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Protein Engineering
Protein Engineering
Protein Engineering
Olson, Computer
47. K. Strohmaier, R. Franze, K.-H. Adam, J . Gen. Infect. Immun. 16, 743 (1977). Graohics 15. 133 (1981).
Virol. 59, 295 (1982). 55. A. Anilionis, W. H . Wunner, P. J. Curtis, Na- 60. M. ~ o n n o l l unpublished
~, results.
48. S. Alexander, H . Alexander, N. Green, R. A. ture (London) 294, 275 (1981). 61. We acknowledge the efforts of our co-workers
Lerner, personal communication. 56. B. Dietzschold, T. J. Wictor, R. MacFarlan, A. who contributed to designing the experiments
49. G. Miiller, M. Shapira, R. Arnon, Proc. Natl. Varrichio, J . Virol., in press. and collecting the data to which we refer herein,
Acad. Sci. U . S . A . 7 9 , 569 (1982). 57. J. Beale, Nature (London) 298, 14 (1982); A. M. and thank many of our colleagues for sharing
50. A. M. Prince, H. Ikram, T. P. Hopp, ibid., p. Q. King, B. 0 . Underwood, D. McCahon, J. W. their data in advance of publication. We also
579. I. Newman, F. Brown, ibid. 293, 479 (1981). thank A. Olson for producing Fig. 1 and R.
51. J . L. Gerin et al., ibid., in press. 58. L. Chedid, F. Audibert, A. Johnson, Prog. Ogata for comments on the manuscript. Portions
52. D. L. Peterson,N. Natu, F. Gavilanes, J . Biol. Allergy 25, 63 (1978); H. Langbeheim, R. Ar- of this work were supported by grants from the
Chem. 257, 10414 (1982). non, M. Sela, Immunology 35, 573 (1978); F . American Cancer Society (NP-359) and the Na-
53. P. K . Bhatnagar, E. Papas, H. E. Blum, D. R. Audibert, M. Jolivet, L. Chedid, R. Amon, M. tional Institutes of Health (R01 A1 18509). This
Milich, D. Nitecki, M. J. Kareis, G . N . Vyas, Sela, Proc. Natl. Acad. Sci. U . S . A . 7 9 , 5042 is paper No. 2824 of the Research Institute of
Proc. Natl. Acad. Sci. U.S.A. 7 9 , 4400 (1982). (1982). Scripps Clinic.
Many schemes for enzyme immobili- include the use of zero gravity aboard by a simple Fourier difference analysis,
zation (16) also point to likely success the space shuttle to eliminate convective as has been done for several tempera-
with certain types of modifications. By effects and improve crystallization and, ture-sensitive mutants of T4 lysozyme
more or less blindly derivatizing the sur- once the native structure has been (4, 5). If the modified protein is not
face of enzymes through the addition of solved, the use of protein engineering isomorphous, molecular replacement
polymers and other ligands (17), it has techniques to modify the protein in order techniques might be used to solve the
been possible to alter the solubility of to simplify subsequent crystallizations or new structure with much less effort than
enzymes, increase their resistance to obtain better isomorphous derivatives. was required for the initial structure de-
proteases and thermal denaturation, and Major advances have been made in the termination. The structural differences
alter the local pH at the active site to collection and analysis of diffraction data that result from each directed modifica-
advantage. All these methods are ex- for proteins. Synchrotron x-ray sources tion could thus be analyzed very rapidly.
tremely crude in comparison with what are now routinely used for protein crys- It is this ability to correlate experimen-
should be possible starting with an accu- tallography in Europe (19), and several tally observed differences in structure
rate crystal structure for the enzyme and facilities will soon be operational in the with differences in functional properties
an artificial gene that can be specifically United States (20). The higher x-ray flux that will be the key to developing predic-
changed at will. from such sources greatly reduces the tive rules for protein engineering.
data collection time, and the fact that the By collecting diffraction data over a
x-ray wavelength is tunable should per- range of temperatures (24) or by using
Protein Structure Determination mit phase calculation from a single iso- short-pulse x-ray sources it should also
morphous derivative by anomalous scat- be possible to learn something about the
X-ray diffraction methods are the only tering techniques. The use of position- dynamic aspects of the protein structure,
techniques at present that can provide sensitive x-ray detectors (Fig. 1 ) in place which are averaged out by traditional
the detailed structural information at the of photographic film for recording the methods. It is also possible to obtain
atomic scale which will be required for diffraction patterns, especially when experimental data on protein dynamics
protein engineering. Although protein combined with high-brilliance sources, by nuclear magnetic resonance (NMR)
crystallography has traditionally been a will further reduce data collection time techniques. Recently, two-dimensional
very laborious process, recent advances and simplify some of the subsequent proton NMR techniques have been de-
offer the prospect of reducing the time processing steps (21). Better algorithms veloped which may also provide detailed
and effort required to solve new protein have facilitated the refinement of protein structural information on proteins in so-
structures to 1 or 2 years. The most models at higher resolution (22), and lution rather than in crystals (25). New
unpredictable aspect of the problem, techniques such as molecular replace- methods permit the assignment of peaks
which is likely to remain the rate-limiting ment (23) can significantly reduce the in high-resolution NMR spectra to spe-
step in the crystallographic process, is effort required to solve related struc- cific protons in the protein. A distance
obtaining diffraction-quality crystals of tures. The latter technique will be partic- matrix can be constructed from such
the protein. Some progress has been ularly useful for structure difference de- data and can then be converted to a set
made in recent years ( I @ , but a more terminations, which will be required to of three-dimensional coordinates for the
systematic approach with simple auto- develop protein engineering. If crystals molecule. So far the method has been
mated equipment could make the search of a modified enzyme are isomorphous successfully applied only to small pep-
for appropriate crystallization conditions with those of the native enzyme, the tides and it is not clear whether it can be
more efficient. Other possibilities might structural differences can be determined extended to average-sized proteins.
SCIENCE. VOL. 219
Protein Modeling
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670 SCIENCE, VOL. 219
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ha---,.
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