Professional Documents
Culture Documents
The Physician Project
The Physician Project
Written by:
Robin Sia
Contributions from:
Amanda Ma, Benjamin Massouridis & Harley Owens
We’re a group of physician trainees who found that the process of preparing for
the exams can be a long road and the content needed to cover is endless. It is not
possible to learn every single topic in detail but it is vital to cover the basics and
have the foundation to work out the answers. We hope this provides a guide into
what topics are essential and more detailed reading can be done around them,
but can also provide a quick reference and refresher prior to the exams.
Good luck for the preparation, just remind yourself that you’re becoming a
better clinician and physician day by day (plus, this will help in the clinical
examination too). You’ll do great for sure!
Best wishes,
Robin Sia
BPT3 Trainee & Medical Registrar
Email: robinsiawaijen@gmail.com
HFrEF HFpEF
- Symptoms and signs of HF AND - Symptoms and signs of HF
LVEF<50% - LVEF>50%
- Objective evidence of heart disease
HFmrEF (Structural, diastolic dysfunction on
- EF 41-49% (treat as HFrEF although cardiac cath, ECG, echo, stress test
less evidence) or NTproBNP)
JVP Waveform
Source: https://www.mdpi.com/2075-4418/12/10/2407
Mitral Stenosis Signs: Malar flush, prominent A wave, mid-diastolic murmur, tapping
apex beat, small pulse pressure, snap close to S2, AF, pHTN
Dapagliflozin:
eGFR>25
Empagliflozin:
eGFR>30
Not to be used in
T1DM (risk of
ketoacidosis)
-Tafamidis
-Patisiren
-Canakinumab
-Rilonacept
-Volanesorsen
-Vericiguat
-Omecamtiv Mecarbil
-Mavacamten
-Icosapent Ethyl
-Dobutamine
-Noradrenaline
-Levosimendan
-Anthracyclines, taxanes, platinum-based chemotherapy and HER2 antagonist on
cardiotoxicity
-CYP and P-gp interactions with common CVD drugs (important for long case)
Vasopressors/Inotropes
Adrenaline ++ +++ ++
Dobutamine + +++ ++
Dopamine +++ ++ +
Source:https://www.grepmed.com/images/12660/diagnosis-pemphigoid-bullous-comparison-vulgaris
Skin Cancer
Osteoporosis Low bone mass, architecture and risk of fracture - T-score <-2.5
Rx:
Non-pharmacological - vision, proprioception, balance, falls risk
Pharmacoligcal therapy:
- Vit D replacement
- Antiresorptives - Bisphosphonates, Denosumab, SERM,
HRT
- Anabolic agents - Romosozumab, Teriparatide
Risk of osteosarcoma, HF
Hypercalcemia Causes:
- PTH dependent ( HyperPTH, FHH, autoimmune)
- PTH independent (Cancer, granulomatous disease, milk
alkali syndrome, endocrinopathy, immobilisation)
Pituitary Disorders
Symptoms:
Visual field defects
Extraocular muscle palsy
Headache
Bitemporal hemianopia
Sequelae of endocrinopathy (Amenorrhea, decreased libido,
Infertility, DI, Apoplexy)
Prolactinoma Hypogonadism
Very high prolactin
Rx: Dopamine agonist - bromocriptine, cabergoline
Rx:
- Medical - Pasireotide, Cabergoline
- Surgical - Bilateral adrenalectomy, pituitary radiotherapy
Thyroid disorders
MEDICATIONS
Oral Hypoglycaemic agents
Class Agents Mode of Action Side effects
Biguanides Metformin AMP Kinase activator GI symptoms, B12
deficiency, Lactic
Acidosis
Sulphonylureas Gliclazide, Katp channel Weight gain,
Glibenclamide hypoglycemia
Thiazolidinediones Glitazone PPARgamma agonist Heart failure
Bladder ca
Alpha-glucosidase Acarbose Flatulence
Saxagliptin can
cause heart failure
GLP-1 agonist Semaglutide, Promotes incretin Nausea and
Liraglutide vomiting. Benefit in
MACE.
SGLT2 inhibitor Empagliflozin, Inhibits SGLT2 at PCT UTI esp candida,
Dapagliflozin – hence promoting Fournier’s gangrene,
glycosuria and TG Euglycemic
feedback. Multiple Ketoacidosis,
mechanisms for HF and Autoamputation,
CKD. Atypical fractures
Antithyroid agents
Thionamide Propylthiouracil Additionally blocks Fulminant
(PTU) conversion from T4-> inflammatory
T3 (useful in thyroid hepatitis
storm)
Safe in pregnancy
Thionamide Carbimazole Blocks thyroid hormone Non-threatening
synthesis cholestasis,
Agranulocytosis,
MAHA, Vasculitis
Teratogenic - aplasia
cutis, omphalocoele
and other birth
defects.
Can be used in 2nd
and 3rd trimester
Rectal involvement
Complications: Perianal fistula, strictures, Bloody diarrhea
fissures
Rx:
Rx (MORE COMPLEX): 5ASA (oral or rectal)
Early TNF inhibition preferred Steroids
No role of 5-ASA drugs Thiopurines (AZA, MMF)
MTX vs AZA can be considered for
induction
Tacrolimus (fistula)
Anti-TNFs (Infliximab, Adalimumab,
Golimumab)
Vedolizumab (MAd-CAM-1)
Ustekinumab (IL-12/23)
Tofacitinib (JAKi) Anti-TNFs (Infliximab, Adalimumab,
Golimumab)
Vedolizumab (MAd-CAM-1)
Ustekinumab (IL-12/23)
Tofacitinib (JAKi)
Others: MTX, cyclosporine (salvage therapy
vs infliximab)
3 main pathophysiology:
- Genetic predisposition
- Environmental (smoking, infection, drugs - NSAIDs, stress)
- Mucosal dysfunction
Inflammatory response
- TNF alpha, IL1, IL6, IFNgamma and IL12/23
Histopathology:
- Granuloma (non-caseating)
- Panneth cell metaplasia
- Crypt disruption
- Basal lymphoplasmacytosis
Coeliac Disease
Associated with other autoimmune disease as well (Autoimmune thyroid disease, T1DM)
Other complications:
- Haematological - Fe def anaemia, pancytopenia, hyposplenism, T-cell lymphoma
- Neurological - Peripheral neuropathy, CNS dysfunction, Mood disorders
- Gastrointestinal - oral aphthous ulceration, reflux esophagitis, microscopic colitis,
pancreatic insufficiency, PSC, PBC, Metabolic-Associated Fatty Liver Disease(MAFLD)
- Bones and joints - # and osteoporosis, dental enamel defects
- Skin - Dermatitis herpetiformis
- Obstetric - miscarriage, infertility
- Others: IgAN, Down’s, Turner’s and sepsis
Ix: tTG-IgA, DGP-IgG, small bowel biopsy ( requires ongoing gluten consumption for
maximum yield - villous atrophy, intraepithelial lymphocytes, crypt hyperplasia)
DDx: Infection(Tropical sprue, H.pylori, Giardia lamblia, SIBO), CVID, Crohn’s, Cow’s
milk protein intolerance (CMPI), autoimmune enteropathy, Drugs (Olmesartan, NSAIDs,
MMF)
Subtypes: Non-responsive Coeliac Disease (NRCD), Refractory Coeliac Disease , Non-
coeliac gluten sensitivity
Rx: Gluten-free diet , complication screen and nutrition, family screening, surveillance and
vaccination
Extrahepatic:
- Non-Hodgkin’s Lymphoma
- Cryoglobulinaemic vasculitis
- MPGN
- Sicca symptoms
- Porphyria Cutanea Tarda
- Lichen Planus
Ix:
- Screening: HepCAb = exposure, HCV RNA = current
infection
- Fibroscan/APRI
- HCC surveillance
Agents used:
- NS3A/NS4A - Glecaprevir
- NS5A – Valpatasvir
- NS5B - Sofosbuvir
-> Combinations: Sofosbuvir/Velpatasvir (Epclusa) and
Glecapravir/Pibrentasvir (Mavyret)
-> Multiple Drug-drug interaction (important for long case)
Ix:
Anti-HBs, HBs Ag, Anti-HBc
*Learn around - immunized vs prev infection vs acute and chronic
infection
Rx:
Entecavir
TDF/TAF
- TDF can cause nephropathy and osteoporosis, Fanconi
Syndrome
Surveillance is key
Mixed:
Mostly anti-seizure drugs
Cholestatic:
Antibiotics (Flucloxacillin)
Hormonal therapy
Complications:
- Nutritional status
- Coagulopathy
- Ascites
- Renal dysfunction (Hepato-renal syndrome)
- Hepatic encephalopathy
- Pulmonary disorder (Shunt)
- Hepatic hydrothorax
- Variceal haemorrhage
- Immune dysfunction
Other complications:
Malnutrition - high protein low salt diet
Sarcopenia
Osteoporosis
HCC
Antibody Disease
Anti-tTG, anti-endomysial Coeliac Disease
Ab, anti-DGP
Anti-eTG Dermatitis Herpetiformis
ASCA Crohn’s disease (pANCA for UC)
AMA Primary Biliary Cirrhosis
Anti-SMA Autoimmune Hepatitis
Anti-LKM1 Autoimmune Hepatitis (usually younger age)
Anti- SLA/LP Autoimmune Hepatitis (severe)
Anti-Actin Coeliac Disease
Faecal calprotectin IBD (UC and Crohn’s)
- Can be elevated in any active colitis
HLADQ2/DQ8 Coeliac Disease
Serum ceruloplasmin and Wilson’s disease
urinary copper levels
Steps in Interpretation:
1) Anion Gap
2) Winter’s formula = 1.5(HCO3)
+8
3) Delta-delta gap
Ref: https://www.grepmed.com/images/9343/causes-differential-
alkalosis-diagnosis-metabolic
NAGMA: HARDASS Respiratory Acidosis and Alkalosis
Hyperchloraemia
Addison’s disease/Adrenal
insufficiency
RTA
Diarrhea
Acetazolamide
Spironolactone
Saline
First seizure 6 months (if seizure free, 5 years (if seizure free and
with or without medications) EEG in last 6 month
demonstrate no epileptiform
activity)
Silent mutation DNA sequence that does not change the amino acid sequence
Missense mutation A type of point mutation that causes single amino acid change
Nonsense mutation A type of point mutation that changes a codon to stop codon
Other complications:
- Un-identified bright objects
- Seizures
- Learning difficulties
- CNS tumours
- Malignant Peripheral Nerve Sheath tumors
- Spinal neurofibromas
- Scoliosis
- Macrocephaly
- HTN
- Higher mortality
Other complications:
- Cataracts
- Hearing loss
- Focal weakness
- Balance dysfunction
Major Features:
Skin - facial angiomas, ungual fibromas, shagreen patches,
hypomelanotic macules
CNS - subependymal giant cell astrocytoma, subependymal
nodule
Others: Renal angiomyolipoma, cardiac rhabdomyoma,
retinal hamartoma, lymphangioleiomyomatosis
Rx: mTORi
X-linked
Features:
- Low IQ
- Behavioural problems
- Physical features - long face, large ears, testicular
enlargement
- Seizures
GAA repeats
Features:
- Dysmorphism
- Low IQ
- Hypotonia
- Hearing and vision loss
- Alzheimers dementia earlier
- Congenital Heart disease
- Hypothyroidism
- GIT (Duodenal atresia, Hirschsprung’s)
- Leukaemia (ALL and AML)
Turner 45 XO karyotype
Features:
- Short stature
- Web neck
- Pubertal delay
- Gonadal dysgenesis
- Normal IQ
- Renal tract malformations
- Cardiac anomalies (CoA, Bicuspid aortic valve)
- Endocrinopathies
- HTN
- Congenital lymphoedema
Features:
- Tall and long limbs
- Joint hypermobility
- CVS - Aortic dilation and dissection, AR/MR
- Lens dislocation
- Chest wall deformity
Rx: Prophylactic beta-blockers or RAAS blockade for aortic
root dilatation, surgical repair of aortic root/valvulopathy
Klinefelter 47 XXY
Features:
- Hypogonadotropic hypogonadism
- Eunuchoid body habitus
- Gynaecomastia
- IQ decreased
- Sexual dysfunction
- Behavioural phenotype
- Endocrinopathy
- Higher malignancy risk
Knudson’s two hit hypothesis for tumour suppressor gene (Loss of Function)
Protooncogene (Gain of Function)
Usually autosomal dominant
TP53 gene
Cowden Syndrome Benign cancer syndrome, follicular thyroid ca, large head
circumference, trichilemminomas, Lhermitte Duclos
PTEN gene
STK11 gene
VHL CRCC
Retinal hemangioblastoma
CNS hemangioblastoma
Pheochromocytoma
Investigations in Genetics
Chromosome testing
- FISH
- MLPA
- Karyotype
- Microarray
*Worthwhile going through specifics and limitations of each investigations and how it can
affect detection of large defects, or picking of VUS. Not uncommon to be tested on!
Pathophysiology
C9ORF72 FTD-MND (Frontotemporal Dementia with Mononeuron
Disease)
Alpha Synuclein Parkinson’s, MSA, Lewy Body Dementia
Tauopathies PSP, CBD, Alzheimer’s
Neurofibrillary tangles Alzheimer’s
14-3-3 protein (CSF) Creutzfeldt-Jakob Disease
Aging physiology
Cardiovascular
Respiratory
Renal
Prescribing in the elderly. Edwina Holbeach, Paul Yates. Australian Family Physician Vol. 39, No. 10, october 2010 p728-733.
https://www.nps.org.au/australian-prescriber/articles/combination-psychotropic-medicine-use-in-older-adults-and-risk-of-hip-fracture
Myelodysplastic syndrome >60 years age, bone marrow failure with peripheral
(MDS) cytopenia
May progress to AML
CD13, 33
Classification:
- AML with recurrent genetic abnormalities
- AML with dysplasia-related changes
- Therapy-related myeloid neoplasms
- AML not otherwise categorised
- Myeloid neoplasm with germline
predisposition
Rx: TKI
Allogenic BMT
BiTE therapy (Bispecific T-cell engaging) - similar to
CAR-T cell (can cause ICANS and CRS)
CD5, 19,23
MM
- t(4,14), t(14,16)
- CD38 and 138
- BMAT - Dutcher bodies
Rx for MM
- Glucocorticoids
- IMiDs: Lenalidomide
- Proteasome inhibitors: Bortezomib
- MAb: Daratumumab
- CTx: Melphalan, CYC
- RTx
- Bisphosphonates
DLBCL
- Rule of 1/3rds - ⅓ Adult NHL, ⅓ early stage,
⅓ extranodal, ⅓ B symptoms
- Pan-B-cell markers (CD19,20,22)
Hairy-cell leukaemia
- CD25 and CD103
- BRAF V600E mutation
Workup
Clinical
- detailed history and exam
- Performance status (ECOG)
Investigations:
- Endoscopy, MRI-B when appropriate
- CT (Chest,abdo,pelvis), FDG-PET
- LP - aggressive lymphomas/ intrathecal chemotherapy
- Pre-treatment - FBE, blood film, hepatic/cardiac/renal workup, LDH, serum-B2
microglobulin level
Etiologies: HIV, HCV and HBV testing
Pathogens Lymphomas
HIV DLBCL
Burkitt’s lymphoma
Castleman’s disease
Hodgkin’s Lymphoma
Antibodies
Anti-cardiolipin, Antiphospholipid syndrome (APLS)
lupus anticoagulant
and anti-beta2
glycoprotein
Anti-PF4 Heparin-Induced Thrombotic Thrombocytopenia (HITT), Vaccine-
induced Thrombotic Thrombocytopenia (VITT)
https://www.transfusion.com.au/adverse_events/risks/estimates#sthash.biFXYon0.dpuf
Multiple Myeloma
Anaemia
Haemoglobinopathies:
- Quantitative - Thalassaemia
- Qualitative - HbS, HbE, HbD
Haemolysis
- Intracorpuscular - Enzyme (G6PD, PK), membrane
defect (hereditary spherocytosis), SCD, PNH, B12
deficiency, Thalassaemia
- Extracorpuscular - MAHA, Infection, Chemicals,
AIHA
-> Ix: Peripheral blood film (Reticulocytosis), LDH,
Bilirubin, Haptoglobin, urine haemoglobin/haemosiderin
(Others to consider - EMA, CD55/59, Genetic studies)
Haemolytic Anaemia
Drug Hypersensitivity
Type A: pharmacological (80%)
Type B: hypersensitivity
- immune mediated allergic (5-10%)
- IgE mediated/mast cell activation (<1 hr): urticaria, angioedema, bronchospasm,
anaphylaxis
- T cell mediated (>1hr): maculopapular, morbilliform, SJS
- Others: immune complex, cytotoxic reaction
Hypersensitivity reactions
Conditions Features
C1 inhibitor Deficiency
Bradykinin driven (no histamine) - hence ACEI contraindicated
Symptoms:
Asymmetrical non-pitting edema
Absence of urticaria
May manifest in any organ
Risk of laryngeal involvement
Pharmacodynamics
Antifungals
Class Mechanism Examples Adverse Effects
Triozoles Inhibit ergosterol Ketoconazole, Drug-drug interactions
synthesis, Itraconazole, Fluconazole - candidaemia,
fungistatic, CYP3A4 Fluconazole, prophylaxis in SCT
inhibitors Voriconazole, Voriconazole - deranged
Posaconazole, LFTs
Isavuconazole
Polyenes Binds to ergosterol Amphotericin B Conventional: significant
nephrotoxicity
Liposomal: less
nephrotoxicity and infusion
reaction
Echinocandin Beta-D-glucan Capsofungin Drug-drug interaction
s synthetase inhibitor Covers broadly (not C.
Catalase negative:
Alpha haemolytic - Strep
pneumonia, viridans
Beta haemolytic - Strep
pyogenes, agaliactae
Gamma - enterococcus
faecalis, faecium
Gram negative coccus Gram negative bacilli Gram negative coccobacilli
Neiserria Kiebesella Haemophilus
Ecoli Bordetella
Enterobacter Brucella
Citrobacter Filaria
Serratia Pasteurella
Vibrio Legionella
Pseudomonas
Proteus
H.pylori
Campylobacter
Salmonella
Shigella
Yersinia
5th: ceftaroline,
ceftobiprole
30S Tetracyclines Tetracycline, Prevent binding Broad G+ve and Proteus Avoid with Ca/Mg/Fe
doxycycline, of tRNA prevents G-ve mirabilis: supplementation
minocycline chain elongation Intracellular incl intrinsic Hepatotoxicity,
mycoplasma resistance teratogenic, teeth, throat,
Protozoan tan
Note: resistance
common
Common
infections:
-Acne
-Cellulitis
-Bartonella
-Atypical
pneumonia
-Ticks
-STD
-Penicillin
resistant syphilis
Anti-metabolites
Class Mechanism Uses Do not use AE/Other
Trimethoprim, Sequential inhibition PJP Anaerobes Rash, bone marrow
sulfamethoxazole of folate synthesis (at Parasites: With suppression, increase in
different steps) toxoplasma gondii methotrexate Cr (20%), ATN, G6PD
synergistic Nocardia
Sternotrephomonas
UTI/Cystitis
Osteomyelitis
HIV Medications
Tuberculosis
Epidemiology: 20% of the population has latent TB
Tuberculous meningitis
- All tests can be negative
- CSF features: Elevated Protein, low glucose and elevated lymphocytes
Management:
- Latent TB - 3 months Isoniazid+Rifampicin OR 4 months Rifampicin OR 9 months
Isoniazid
- Active TB - 2 months RIPE then 4 months of Isoniazid+Rifampicin
MDR-TB
- Isoniazid and Rifampicin
XDR-TB
- Similar to MDR-TB + Fluoroquinolone + ⅓ Injectables
TB Complications:
- Bronchiectasis
- Pneumothorax
- Bronchopleural fistula
- Mycetomas
- Massive haemoptysis
- Cor pulmonale
- Post-obstructive pneumonia
- Lung cancer
Increased blood volume Water and sodium retention and haemodilution (due to
increased RAAS activity)
Pre-eclampsia
- Methyldopa, labetalol and nifedipine
- RF: Primigravida, previous PET, CVD RF, APLS,
age>35, interpregnancy interval >10 years
- Rx: Aspirin, Calcium, management of RF
- Crisis: Eclampsia, HELLP, DIC, APO, Placenta
abruptio, PRES, ICH, Renal and hepatic failure, MAHA
Obesity in pregnancy High risk of adverse outcomes such as GDM, stillbirth, LGA,
NTD
Systolic Dysfunction
Rx:
- Diuretics, RAAS blockade and beta-blockers
- Digoxin, MRA
- Anticoagulation where EF<35%
- ICD
- ?LVAD, ?Transplant
Hypertension Methyldopa
Labetalol
Nifedipine
Hydralazine
Thiazide diuretics (limited data)
Immunosuppression Prednisone
Azathioprine
CNI
Rituximab (limited data)
Plasmapharesis
MTX-induced
Targeted therapy
Drug Target Tumour type Side Effects
Cetuximab, Anti-EGFR antibody CRC Acneiform rash,
panitumumab diarrhoea
Erlotinib/Gefitinib EGFR TKI - 1st Gen NSCLC Acneiform rash,
Afatinib (Erlo/Gef), 2nd Gen Can acquire diarrhoea
(Afat) resistance via T790
mutation (50-60%+
of patients)
Selpercatinib MET, RET
Crizotinib ROS1
Osimertinib EGFR TKI - 3rd NSCLC Acneiform rash,
Gen diarrhoea
Useful in
homologous
recombination
deficiency
Bevacizumab Anti-VEGF antibody Colon, Ovarian, Hypertension, bowel
Cervical, perforation,
Endometrial, proteinuria,
Glioblastoma, RCC, thrombosis, poor
NSCLC wound healing
Sorafenib, VEGF/multi TKI Renal cell ca, HCC HFS, CVD, LFT,
Lenvatinib, Hypothyroid, GI
Sunitinib, toxicity
Pazopanib, Axitinib
Alpelisib PI3K TKI Breast ca Rash,
hyperglycaemia,
N+V, diarrhoea
Dabrafenib, BRAF TKI Melanoma, CRC Dermatitis/skin
Vemurafenib, toxicity
Encorafenib
Trametinib MEK Melanoma Retinopathy
Palbociclib, CDK4/6 TKI Breast ca Neutropenia,
Ribociclib diarrhea,
transaminitis
Sonidegib, SHH gene Metastatic BCC Muscle spasm
vismodegib
Everolimus, mTOR inhibitors Clear cell RCC Proteinuria
Temsirolimus Poor wound healing
Deranged lipids
Less malignancy
risk however
Chemotherapy-Induced Nausea
Rx:
Durvalumab (Anti-PDL1) can be used (ATLANTIC Trial)
Platinum-based chemotherapy remains basis
If stage IV
- Median survival 4-5 months with best supportive care
- Immunotherapy is still integral
- Consider targetted mutation and PDL1 status
RF:
- IBD
- Previous radiation
- Obesity
- Diabetes/insulin resistance
- Meat consumption
HNPCC - MMR
Surveillance:
-ctDNA
-CEA (every 3 months for 3 years)
-CT-CAP annually for 3 years
Rx:
FOLFOX/FOLFOXIRI/FOLFIRI
Bevacizumab (Anti-VEGF) - proteinuria, HTN and thrombosis
Cetuximab (Anti-EGFR) - KRAS WT - can cause acneiform
rash
PARPi emerging
Rx:
Androgen deprivation therapy (ADT)
- Goserelin - CVS, Osteoporosis, low libido
Taxels for castrate-sensitive
Abiraterone/Enzalutamide for castrate-resistant
PARPi (Olaparib)
Bisphosphonates
RF:
Fair skin
UV Exposure
Dysplastic nevi
Age
Immunosuppression
VHL mutation
Rx:
1st line remains Sunitinib/Pazopanib
Can use immunotherapy, mTORi (Everolimus)
Rx:
Early stage - premenopausal (Tamoxifen) and postmenopausal
(Aromatase inhibitor)
Surgery + Taxane/Anthracycline
Axillary clearance as well
Rx:
Surgery (TAHBSO) + Carboplatin/paclitaxel
Debulking
PARPi
Rx:
Usually hysterectomy
Use of adjuvant RTx, of CTx (Carboplatin/Paclitaxel)
Hormonal therapy if ER/PR+
Immunotherapy for dMMR
Rx:
Adjuvant CTx/RTx - Cisplatin/Paclitaxel
Radical hysterectomy
Bevacizumab (Anti-VEGF)
Immunotherapy
Pathophysiology:
PKD1 - Chromosome 16
PKD2 - Chromosome 4
-> Point mutations
Extra-renal Manifestations:
- Aneurysms
- Cysts (Liver, Pancreas, Seminal Vesicle)
- Cardiac - MVP, AR
- Aortic dissection
- Colonic Diverticula
- Hernias
Criteria
- Positive family history AND
- 3 or more cysts total (15 to 39 y/o), 2 or more cysts in each kidney (40 to 59 y/o)
and at least 4 cysts in each kidney (60 y/o ans above)
- Negative MRI at age 18 almost always exclude PCKD
Management:
- BP and LIpid control
- Low Na and high fluid intake
GLOMERULONEPHRITIS
Nephrotic Syndromes
Definition/Causes Characteristics
Focal Primary Bx
segmental - Caused by a circulating - EM shows collapsed capillary loops
glomeruloscle permeability factor that is with hyaline entrapment and podoctye
Secondary
- Malignancy, SLE, HBV
Definition/Causes Characteristics
IgA nephropathy Etiology largely unknown Majority present with haematuria +/- flank pain
Characterised by mesangial +/- low grade fever
deposition of IgA - Small percentage present with RPGN
- Often accompanied by HTN
Most common cause of
primary GN Bx
- IF: prominent globular deposits of IgA
Some association with CLD, in the mesangium
Coeliac, HIV, monoclonal - EM: dense deposits primarily in the
gammopathy of renal mesangium
significance
Rx
- ACEI mainstay - BP control and
reduction of proteinuria
- Commence of proteinuria
>500mg/day
- Sodium restriction, SNAP lifestyle
changes
- Use immunosuppresive agents in
patients who remain high risk for ESKD
despite maximal supportive care (eg
proteinuria >1g/day)
- Can consider SGLT2i if eGFR >30
Lupus Nephritis Most LN presents within 6-36 Class IV LN most common and most severe
months of SLE Dx form of LN
- Low C3 and high dsDNA during active
Highest risk of LN early in disease
time course - >50% glomeruli affected
- Male, <33yo at Dx,
non-white Histology features of LN
- Glomerular depositis that stain for IgG
Six histological subclasses and contain deposits of
- Class I: minimal IgA/IgM/C3/C1q
mesangial LN - Glomerulare deposits seen in
- Class II: mesangial mesangium, subendothelial and
proliferative LN subepithelial locations
- Class III: Focal LN - Extraglomerular immune deposits with
- Class IV: diffuse LN TBM, interstitium and vessels
- Class V: Membranous
LN Class V - diffuse thickening of glomerular wall
- Class VI: Advanced
sclerosing LN Rx
- MMF or cyclophosphamide initially
- Can also use MMF + CNI
Supportive Rx
Rx
- Glucocorticoids + Rituximab
- If organ/life threatening disease use
GCs + Ritux +/- Cyclophosphamide
- After 3-6 months, reassess and
determine if suitable for maintenance
therapy - if yes, use either
ritux/aza/methotrexate
Anti-GBM GN Small vessel vasculitis affects Most present with RPGN, 20-60% also present
(Goodpasture’s) the capillary beds of the with alveolar haemorrhage
kidneys and lungs
Anti-GBM antibodies positive in serum or in
Directly pathogenic anti- kidney
GBM autoantibodies (non- Should also test for ANCA in all anti-GBM pos
collagenous domains of a3 patients
chain of type IV collagen)
Bx
Most often idiopathic but can - LM: Crescentic GN
follow lung or kidney injury - IF: pathognomonic linear deposition of
eg infection, inhalation of IgG along the glomerular capillaries and
hydrocarbons or other forms occasionally the distal tubules
of GN
Nephrolithiasis Yes No No
Treatment Alkali therapy with PO Much more difficult to Treat the underlying
bicarb (binds retained H+ treat, similar principles to cause if possible
ions to reduce acidosis) type 1 - Alkali therapy Fludrocortisone -
with PO bicarb caution though as can
If due to toxic agent - lead to fluid retention
may resolve on own once
culprit agent is ceased
If Fanconi - replace PO4
and VitD as well as alkali
therapy
Fanconi Syndrome
Feature of RTA type 2 (Proximal) - Hyperchloraemia NAGMA, hypokalemia and low HCO3
Dialysis
- Used to support kidneys for fluid removal and waste clearance
- Doesn’t perform active transport
- Based on Diffusion (utilising a concentration gradient) and Convection (utilising
hydrostatic pressure
- Diffusion: think HD and PD - good for clearing small molecules
- Convection: think haemofiltration - good for clearing larger molecules
- Indications
- Acute: oligoanuria, fluid overload/APO, metabolic acidosis, refractory
hyperkalaemia, uraemic encephalopathy, uraemic pericarditis
- Chronic: Fatigue, difficulty concentrating, loss of appetite, metallic taste,
itch
- Long term complications
- Mineral bone disorders - more common in CKD patients on dialysis,
reiterates importance of phosphate binders if needed
- Vascular calcification
- Calciphylaxis - causes blood clots, painful skin ulcers and potential for
serious infections secondary to accumulation of calcium in small blood
vessels of the fat and skin
Area dialysed Blood directly though arterial Abdominal wall through a dialysing
and venous access fluid
PD solutions consist of
sodium/calcium/magnesium/chloride
Glucose is the principle osmotic agent
Dialysis-related amyloidosis
- Due to long term
accumulation of b2-
microglobulin
- Doesnt really happen
anymore due to newer
high-flux dialysers
Haemodialysis Prescription
- Duration
- Frequency
- Blood flow rate
- Dialyzer
- Ultrafiltration rate
- Dialysate composition
- Dialysate temperature
- Anticoagulation
- Intradialytic products - erythropoietin, iron, blood transfusion, nutrition and
antibiotics
Deceased
- Similar criteria
- Outcomes not as good as living donor however still improved
compared to those who remain on dialysis
- Can only use a donor kidney from a deceased person after starting
dialysis
Contraindications Absolute
- Active infection
- Active malignancy (excluding non-melanoma skin cancers)
- Active substance abuse disorder
- Reversible kidney failure
- Uncontrolled psychiatric disease
- Documented active and ongoing treatment non-adherence
Relative
- Malnutrition
- Uncontrolled ANCA vasculitis
- Severe hyperparathyroidism -> may need subtotal parathyroidectomy
prior to transplant
- Primary oxalosis
- Systemic amyloidosis -> due to high mortality
Donor age and comorbidities not necessarily CI’s but important factors to
consider when selecting donor
Immunosuppression Induction
- Rabbit Antithymocyte globulin (rATG) or Basiliximab (anti-CD25
mab)
Maintenance
- Triple immunosuppression: antimetabolite + calcineurin inhibitor +
glucocorticoids
- Eg: Azathioprine/MMF + Cyclosporine/Tacrolimus + prednisolone
Infections
- Major cause of death following kidney transplant
- URTI/UTI most common
- Opportunistic infections eg CMV, BK virus, Listeria, Aspergillus,
Nocardia, PJP, HSV, EBV, TB, VZV
- Vaccinations crucial post transplant Mx -> vaccines indicated for
immunocompromised patients should be administered 3-6 months
post transplant
- Prophylaxis post transplant -> PJP
PTLD
- Secondary to outgrowth of EBV-pos B-cell proliferations in setting
of chronic T-cell immunosuppression
- Principal RF underlying development of a PTLD are the degree of
overall immunosuppression and the EBV serostatus of the patient
- Rx: if early can reduce immunosuppression, otherwise consider
Rituximab if CD20+ PTLD
Acute rejection
- Suspect when sCr rises >25% from baseline, worsening HTN,
proteinuria >1g/day, or plasma donor-derived cell-free DNA >1%
Malignancy
- Renal transplant recipients 3x more likely to develop cancers
- Skin cancer, PTLD, anogenital cancers, Kaposi sarcoma, RCC
BK nephropathy
- Mainstay of treatment is to reduce immunosuppression
Tone Up Down
Reflexes Up Down
Plantars Up Down
Clonus Yes No
Cerebral Cortex
Frontal lobe - Primary Motor Cortex
- Personality
- Anosmia
- Optic Nerve involvement (Foster-Kennedy Syndrome)
- Gait Apraxia
- Expressive Dysphasia (Broca)
- Primitive Reflexes (palmomental, snout etc)
Parietal lobe - Primary sensory cortex
- Gerstman syndrome (Acalculia, Agraphia, L-R
disorientation, finger agnosia)
- Spatial inattention
- Construction Apraxia
- Lower quadrantanopia
Temporal lobe - Primary auditory cortex
- Receptive Dysphasia (Wernicke)
- Memory loss
- Upper quadrantanopia
Occipital lobe - Homonymous hemianopia
- Anton’s syndrome (cortical blindness and confabulation)
- Alexia without agraphia
Diabetes management
Antiplatelet therapy:
- DAPT 3/52 then SAPT (CHANCE and POINT trials)
- Can be started as soon as CTB excludes haemorrhage or 24/24 after tPA+CTB
Thrombolysis (tPA)
- Choice of alteplase, tenecteplase and streptokinase
- Absolute contraindications: Extensive hypoattenuation on CT, suspicion of SAH,
current or previous ICH, intracranial neoplasms, severe head trauma last 3 months,
intracranial and intraspinal surgery, PC<100, INR>1.7, APTT>40, Clexane last
24/24, suspicion of current endocarditis, active GI/internal bleeding, aortic
dissection
Recanalisation:
- ICA, MCA M1, MCA M2, Basilar
- If eligible for thrombectomy and tPA, to give tPA still
- DAWN trial – thrombectomy from 6-24 hours using perfusion imaging
- DEFUSE trial - thrombectomy 6 to 16 hours using perfusion imaging
CEA/Stenting
Window summary:
1) tPA
- 0 – 4.5 hours – CTB -> Alteplase
- 4.5 – 9 hours – CTP/DWI-MRI to determine-> Alteplase
2) Thrombectomy (large vessel)
- 0 – 4.5 hours – tPA + thrombectomy
- 4.5 – 9 hours – if delay can tPA prior
- 9 -24 hours – CTA+CTP -> Thrombectomy
Treat etiology:
- AF
- PFO closure
- Hyperviscosity/hypercoagulable states/diseases
Pre-symptomatic stage:
- Constipation
- Anosmia
- REM SBD
- Mood changes
Symptomatic stage:
- Bradykinesia/Akinesia
- Rigidity
- Tremor (4-6 Hz)
- Supportive features: Rest tremor, L-DOPA response
and dyskinesia, olfactory loss, cardiac sympathetic
denervation on MIBG
Treatment:
- Levodopa
- Amantadine
- Dopamine agonist (pramipexole, topical rotigotine,
cabergoline, bromocriptine)
- Monoamine Oxidase Inhibitors (MAO-B)
- Symptom management (Drooling, REM SBD,
Hallucinations, Dementia, Constipation)
- Advanced – DBS, Apomorphine infusion,
Intraduodenal levodopa, sub-thalamotomy (under
USS)
Treatment: Anticholinesterases
Progressive Supranuclear Tauopathy
Palsy (PSP)
Postural instability, dementia
Vertical gaze palsy (downgaze)
Minimal tremor
Pseudobulbar palsy
Epilepsy
Classification:
- Generalized
- Focal (Motor, Awareness)
Causes:
- Genetic
- Structural
- Immune
- Metabolic
- Idiopathic
Syndromes:
- Juvenile Absence Epilepsy
- Juvenile Myoclonic Epilepsy
- Mesial temporal lobe epilepsy with hippocampal sclerosis
Medications
- Focal – Carbamazepine (Check HLAB1502 and HLA3101), Lamotrigine,
Levetiracetam, Gabapentin, Valproate, Phenytoin
- Generalized – Valproate, Levetiracetam, Lamotrigine (Child bearing age),
Ethosuximide (Absence)
- Best to combine different classes (Na channel, Ca channel etc) ie Lamotrigine and
Valproate
Drug resistant Epilepsy – consider surgery
Complications:
- Osteoporosis, osteopenia
- SUDEP
- Psychosis
- Status Epilepticus (Convulsive and Non-convulsive, Refractory)
Obstetrics:
- Consider interaction with contraception
- Infertility risk
- Teratogenic properties of AEDs
Antibodies
Anti-GM1 Multifocal motor neuropathy with conduction block
Anti- GQ1B Miller-Fisher syndrome
Anti-AChR Ab Myasthenia Gravis
Anti-MuSK Myasthenia Gravis (more common in seronegative MG,
usually no ocular involvement)
Anti-LRP4 Myasthenia Gravis (relatively mild)
Anti-VGCC Lambert-Eaton Myasthenic Syndrome (LEMS)
Anti-Hu Limbic encephalitis (SCLC)
Anti-Yo Cerebellar degeneration (Breast ca)
Anti-Ri Opsoclonus-Myoclonus (SCLC)
Anti-Ta/Ma Rhomboencephalitis (Testicular ca)
Anti-Amphiphysin, CRMP5 Paraneoplastic myelitis
Anti-GAD Stiff-Person Syndrome
Anti-VGKC (LGI1, Autoimmune encephalitis
CASPR2)
Anti-KELCH-11 Cerebellar syndrome (Testicular seminoma)
Anti-NMDA Autoimmune encephalitis (ovarian ca)
Anti-Aquaporin 4 NMOSD
Anti-MOG NMOSD
Anti-MAG Paraproteinaemia-associated neuropathy
Neuroimmunology
MS NMOSD
MAb - Natalizumab,
Alemtuzumab, Ocrelizumab,
Rituximab
Nadir 2 weeks
>4 weeks - CIDP
Syndromes:
- Limbic Encephalitis - Psychiatric manifestations ie temporal lobe involvement
- Rhomboencephalitis - cranial nerve or brainstem signs
- Cerebellitis
Causes:
- Infective - Viral (HSV, VZV, Enterovirus, Flavivirus, CMV, EBV, HHV6, HIV),
Bacterial (TB, Syphilis, Listeria), Fungal (Cryptococcal)
- Autoimmune - NMDA, LGI1, CASPR2, KELCH-11, CRMP5/Ampiphysin
- Paraneoplastic - Anti-Hu, Yo, Ri,Ta/Ma
https://www.health.wa.gov.au/~/media/Files/Corporate/general-documents/Palliative/opioid-chart.pdf
Atropine Organophosphates
Glucagon Beta-blockers
Digibind Digoxin
Flumazenil Benzodiazepines
Hydroxocobalamin Cyanide
NAC Paracetamol
Naloxone Opioids
Culprits Features
Anticholinergic Antihistamines, TCAs, first “Hot, dry, mad, blind and red”
syndrome generation antipsychotics
Phase 1: evaluate toxicity, study drug disposition (pharmacokinetics), determine dose for
phase 2
Phase 4: Post registration, confirm results from fast-track approval trials, additional post-
marketing safety assessment
Source: https://rc.rcjournal.com/content/62/11/1492
Source: https://erj.ersjournals.com/content/26/5/948.figures-only
Classification:
- Intermittent - symptoms/SABA<2/week
- Mild persistent - symptoms/SABA>2/week
- Moderate persistent - Daily symptoms, mildly reduced FEV1
- Severe persistent - Abnormal FEV1 <60% with daily symptoms
ILD Types:
- ILD of known cause - dusts (asbestosis, silicosis), CTD,
radiation-induced, drug-induced
- Granulomatous (Sarcoidosis)
- Idiopathic - IPF, COP,AIP, RB-ILD, Desquamative, NSIP
- Others - Lymphangioleiomyomatosis, Pulmonary Langerhans
cell Histiocytosis
Sarcoidosis
- 1:10000
- Th1 inflammation
- DDx: TB, Lymphoma, other ILD
- Generally require tissue diagnosis
- Bronch - elevated CD4:CD8 ratio, endobronchial/transbronchial
biopsy, EBUS
- Extrapulmonary involvement: Ocular, Calcium, Cardiac, CNS
- Indications for treatment - Progressive pulmonary disease,
cardiac, neurological, eye disease, symptomatic hypercalcemia
Medications Details
Omalizumab Anti-IgE
Indication: Asthma
Dupilumab Anti-IL-4/IL-13
Indication: Asthma
SE: Photosensitivity
Nintedanib TKI
Indication: ILD, Scleroderma-ILD
Obstructive Sleep Apnea AHI >5/hr with symptoms or >15 +/- symptoms
Daytime somnolence
Rx:
Endothelin antagonist - Bosentan
PDE5inh - Sildenafil
Prostacyclin analogue - Epoprostenol
Soluble guanylate cyclase pathway - Riociguat
Combination therapy - Ambrisentan + Tadalafil
Type 1 Idiopathic
Hereditary
Drug and toxin induced
Associated with CTD, HIV, Portal HTN, Congenital Heart
Disease, Schistosomiasis
Persistent pHTN in newborn
Responds to CCB
Associated with BMPR2 gene
Type 2 HFrEF
HFpEF
Valvular HD
Other cardiomyopathies
Type 4 CTEPH
Antibodies Disease
Sjogren’s,
SLE
Anti-Ro (SSA)
Congenital lupus with complete heart block
Subacute cutaneous lupus
Anti-La (SSB) Sjogren’s
Anti-HMG CoA Reductase Statin-induced necrotizing myositis
Anti-SRP Necrotizing myositis
Anti- Ro52 ILD in CTD, especially myositis
Anti-RNA polymerase III Renal crisis in systemic sclerosis
Microscopic polyangiitis (70%), Eosinophilic
pANCA
granulomatosis with polyangiitis (eGPA) (30%)
cANCA Granulomatosis with polyangiitis (GPA)
Rheumatoid arthritis (RF can be found in many others
RF, Anti-CCP
including SLE, Sjogren’s)
Anti-Histone Drug-induced Lupus
Features RA PsA
Symmetrical arthritis ++ -
RF ++ +/-
Dactylitis - +
DIP involved - +
Source: Dr Andrew Foote 2010
Systemic Sclerosis
Skin changes Distal to elbows and knees, Proximal and distal to knees
can involve face and neck and elbows
RA Periarticular erosions
Juxta-articular osteopenia
Joint space narrowing
Sparing of DIPs
Scleroderma Calcinosis
Osteolysis (destruction of bone)
No other characteristic features of other peripheral arthritis
Features:
- Constitutional symptoms (fever, malaise, anorexia,
weight loss)
- Cranial symptoms (headache, jaw claudication, scalp
tenderness)
- Extra-cranial features (any large vessel)
Ocular complications:
- Anterior ischaemic optic neuropathy, CRAO,
Posterior circulation involvement
Features:
Constitutional symptoms
Carotidynia
Arterial stenosis/occlusion, absent pulses
Discordant BP, bruits
Aortic dissection, aortic root dilatation, aortic valve
regurgitation
Features:
Constitutional symptoms
Skin involvement - purpura, panniculitis, livedo, necrotizing
vasculitis in dermis
Renal - ischemia, infarcts
Neuro - Mononeuritis multiplex, neuropathy
GI - mesenteric angina, weight loss, bowel perforation
Myopathy
Rx:
Induction - Cyclophosphomide, Rituximab, Avacopan, ?
PLEX (If mild - MTX, MMF)
Maintenance - Rituximab, Mepolizumab (eGPA), MTX,
MMF, AZA
Features:
More common to have ENT involvement - crusting, sinusitis,
hearing loss, saddle nose
Pulmonary(15%)- Subglottic stenosis, airway stenosis
Retro-orbital pseudotumour
Features:
Preceded by URTI
Features:
Purpura
Arthralgia/arthritis
GI (Abdo pain, nausea, GI haemorrhage)
Renal (Haematuria, proteinuria)
Malignancy associated
Other system involved: Cardiac, Pulmonary, GI
Myofibre necrosis
Overlap myositis Associated with other CTD - SLE, RA, SSc, Sjogren’s
CD8 predominent
Endomysial involvement
Inclusion Body Myositis Quadriceps (Knee ext), Finger flexors and ankle dorsiflexors
(IBM) Neck, facial and bulbar involvement possible
No treatment
Ab: Anti-5NT1A (<50%)
Mx:
- Non-pharmaco – Reduce triggers (Stress, UV, sulfa), vit D, cardiovascular risk
modification, vaccination
- Pharmaco – First line therapy – HCQ
- Minor (HCQ, NSAIDs, low dose steroids, Belimumab), Major (Steroids, AZA,
MTX, LEF, CYC, CsA, Tac, MMF, Rituximab)
- Acute disease ie GN – pulse steroids + MMF/CYC. Can trial CNI/Ritux.
Pregnancy contraindications: Severe pHTN and restrictive lung disease, advanced CKD
and HF, previous HELLP/Pre-eclampsia despite therapy, stroke and severe disease flare in
last 6 months
Monitor: FBC
Hydroxychloroquine Used for SLE as the basis of treatment, but adjunct for RA
Teratogenic
Sensitivity = a / a+c
= a (true positive) / a+c (true positive + false negative)
= Probability of being tested positive when disease is present.
Specificity = d / b+d
= d (true negative) / b+d (true negative + false positive)
= Probability of being test negative when disease absent.
Positive Predictive Value (PPV) = It is the percentage of patients with a positive test who
actually have the disease.
PPV: = a / a+b
= a (true positive) / a+b (true positive + false positive)
= Probability (patient having disease when test is positive)
Negative Predictive Value (NPV) = It is the percentage of patients with a negative test
who do not have the disease
NPV: = d / c+d
= d (true negative) / c+d (false negative + true negative)
= Probability (patient not having disease when test is negative)
Absolute risk (AR) = no of events in treated or control group / number of people in that
group
Absolute risk reduction (ARR) = ARc-ARt
Relative risk (RR) = ARt/ARc = [a/(a+b)]/[c/(c+d)]
RRR = 1-RR or ARc-ARt/ARc
NNT = 1/ARR
NNH = 1/(ARt-ARc)
OR = (a/b)/(c/d)
HR = risk of outcome in exposed group / risk of outcome in non-exposed group
● calculation: case-control studies yield the odds ratio. An odds ratio is the ratio of
the odds of an exposure in the case group to the odds of an exposure in the control
group.
Randomised Control trial - is a trial in which subjects are randomly assigned to one of
two groups: one (the experimental group) receiving the intervention that is being tested,
and the other (the comparison group or control) receiving an alternative (conventional)
treatment. The two groups are then followed up to see if there are any differences between
them in outcome
Prospective Cohort Study - A research study that follows over time groups of individuals
who are alike in many ways but differ by a certain characteristic(for example, female
nurses who smoke and those who do not smoke) and compares them for a particular
outcome (such as lung cancer)
Case Series - group of case reports involving patients who were given similar treatment
Ecological study - an observational study defined by the level at which data are analysed,
namely at the population or group level, rather than individual level. Ecological studies are
often used to measure prevalence and incidence of disease, particularly when disease is
rare.