If you examine the stained glass window, you'll notice each quarter of the circle

depicts a keeper holding a weapon. The one closest to the altar with the sword is
holding a sword, so to solve the puzzle, you need to find the weapons for the other
altars.

Here's how to solve the stained glass window puzzle:

Warhammer: Northeast
Longsword: Northwest (already placed)
Battleaxe: southwest (broken piece)
Mace: southeast
If it helps, you can use the tactical view (press O) to help orient yourself: the
minimap has the compass markers on it too. I used the Throw command to place the
weapons, as I couldn't find a more elegant option.

Once you've placed all the weapons, you'll get the Morninglord's Radiance buff
which causes your weapon attacks to deal additional Radiant damage. It's handy for
a battle ahead if you're planning on heading further up the mountain pass.

Save your game before you approach then head up the steps. As you get near, one of
the eagles will get annoyed: you can try Animal Handling, though the difficulty
class for the roll is high at 18, or you can attack the bird. I don't have Animal
Speech, so you might be able to talk the eagle around, but I chose violence. Just
be careful here as the eagle can easily yeet you—or one of your party members—off
the edge of the building.

Once they've been taken care of, pick up the warhammer and head for the next
weapon.