proportion score of 50% or higher.64 their impact on patient outcome via administration
Additional studies of novel molecularly targeted of primary site-specific therapy remains questionable
systemic therapies in CUP are ongoing. For example, and unproven in randomized trials.” 18 Finally, NICE
the CUPem study is enrolling patients with CUP guidelines also direct: “Do not use gene-expression-
who have received at least one previous regimen of based profiling to identify primary tumours in
chemotherapy to receive the PD-1 antibody pembro­ patients with provisional CUP.” 19 All guidelines thus
lizumab. Correlative studies, including archival stress the need for randomized phase II and III studies
tissue at baseline to document PD-L1 expression, are to show the utility of tissue of origin testing. Future
planned, but there is no intrinsic biomarker selection versions of the guidelines will likely incorporate the
for the study (NCT03752333). The results of the final results of GEFCAPI-04 and CUPISCO, and final
NivoCUP study were presented at the 2020 ASCO publication will be eagerly awaited.
virtual meeting and showed an overall response
rate of 10/45 (22%, 95% confidence interval 11% Conclusion
to 37%) among patients who had received previous Modern oncologic treatment increasingly stresses
treatment and 2/11 (18%, 2% to 52%) among personalization of therapy, as novel predictive
previously untreated patients with CUP.65 biomarkers and targeted therapies are identified.
Current management of unfavorable subtypes of
Emerging assays CUP focuses on empiric chemotherapy. Studies to
Most of the published studies using tissue of date have not shown disease specific chemotherapy
origin testing with commercially available tests to result in a significant improvement in outcomes,
use relatively older technologies to assess gene with the exception of the small number of clinical
expression profiles. The proliferation of cancer scenarios in which therapy with curative intent is
genome data published has allowed for additional feasible. Just as is the case with patients in whom
analyses of transcriptomics, genomics, and epigeno­ the site of origin is known, future management of
mics to identify tissue of origin, which may offer more CUPs will emphasize identification of subgroups
accurate results. A 154 gene expression signature of patients who have diseases that are susceptible
correctly classified 97.1% of 9626 primary tumor to targeted therapies and immunotherapies on the
samples and 92% of 1248 poorly differentiated basis of a predictive biomarker.

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16  Pavlidis N, Briasoulis E, Hainsworth J, Greco FA. Diagnostic and


Research questions

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therapeutic management of cancer of an unknown primary.
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