NAMA: ANDIKO GALUH PRASETYA PUTRA

NIM: 191510501118
KELAS: BIOINFORMATIKA A
Tugas pohon filogeni

BERDASAR PADA PROTEIN

1. Persiapan data protein:

>cryptochrome [Marchantia paleacea
subsp. diptera]
MAARTIVWFRRDLRVEDNPALVAAARAGIVIPVFIWSPEEDGQFHPGRVSRWWLKQSLIHLDSSLK
SLGS
PLIMRKSPDTLTVLLDIVQQVGATQVFYNHLYDPVSLVRDHRVKQGLSIHNIPVHTFNGDLLYEPW
EVYD
DEGQAFTTFDDFWDKCMNMPFEPEAPLLSPRRLVGLPPGRISVGRIDDLGLENEYERSSNALLGRA
WAPG
WSSANKALEVFMKGPLHDYATHRIKADNANTSQLSPHLHFGEVSVRKIFHEARTKQILWARENSYV
GEQS
VGMFLRAIGFREYSRYLSFNFPFTHERSLLANLKSFPWRIDENSFKSWRQGRTGYPLVDAGMRELW
ATGW
LHNRIRVVVSSFCVKFLQLPWRWGMKYFWDTLLDADLECDVLGWQYISGSLPDGHELDRMENPQIE
GYKF
DPEGEYVRRWLPELSRLPTEWIHHPWDAPANVLRAAGVELGSNYPLPIVDISSARDQLQQSLAEMW
EREA
ASKAALANGSEEGLGETVETPGSCGPGVKMDVHRVVIRSSRAACSTASSRRDQLVPCMPTEDHKLA
AASI
MNWNQSPVDEEDEPVQPAFVPSQTGGLLDRPSDVRAEVIAHPPSDSSMAEAVHVDNELNSTAESSA
AVGR
RSEESRGEVPVWPQSSSSRPQRPHLEGLVPVVPEVRRATMNRRHLHSMQMVNLEARTSHKTSSLSA

>cryptochrome [Haematococcus
lacustris]
MDRSAPVIWWCRRDLRVDDNPSLLAALQSSPNLIPVFIWAPEEEGQFQPGRFSRWWTKQSVALFQR
LLGR
LGSRLIIRRCSDTAQCITQVVAETGAKAVYFNHLYDPISLVRDHEVKTALAKLGVECRSFNSDLLY
EPWE
LLDSAGEPFTSFETFWNRTLAMPYPPPFPLPAPHQLPPVSPNIDSTPLEKVDWFQTPEQEASCDQL
RFKW
KPGVEGAVEKLESFLTNRLTSFEADRAKVDRDSTSQLSPWIHIGTISVRYIFYRVCQQQAEWAAAA
SSPL
VPPQALPSITNSCKDFLQQMGYREYSRYLSFHFPFITERALLAHLRACPWRLDQAAFKAWRQGQTG
YPLV
DAAMRQLSSTGWCHNRMRVVAASFMVKNLLLPWQWGLKHYWDAQLDADLECDALGWQYVSGGMADA
HPFN
HIIDLEKEAQRFDADGEYVRRWLPVLSRMPTQHIHAPWRAPHAVLAAADVELGFDYPERVVTAEES
ARNM
AEACHVLQHCQASGSSDRRSGPYRTATLDLALAVAAGVARGSSGAGTGTGFVLCGEQGSAGNKGSN
EQDM
AGSVPALLQEAPPLVIASLQQRRSSAGPGQQQLLGARAGTVRIGAGAGAGSKAALPTAEQAVHDAA
VKAA
DVVAGDRWLGGPPQPAYPGTDFRKPGMQGNDGREGRGEGQGHGAWRRRMGRACQQHSTPFCQPMAS
EGAS
RHAAPAHYEVPAGRYHHHHQHRHQRQAQGQEEGEGQREQGCGGPGRSGLADFARELLVMEPAGAPG
QPGV
QPTPASWQDGQHEGGPFNSGYISTSSGCSEDMEAMSEEVVSNTIGLSRTQTSGWSCPRPQAPAPFP
QTAG
LGGPAAARAAAMAAEGPSVCTLPVSGPGSGRRPSGTMGAAASSVADNDGHGAVSAAPTNPEQQWCT
PVGS
AAAPEPEGGQDVDMVGSRDTSPDTSLDQQQDQHGLQQQASQPPLQQQWHTPAQHLLHYATSQPSVS
PSRP
HTKTSSLALAAVHCP

>cryptochrome [Salix suchowensis]

MSGGGCSIVWFRRDLRVEDNPALAAGVRAGAVVAVFVWAPEEEGHFYPGRVSRWWVKQSLAHLDSS
LRSL
GTSLVTKRSTDSVSTLLEVVKSTGATQLFFNQLYDPLSLVRDHRVKEVLTAQGIAVRSFNADLLYE
PWDV
NDVEGRPFTTFAAFWDRCLSMPFDPEAPLLPPKRIISGDASKCPSEMLVFEDESEKGSNALLARAW
APGW
SNADKALTTFINGPLIEYSKNRRKADSATTSFLSPHLHFGEVSVRKVFHLVRIKQVLWANEGNKAG
EESV
NLFLKSIGLREYSRYLSFNHPYSHERPLLGHLKFFPWFVDEGYFKAWRQGRTGYPLVDAGMRELWA
TGWL
HDRIRVVVASFFVKVLQLPWRWGMKYFWDTLLDADLESDALGWQYITGTLPDGREFDRIDNPQFEG
YKFD
PDGEYVRRWLPELARLPTEWIHHPWNAPESVLQAAGIELGSNYPLPIVWIDAAKVRLEEALSEMWQ
QEAA
SRAAIENGTEEGLGDSFESAPIAFPQDINMEENHETVRNNPPATNRRYEDQMVPSMTSSFLRIQDE
ETSS
DVRNSSGDGRAEVPIDVNVNQQPRRDTLNQGFVQSIDNDNGLPPFNVLRGLANVEDSTAESSSGGS
RRER
DGVIVPVWSPPTSSYSEQFVGDENGIGATSSYLPRHPQSHQILNWRRLSQTG
>cryptochrome [Volvox carteri f.
nagariensis]
MAMPGTVARFLLEGLVEVRREVWQIQEAAAAPRVCPGGTVAHPPSPPSPPSSPLPSSFSAPPFPHD
AGLL
HTSSASEGSDAAAVAVAVAVAGGGGGGNGGNGGDGGGGGAAAATAAAAAAAAVGAPNEPVPVVDSG
ADIS
SCSSSTGGGSDGGNGGSDGGGGGGVLIRFGRPEEVLPGLLTLAAEHNPQLRHVSLHHHLDVLEEAV
EVER
EVAGALRKWGAARGVSVSVHTYWDRTLYHPDDLPYHLYDRAAKASSQGGSGMAGGGLPRAPSPPHS
PTRP
LPLNADKNRFRNLPRVMTDFRKATQAAASVRPSLPAPTALPPLPPPFNEAARSLEMTAQTVGQRQQ
QQHM
QTSEEGAAGGDWGLGSIPRTIEEVYDAAGARRALQRLQELVGLDYSQLLPPVEPEGPPAPHDPRTA
FPFH
AGYSSAVRRLRYYVWGHPEGAPPELPSDPRDGAGSSSQPHGAPVSSPPSLLYFTNTRAQAVGVDSS
TKLS
PFVALGCITSRQIHEELSTTPPLPGSCFGTLVSSPFALAGVNPAWVCIRARCTCRWSSSSVPAPAE
CDWL
AMHLCIRDFFIFTTLKEGDAVLDERGIMGLPVSWRNDMETFTRWAQGRTGLPFVDANMRELAVTGW
MSNR
GRQNVASLLTKDLGVDWRWGAELFESLLVDCDVAVNYCNWNYFAGIGNDPRNRHFKTVTQPWAMTA
EEAE
QYSFVLGRDYPFPLVDPANHVGQLTGTGKRRNKAKAQT

>cryptochrome [Coccomyxa
subellipsoidea C-169]
MVSNDIKKAAIVWIRSDIRLADHAPLVSACSLPQTCFVLPVYCLSPALLQPRCNIPGLNGIPVLGP
HRGR
FLLEALQALQQQLAARGSKLHFAVSRPAEEIPALVRGLAGQVSHVDLYHYLQIGRHSVEEEDAVAD
AFHA
ACKESQLTSEVHHFWGHTLYHPHNALAALKPPARDSNSQLAVESHGFVREPLPAPDQIPPFPDSIP
SAAP
LPKKASTDRTDADAIAALPSISVAQEGMPGEASVSRNDSGAADGNLSAPAPIDSFKDTRMLAGGVD
NSAK
LSAYLAAGCLSPRMVYAEIQKARNQSGGDSGHSWLIMHLIIRQAPPLQASISLPRDFFLFTALKEG
DKLE
RPEGIRGEARQWRHCDEEFLRWCRGRTGFPFVDACMRELAATGYMSNRGRQNVSSFLCKAMGHSWQ
VGAA
LFETLLVDHDWAVNTVNWAYFAGVGNDPRDRIFRTVSQGMTYDPEAQHINSWVPELSNLPGDFAHR
PWKL
EKGAAEACGFDLCRDYVPPLLDASTQIAINYGKK

>cryptochrome [Oryza sativa Japonica

Group]
MMAAEGIIVQSFNADLLYEPWEVVDDEGQSFTMFAPFWNRCLSMPYDPAAPLLPPKRINSGDLSMC
PSDD
LIFEDDSEEGSNALLARAWSPGWQNRDKALTAFLNGPLIHYSVNRKKADSASTSLLSPYLHFGELS
VRKV
FHLVRMKQLVWSNEGNRAAEESCTLFLRSIGLREYSRYLSFNHPCSHEKPLLAHLRFFPWVINECY
FKIW
RQGRTGYPLVDAGMRELWATGWLHDRIRVVVSSFFVKVLQLPWRWGMKYFWDTLLDADLESDALGW
QYIS
GSLPDGRELDRIDNPQLEGYKFDPHGEYVRRWLPELARLPTEWIHHPWDAPASVLQAAGVELGSNY
PLPI
VGLDRANARLQEALSEMWQLEAASRAAMDNGMEEGLGDSSEVPPIEFPRELQMEVDREPARVTANV
LTTA
RRREDQMVPTMTSSLNRAETEISADFMNSVDSRAEVPTRVNFEPRTEREENFRTTAGNVARTNGIH
EHNN
FQQPQHRMRNVLAPSVSEASSGWTGREGGVVPVWSPPAASDHSETFASDEADISSRSYLDRHPQSH
RLMN
WSQLSQSL

>cryptochrome [Chloropicon primus]

MTKMANGNGLKSSSKRLVLWFRNDLRLHDNAIVDKAKRSVASGDCKEVLPLYCFDPRVFQRSEYGS
PKTG
VHRAKFLVESVMDLRERLRSVGSDLLIAVNKPENVIADLVGDNGTSVFAQREVTHEERVTESLVEG
ILAG
SERARLELFWGATLYHRGDLPFKSNLRDLPDVFTPFRNKVEKQCSVRSLLSEPRAGDLPLGDAANL
PLVK
KMTNYEPSLKDILPGVDVPDQDERSSLSFRGGEAAALERLRYYLWDSDLLSTYFETRNGMVGGDYS
TKFS
PWLANGCLSPRKIYHEISEYERERVANKSTYWVVFELIWRDFFHFYCEKHGNSVFYPGGPAGRRTD
WNND
WDALRRWKEGRTGVPLVDANMRELLHTGFMSNRGRQNVASFLALDLKGDWRVGADHFESLLLDYDV
CSNW
GNWVSAAGLTGGRVNRFNIVKQSKDYDKAGEYIKLWIPELRKVPTQYIHKPWEMPRSVQESSGCFI
GQDY
PNPVATSKAWETYNKGGKKSEKSKPYRGYYEKRSVRKEKKKSNFEMYG
2. Input Data Protein
3. Hasil
Alignment :
Pohon Filogeni:
Guide Tree:

Hasil Alignment dengan Pewarnaan: