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Full First Year Biochemistry - For Medical Student - MedNotes Ebook 2
Full First Year Biochemistry - For Medical Student - MedNotes Ebook 2
Full First Year Biochemistry - For Medical Student - MedNotes Ebook 2
200 PAGES
MedN0tes
WWW.MEDNOTES.IN
Table of Contents
Contents Page
.
g. Protein 03
2-
Lipid 37
3.
Carbohydrates 55
4 .
Metabolism 66
. .
aaan.ep.io , ,
6. Nutrition 127
7.
Hormones 1-66
In the stomach, hydrochloric acid is secreted. It makes the pH optimum for the action of pepsin and also
activates pepsin. The acid also denatures the proteins.
Rennin
Rennin otherwise called Chymosin, is active in infants and is involved in the curdling of milk. It is absent
in adults. Milk protein, casein is converted to paracasein by the action of rennin. This denatured protein
is easily digested further by pepsin.
Pepsin
It is secreted by the chief cells of stomach as inactive pepsinogen. The conversion of pepsinogen to
pepsin is brought about by removal of 44 amino acids from the N-terminal end, by the hydrochloric
acid. The optimum pH for activity of pepsin is around 2. Pepsin is an endopeptidase, Pepsin catalyses
hydrolysis of the bonds formed by carboxyl groups of Phe, Tyr, Trp and Met. By the action of pepsin,
proteins are broken into proteoses and peptones.
Trypsin
Acute pancreatitis: Premature activation of trypsinogen inside the pancreas itself, will result in the
auto-digestion of pancreatic cells. The result is acute pancreatitis. It is a life-threatening condition.
Chymotrypsin
Trypsin will act on chymotrypsinogen, in such a manner that A, B and C peptides are formed. These 3
segments are approximated, so that the active site is formed. Thus selective proteolysis produces the
catalytic site.
Carboxypeptidases
Trypsin and chymotrypsin degrade the proteins into small peptides; these are further hydrolysed into
dipeptides and tripeptides by carboxypeptidases present in the pancreatic juice. The
procarboxypeptidase is activated by trypsin. They are metalloenzymes requiring zinc.
Food Allergy
3. Histidine also undergoes non-oxidative deamination to form urocanic acid; catalysed by histidase.
Fine Regulation :
The major regulatory step is catalyzed by CPS-I where the positive
effector is N-acetyl glutamate (NAG). It is formed from glutamate
and acetyl CoA . Arginine is an activator of NAG synthase.
Amino Acids : Structure and Properties (Vasudevan)
Thursday, 21 November 2019 6:03 PM
21. Lipids & its Physiological Significance
Sunday, 22 September 2019 5:54 PM
13. Cholesterol (Vasudevan)
Thursday, 17 October 2019 9:14 PM
Cholesterol regulates the expression of HMG CoA reductase gene
and LDLR (LDL receptor) gene. A specific recognition sequence known as the
sterol regulatory element (SRE) is present in DNA. SRE binding by sterol
regulatory element binding protein (SREBP) is essential for the transcription of
these genes. When cholesterol levels are sufficiently high, the SREBP remains
as an inactive precursor. It binds and activates an SREBP cleavage activator
protein (SCAP), which is an intracellular cholesterol sensor. When cholesterol
is less, SCAP escorts SREBP to Golgi bodies. Two golgi proteases (S1P and S2P)
sequentially cleave the SREBP to a protein, which activates the transcription
of HMGCoA reductase gene by binding to SRE
Plasma
lipids
• Total
plasma lipid cis 400
600mg 1dL
-
•
About 40% = cholesterol
30% =
phospholipids
20% =
triglycerides
insoluble in water
•
Lipids are ,
thus complexed with Protein .
q
( apo
-
Lp)
Classification contain
ca ,
any , omicrons Apo protein B 48
-
- -
.
5
major types : -
(
b, VLDL = B -
100
C) I D L
(
(d) L D L = B -
100
(
e) HD L =
Apo
-
fatty are
loosely thus not
included in
lipoprotein .
ca , Chylomicnns
Synthesis
.
chylo microns are
formed in intestinal mucosal cells .
. Rich in
triglyceride
and apo A
only
contain 48
•
At
first they Apo B - -
during transport .
Metabolism
•
Main sites are
Adipose tissue and skeletal muscle .
• The
enzyme Lpl ( Lipoprotein lipase ) Only on
adipose tissue ,
Apoc -
I .
•
Lpl hydrolyses triglycerides present in chelomicrons into
acids &
fatty glycerol
-
Function
to adipose tissue (
for storage ) and to muscle / heart
(
for energy
need )
b
( ,
Y
LIL
synthesis
•
• -
100
Metabolism
•
Apo CII activates Lpl which liberates fatty acids that
are taken up by Adipose tissue and muscle .
°
Remnant g v LDL → I DL
ten cholesterol
/
↳ has TAG & more .
Loses more
triglyceride and
converted in LDL
function =
VLDL
endogenous from liver to peripheral tissues
°
carries TAG .
peripheral .
•
Most g LDL ins derived from VLDL
Metabolism
B- to them →
→ -
②⑥
Coated
Clathrin Lysosome LDL
coated pits
reside
digested
cholesterol c) . a .
deposited
Function
⑨
About 75% plasma cholesterol iis
incorporated into
LDL
particles .
•
Three major fates :
Clinical
lol Toncentrateon blood has
• in
positive correlation with
cardiovascular disease .
o
LDL -s Eaten by -s Deposited in sub → Atheroma tous
endothelial
Macrophages
space
plaque
k
t
( Ham cells )
Atherosclerosis
Thus Bad cholesterol A
LDL = .
Thrombosis
•
(d)
High density Lipoprotein :
apo protein
in
• The main HDL is
Apo A -
I
Metabolism
-
•
The intestinal cells synthesize components g HDL and
release in blood .
• The
free cholesterol denied from peripheral tissue cells
are
taken up by HDL .
cholesterol
o
Apo A I -
•
The KAT binds to HDL disk ;
lecithin
Lecithin
gn liver specific
yso
/
.
,
binds
receptor S R -
Bt
to Apo A
-
I present
~ On HD L
cholesterol ester
✓
-
cholesterol .
9 up
mediated
cells by apo A I
receptor mechanism
-
Function
•
HDL in the main
transport form g cholesterol from peripheral
tissue g liver which in later excreted
,
through bile .
body in bile
route cholesterol from
• The
only excretory g .
•
Excretion g cholesterol needs prior esterification with Pu FA .
Po Pu FA in anti a theme
genic
.
Clinical
cholesterol
•
HDL is
good as it or an
hoathenogenic .
• HD L L 35
my 1dL increases risk while > 60
mg Idi protects
diseases
the
person from coronary .
sent
1. General Chemistry
Friday, 15 November 2019 10:06 PM
A glycosidic bond or glycosidic linkage is a type of covalent
bond that joins a carbohydrate (sugar) molecule to another
group, which may or may not be another carbohydrate.
1,4-α-glycosidic and 1,6-glycosidic linkages in
the glycogen oligomer
Cellulose is the chief constituent of plant cell walls. It is insoluble and consists of β-D-
glucopyranose units linked by β1 → 4 bonds to form long, straight chains strengthened
by cross-linking hydrogen bonds. Mammals lack any enzyme that hydrolyzes the β1 →
4 bonds, and so cannot digest cellulose. It is the major component of dietary fiber.
Microorganisms in the gut of ruminants and other herbivores can hydrolyze the
linkage and ferment the products to short-chain fatty acids as a major energy source.
There is some bacterial metabolism of cellulose in the human colon.
→
Carbohydrates are
present as
comp Len polysaccharides and to
some extent Disaccharides ( Gm diets
starts
•
Digestion in Mouth
by salivary 9-
Amylase .
•
gm stomach the process a digestion g carbohydrates shops
due acidic
to
highly environment .
•
In intestine ,
the cells secrete sucrase ,
Maltase ,
another
Amylase available
In
pancreatic juice a is
° -
which
hydrolyze the a. 1,4 .
glycosidic linkages randomly .
Clinical :
lactase
lactose Gm tolerance :
hydrolyzes lactose to
glucose e
present of
enterocytes -
g
.
, ,
• Condition can be
congenital or
acquired .
it contains lactobacilli
•
Card in an
effective treatment as
Absorbafion :
•
Rate max Galactose
moderate Glucose
minimum Fructose .
Absorb lion g Glucose :
•
Glucose can be absorbed through its specific transporter .
Glatt
. Some transmembrane proteins are
to Glu 77
•
Glucose can also be transported as co
transport from
-
•
gn Intestine ,
it is Salut -
I
gn
kidney it in salat 2
-
Clinical
Rehydration Fluid
-
.
Common treatment for diarrhea is Oral
. It contains Glucose and Nat .
•
Presence g Nat helps transporting glucose via co -
transport
be maintained
• That's how Nat
in diarrhea .
and Glucose can in
body
Glucose transporters :
Glee T t -
RBC ,
brain . Kidney ,
Retina ,
Placenta
Glee T z
-
Sens al surface g gmteslinal Cells ,
liver ,
B cells Paneer .
Glut 4 -
skeletal ,
heart muscles ,
adipose tissue
Glut 5 - Small intestine ,
testis ,
sperms ,
kidney .
Glut 7 -
liner Endoplasmic Reticulum
S Glatt -
Intestine
sake I 2 -
kidney .
reduced resistance
.
leading to insulin in muscles
Fat cells .
&
°
Glut 5 is Fructose transporter .
under
② Kl hat in the major catabolic
pathway y
Glucose
Pathway :
Glucose
④e Eat:
Glu ! se - 6 -
phosphate
=
( Phospho hexose
isomer those
yn
-
G -
phosphate
Eihl . Bisphosphate
-
( Aldolase)
( Glyceraldehyde
Glycentaldehyde f
NAD #
-
3 -
phosphate t DHAP
43 p (
pi
.it/-mutmeiz.pthosphoglycerate
tht
3- phosphate > NA DH
dehydrogenase) 1.3 is
phosphog ly cerate
to
only equal 2 ATP .
Glucose Lactate
•
Egm ; + 2 Pit 2 ADP → 2 + 2 ATP
Biological significance :
Actively contracting muscles
-
that
rapidly consume ATP also
can
regenerate ATP
entirely by Anaerobic
glycolysis .
③ Describe process g glycolysis .
Explain how
many
molecules
conditions .
g ATP are
formed in anaerobic & aerobic
Emb den
• Also known as
Meyerhof Parmar ( EMP ) Pathway -
-
•
It is the
only pathway that in taking place in the all
cells
g body the .
Glucose
Is Molecules ATP
formed :
/
phosphate
-
g
is:P'd!
""
Fructose
-
in
G
phosphate
In Anaerobic Condo
- -
④ED÷c±÷
needs
.
.
F- e -
1,6 B- is phosphate
caidolase)
Sete ps Enzyme Source No ATP
¥¥÷÷÷÷÷÷÷÷÷÷÷÷
f .
D
" """
: Hexone none
-
if /
t .
-
i
.
⇐now ? Pt-
Phots
hfspghog 't cerate 6 1,3 bis
phospho
cerate
-
Aep 1×2=2
phenol pyruvate
l¥± g ly kinase
pyntavate C. ¥7 .
Imari
lactate
,
g
pyruvate kinase ATP
-1×2=2
Total 4 -
2=20
In Aerobic fond :
step No
Enzyme Source .
7 ETP
I Hexokinase -
-
3
Phosphofnechokinase I
-
-
5
Glyceraldehyde -
3 -
NADH 2-5×2=5
phosphate dehydrogenase
bisphosphoglyeerale ATP 1×2=2
6 1,3 -
kinase
kinase
Pyruvate ATP 1×2=2
9
-
Total =
g -
2
-
-
⑦
④ klhat are
factors affecting Glycolysis ?
the
key enzymes
:
( d) H exo kinase
(b)
Phospho fnecho kinase
( C)
Pyruvate kinase .
Hexo kinase at
(a) :
High affinity for glucose thus will act even
concentrations
low glucose .
•
Glucose -
G -
phosphate has a
feedback inhibitory effect
on
enzyme
-
glycolysis .
I
• Glucose tire )
→
feedback to Hexokinase
(b)
Phospho Fratto kinase : ( PFK ) in the most important
rate -
•
ATP and citrate are most important inhibitors .
•
AMP ,
ADP are
promoters ( activators .
fructose
• -
2,6 ,
bisphosphate (F 2,6 -
BP ) increases the
activity g PFK lphosphofneehokinase-TE.IE
oakn.fi?ghec9on/.=. '
.
-2.6 BP
ai:-O I;
Pyruvate
.
kinase
Regulatory
(c)
a
:
enzyme Insulin
Glucagon
for Glycolysis .
97nF;ni¥
°
'
¥6 P
( CFA - CoA * IF-2.co/3PT
°
T
Pof -01Acetyl
AT WA most
imp
④ Regulator
Glucagon
-1 Pyruvate kinase
←
T④ Insulin
fructose
I -96 BP
1. 3 bis
phospho glycerite → 3 -
phospho glycerite ; is
bypassed .
phospho glycerite It
"2,3,B
"
And I , 3 bis
3 Iphosphoglycerale
significance :
Under
•
circulation
o
B Ph 9 in
fetal
shunt No aerated
pathway Paige
A >
•
In this ,
.
It in the
process by which
glucose molecules are
precursors ;
which
include lactate acids
,
Glycogenic amino ,
glycerol part
and
y fat pro pion yl CoA from fatty acid chain -
site
Occurs in liver and to lesser extent Renal cortex
.
mainly
mitochondrial and
party cytoplasmic
in
•
Pathway partly .
Key enzymes :
(
Pyruvate Carboxylase
h
phosphor tape .
•
This
pathway is not Reversal g glycolysis .
circumvented
• The irreversible
stages
which
g glycolysis are
by are also
enzymes for this .
Significance :
blood
.
only
liver
replenish
can
sugar through glycogen! .
.
because
glucose
-
6 -
liver -
During .
gluconeogenesis
glucose -
• The stored
glycogen at depleted within iz -
is hrs
g
fasting .
starvation A and
• On
prolonged .
gluconeogenesis
catabolism substrate
protein provides .
Lactate - Glucose
( Glu neo
genesis
"
Regulation :
ca )
Pyruvate carboxylase Acetyl CoA wi activator -
an
g pyruvate carboxylase
.
bisphosphate an
inhibitors .
Enhancer
(c ) ATP 7 Gluconeogenesis .
Glucocorticoids A
( d,
Hormonal
Glucagon 2
Gluconeogenesis
Insulin inhibits
Gluconeogenesis .
t -
group
.
•
The x -
glycosidic unit
1,4
linkages are
hydrolysed
time
and
thus
removing glucose one at a .
It not attack 46
.
can
linkage .
°
a'
gem
G'
17,
+ Glucose -
t -
phosphate .
one
•
Converts Glucose -
I -
phosphate → Glucose -
6 -
phosphate
•
and
free glucose is released into bloodstream .
°
Gm muscles .
phosphatase
glucoseand used as is absent Gap will -
G -
Glycogen synthesis
• gt is not reversal
g glycogen breakdown -
•
The steps are :
( A1 Activation
-
9 Glucose : -
glucose
phosphate UDP-glucose Ppi
pp
ut
- -
+
Glu -
t -
u> p
Pyro phosphorylase
( uridine
triphosphate)
Primer
(B ) Glycogensynth :
Glycogen alyaogenin
-
those
Glycogen primer (n )
Glycogen (n ti )
+ u D P -
glucose +
VIP
(c)
Branching me
add units
•
The
glycogen synthase can
glucose only in
in needed to create
a -
1,4 linkage branching enzyme
.
A
the a- 1,6
linkages
.
chain
•
When in y I -
12
glucose molecules the ,
branching
residues
enzyme
will
transfer blocky a 6 -
s
glucose
to
form t -
linkage
6 .
⑧ Explain and its
HMP shunt
Pathway significance .
. oentose
phosphate pathway
°
Dickens -
Honecker Pathway
. shunt
Pathway
•
Phospho gluconate Oxidative
Pathway
•
In
glycolysis ,
there are
few
bi
phosphate intermediates .
but in this
pathway there are
only monophosphate .
enter this
About 10%
glucose molecules
pathway
.
•
,
•
In liver & RBC it in 30%
oxidative
phosphate oxidised
°
and
with
generation g molecules 2 g NADPH ,
one molecule
During oxidative
Non the
pentose -
converted to intermediates g
glycolysis .
Glucose -
6 -
phosphate
Glucose
f ( alum kinase )
Dehydrogenase ④ ②
Gluphophak/ ¥16 -
phospho
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phosp luwnale
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is ace P
dehydrogenase deficiency
dis induced
Dng hemolytic anemia
⑨ Explain Cosi
cycle ? / lactic Acid Cycle .
It in the
process
in which
glucose ai converted to
lactate in muscle ; and in liver this lactate in
converted into
re -
glucose .
•
Muscle cramps in due to lactate accumulation .
•
lactic acid from muscle diffuses into blood .
•
lactate reaches Liver and converted to Pyne rate .
thus it is channeled to
Gluconeogenesis .
,
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Glucose
if g-
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•
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Metabolism g
fatty Acid
① short note on
Digestion g lipids and its absorb lion -
The
major dietary lipids TAG ( triglycerides ) cholesterol
→
are ,
and
phospholipids .
STOIA CH
• The
lingual lipase has optimum
pH - 2-5 -
5 ,
so it remains
. The
gastric lipase ni ace 'd stable with optimum pH 5-4 =
,
Gaskin
by .
Upto 30%
digesting TAG occurs in stomach .
INTESTINES
•
The
lipids dispersed into smaller droplets ; surface
are
This in
favoured Cas Bile salts
process by (b) Peristalsis
(c) Phospholipids .
°
Bile salts ( sodium glycocho late and sodium Launch date )
lower surface tension .
Pancreatic
°
Enzymes cat
Lipase
b
( , cholesterol esterase
( c)
Phospholipase Az
Pancreatic
lipase hydrolyses the TAG and
forms
•
•
cholesterol ester
may
be hydrolysed to free cholesterol and
fatty au 'd .
•
The action g phospholipase Az produces lyso phospholipid
and a
fatty acid .
Absorb lion 9 Lipids
c) absorbed to
long fatty acids ( 14
lymph blood
> are not
•
.
Products n
• Bile salt micelle t
digestion namely 2 mono
acyl -
°
Micelle
formation essential for absorb lion in g
are re -
•
Free glycerol absorbed from intestinal lumen
bloodstream
directly enter .
into .
•
TheTAG cholesterol ester &
,
molecules phospholipid along
with Apo proteins 1348 and apo A are incorporated into
duct
chylo microns The I act eats
chyle
thoracic
→ . →
systemic
circulation
Short chain fatty acids ( ( seen
.
bloodstream
They can
directly enter ,
and then via
and
portal vein to liver ,
immediately utilized Jor
energy .
o SCF As on
.
( 11 Minor digestion
Major digestion clinical
to
(2)
:
(3)
steatorrhea
( 41 Formation g
micelles on ,
daily is
excretion og fat in
feces
ii. :i ::÷÷:i::m ::÷:÷:÷÷÷ .
ch 'll omicrons
(7)
Assembly g ab ,
Defectorsorb lion :
be
-
Mono
glyceride
/
taken Adipose
They by I
•
are
up due to
be
tissue skeletal muscle & liar .
May
: se:L! .de:1?:aeg7hfiIsgcn
,
to
are
transported Adipose ciii , obstruction g Bile duct
tissue .
② Explain p oxidation -
og Fatty Acid .
at B -
carbon atom .
doin clinical
mithridate
em
for
-
.
Medium chain e short chain
← acids do not
R
"
"
iii. c.E.co
"
. .
fatty require
carnitine this oxide's ed
.
-
c -
c -
c -
o
lfatyacidcoAEfattyAyewai@qampotah.m
.mn?nthetme easily
'
① Yaa .sn
Ach
Carnitine
deficiency
oxidation
ii. .gg .
-
I in
reported
" " t
d¥YldIgAe\¥aonszkP①
of 16 c
Fatty Acid
-
TACIT ) D2
AIyetofi.IT
none
> Trans
. s so R -
ee -
E -
CoA -
( Enn
!¥!aYAme 1+420
7 FA Dha X l 5 105
step ②
-
•
°
7 NADU X 2 -
5
l
,
di
(/
Further cycles [ slept Ii "
] R C c CoA su v
G 3>4
-
Ross
-
-
'
Auriga
'
heda's
Thus in
resulting
tis
①
-
p genip
ihp.FM#ni:eg.g ,÷÷:
total '
Is:{ ii.
"
. d
③ episodes a
•
Efficiency g p oxidation ca [P keto
fatty aye CoA ]
hypoglycemia
-
wa .sn
-
on - -
,
in about 33%
[ Acetyl -
WA ]
↳ TCA
cycle lkneb cycle E ?I¥¥n ? III Cio ATP ]
③ Short note g
Metabolism g ketone bodies .
•
Carbohydrates are essential for metabolism og
fat .
kehogenes.is
. Aceto acetate in
primary body while beta
the
hydroxy ketone
butyrate and acetone ketone bodies
secondary are .
=
.
Acetyl CoA t
Acetyl WA
keto lysis
[Aceto acetyl
synthase]
wa ① /
it '
CoA -
SH
o ketone bodies are
formed
Aceto
in liver but they are
acetyl wa
utilised tissues
by extra
hepatic
Khao
WA
[ HMG AA
+
Acetyl
② like Renal or ten ,
heart ,
synthase ] ~
, w A skeletal muscle brain etc
,
-
as
fuel except
Acetone
( No
" liver
/ itai : Dehydrogenase] RBC
&
"
Tex, ④ [
.
we '
B
hydroxy butyrate Aceto acetate
sycwciyyl
-
r +
.
! acetyl
( Thi
op horas e)
:/
Ace wit
ketosis
-
i ::::÷::÷: :: :.:c:÷÷:c
there will be accumulation the ketone to
.. :¥÷
produce energy
.
.
g
.
bodies in blood .
.
All these three together →
Ketosis -
Causes
As Insulin I Accelerated
lipolysis acids
faythg
→ →
More
More
ketone bodies
bi starvation starvation increased rate to
( -
gn .
the g lipolysis is
salient
features g ketosis
in Metabolic acidosis
a Reduced buffer
131 Kuss maul 's
respiration
( 41 smell g Acetone
( 51 Osmotic diuresis
(6) Nat Loss
(71 Dehydration
is , coma -
Dehydration & Acidosis → Lethal
effect 9 Ketosis .
•
Detection Roth era 's Test .
Treatment
• Administration g 9 insulin e Glucose
Administration T Hoos
-
[ App Available ]
Glucose -
6 -
phosphate
Glucose Dehydrogenase
f ( alum kinase )
T
④ ② ⑥
Gtp ①6 -
A gluwnolachonefl
→
/
DPT
£ NADY NADPH hat n+ CMA
NADPH
Fructose 6 P f v
gluconate
- -
keto phospho
③ 3 -6 -
Ribtuhise@5.p
v
n
F 1.6 Be
/ i can take part in
ycgsomerase.lt#merqesgt3Bpcr(z
DH AP GASP 12 )
I e
I lysis )
-
-
-
-
-
-
Pl Xylulose
¥ramketolase
> 5 P
- Ribose 5 -
- -
)
-
t
'
)
@
f ZADP -
(
ZATP t ↳
ta
'
Sedulohephosel
ftp..TO#.t-t-pI@osphaT2-PGC2
pg
s
z
it
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t
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d
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to
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P Trans keholase )
- i -
EX
ffmech.se#
- ,
pas
- -
-
- - -
.
Lafoy
-
-
-
-
-
-
( alycoeyg.IT
-
NA PM Ribose -
5 - P
=
=
Reducing agent
( is
cm DNA syn
(2) Fatty Acid synthesis
e) RNA
"
(D Neurotransmitter syn
(G ) CoA "
C -
C - di
- O
-
= ← c. c. .
-
CoA -
su
(
fatty acid • A [ fatty Aage WA )
② Transpo Talim
synthetase ) CoA
① su
Activation
-
EAT -
"
-
dehydrogenase
-
Acyeco apnz
1- ( 7 Rounds )
)
t.CI Trans D2
I
• 8
Acetyl WAX to 80 R -
C -
- C -
-
CoA su -
[Enoyl CoA
)
•
°
7 FADhzxl.es
7 NADU X 2 5
105
IF -5
( Enn
? n.la?usAe,1thao step @
EO
-
@EaTpynaoi
GROSS Is further cycles [ step -1 .
> 2 > 3>4 ] R -
c -
"
c -
-
CoA -
su
hednoxgttcyeoa
'
tis
①
-
T
Total CoD NADHB ( keto
aye A
M
-
•
R d WA
'
-
Sh 5¥43 theft go.wa.sn dehydrogenase ]
ATP
-
-
n
-
step ③
I la ,
'm :O ' one
•
Efficiency g p oxidation
-
on
,
-
ca wasnt
-
) O
[P -
keto
fatty acyl CoA ]
in about 33%
[ Acetyl-CoA ]
↳ TCA
cycle lkneb cycle 77¥72 ? III Cio ATP ]
=
Citric Acid cycle
Function
oxidative oxidizes
( is The
final common
pathway that
acetyl -
CoA to coz .
( 21 The source
g
reduced
coenzymes
that provide the substrate
for the respiratory chain .
Glucose
Oxidation
I
Pyruvate - Fatty acid
Fats aid
Ketogenic A- A
engines! ;÷÷s÷:
significance og citric acid cycle
•
•
ATP
generation
o
final common oxidative
pathway
metabolic
•
°
Excels carbohydrates → Neutral fat
°
Carbon skeleton og AA enters citric acid cycle
•
Amphibolic
a
Anap lentic role ( form intermediates for
other rkns )
=
EE
d T is
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g E s
n
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Es TT s o
N e
d a- E s E
B
"
IE E N
E I
n m -
i -
i w
D D
O
p
Poison
"
flown acetate
"
Rat
competitive )
•
( Non -
• a -
kg in co -
Mutation
[ '
( Suning CoA
* Isocitrate d
¥u,
Kay
-
E- oh Glutamate
-
→ parents binding
q d -
kg to Histone
competitive )
• Succinate dehydrogenase →
by Malon ate
( competitive )
EFFI .
g tenter ediates
Acetyl YA
m>
Fatty acid
synthesis .
Aspartate citrate
-
-
oxaloacetate
[
Malate a -
Lewglutamic
'd I
1 [ succinyl y
ace
Glutamic Acid
Gluconeogenesis y
CoA
y, t
GABA
Heme Keholgsis
Glucose
Pyruvate
→ GNIIUX
→
Tryptophan Alamin?
-
'
!
Acetyl-CoA
Aspartate
wrtiahaeetak # g. hate
f a-
i
.
Ketoglutarate
Phenylalawsfuranmate §
(
nine g
I
-
Tyrosine
seeing
WA
,
aluytamate
Histidine
§
'
Arginine .
Pnopionge -
wa Proline
Valine ,
/ In
Isoleucine Odd chain
acid
Methionine fatty
[ App Available ]
Oxidation
Biological ETC
&
-
(t 1 A T P :
ATF in the
• universal
currency g energy
within
lining cells .
•
The hydrolysis g
ATP to A DP releases -
7.3kcal
/ mo L .
ergo .
113 ATP
- -
-
,
g an
uses
up .
other
requiring
energy processes biosynthesis g
are
°
macromolecules ,
muscle contractions cellular motion , .
•
ATP in
continually being hydrolysed regenerated and .
at rate g 3 molecules
/ i about
a see -
e Irs
kg 1 day .
⑦ Creatine Phosphate
• CP ( phosphocreatine ) provides high energy
a reservoir g
ATP to
regenerate
by
ATP
rapidly ! catalysed by
Lohmann 's r k n
creak
none .
heart
Energy
to
myo fibrils kinase
by
in creatine
•
shuttle
energy
.
.
CP is smaller molecule than ATP
therefore
, ,
CP can
rapidly
diffuse from myocardium to
myo fibrils .
Oxidative Phosphorylation : courtiers
.
NADH €4 HAD
+
t H
+
+ ④
÷
Cy tf
↳
energiya
←
c-
↳
en
④
←
+
H2O
2h
{ Oz
→
+
pace
*
tY¥÷dI7nen ant 4
4 ht 2 Ht
e.me#iIE:IfEtfEIIaeEf
M
.
EH¥
mplex I
#
to 0
Fe S
mini
-
*n
Compte I
reductase NADH
• It in also called NADH - co Q or
dehydrogenase .
and
transferred from NADH to flavin prosthetic
+
2 t H
-
•
e are
group
.
t +
MA D H t H t F M N →
F M MHz t NA D
Energy released in is
4 ht out g mitochondria .
"
in
: : :X : : : :÷:÷.xi ..
Complete II . succinate -
Q - reductase .
The electrons
from FA DH enter the ETC at level
g coenzyme Q
.
•
z
energy
as .
•
Three major systems that transfer their electrons to complex I
are :
( as
succinate
dehydrogenase
cbs
fatty aye
-
coth dehydrogenase
cc ) Mitochondrial
glycerol phosphate dehydrogenase .
Summary succinate
? Ii:: ::X
:
FAD &
e.
)c ...
. .. .
Complex HI
•
Cytochrome Reductase .
4 Ht
• Free energy in -
10 kcal Imo l ( released ) & are
pumped out -
East
'
:X , , esta
( Fez t)
.
c. to es ,
( Fes ) ( Fest)
on
e
panes
•
are
.
During this , 2h
-1
am
pumped out -
:
seminary (feat ) " ta ashes ! can,
Cy t
)(
""
-
cost acres , Cy ta -
az ( feat ,
cut , 02
Complete I ( ATP synthase )
o g t in protein assembly in inner
a mitochondrial memb .
Proton ATP
synthase in transmembrane protein
pumping
° .
units
.
Two
functional : Ft e Fo
inhibited
°
Fo
, .on
?
O
for Oligomycin , as Fo in
by oligo nyein .
( serves as
proton channel )
.
Fi .
It projects into matrix . It
catalyses Atp synthesis
++
ATP syn -
mg
wins
Mg ions .
"
I NADH → 2.5 AT P E
FA D l I- → I .
5 ATP
Glucose → 32
Tnt
Ace ly - co
A → to
Palmitate → 106
DNP
2,4 dini
to
phenol
[ App Available ]
Heme synthesis and Breakdown
•
Heme in
present in : . Heme in
produced by combination
(e)
Cytochrome s .
get in a derivative g porphyrin
( di Peroxidase
(e) catalase °
since an atom og
iron in
present ,
if Tryptophan pyrrolase
'
heme in a
fern proto porphyrin .
Nitric oxide
( g, synthase .
Biosynthesis g
Heme
•
site =
Almost all tissues
•
esp
- Norm oblasts ( not
by
matured
erythrocytes )
°
Imp -
steps ( as
b)
PBG
( P BG →
Uno
po
-
phninogen
) U Proto
porphyrin
c
( →
*
/ .F÷÷÷÷
-
(d) Gm corporatism
g
Fe .
Some Great
Doctors
WA Palpate
succinyl -1
Glycine Heart
Cala synthases
coa.ws:
acid ( ALA )
2x S Amino Levulinic
L Pn
4 x
Porphobihinogen ( PB h )
' deficiency
Hyjftwnymethglbilane
-
og
-
4 Nh ,
- met tent
lumps )
4717 Porphyria
#orphyrinogen
[porphyrin
Uno
og
em III co
synthase ]
→
deficiency
A P
Y
U HI
( open -
II )
¥¥I congenital
erythnopoeihz
462$
p a
Porphyria .
Cytosol /
~
[ Uno porphyrin og en decarboxylase] Acetyl
t
M p
p
Copnoporphyninogen HI ( CpG Metlife
)mtym
→
-
HI
th NADP p p
Mitochondria
-1¥
!
p m
NADPH [ Co
porphyrin
co 292-7
pro
ogeonwda.gg -
Hereditary cop no
por
physics
Pro porphyrin ogen Mpp Pmopionye
=
HI
( PPG III ) MT TM t
Vinyl
-
TI
-
P v
#
P M
I [Proto
4h porphyrin og en oxidase] -
Deficiency
tho
Va
egate Porphyria
porphyrin II
+ Fe
"µµm[etienne synthase / Ferro chelating →
Deficiency
1
Pro top hernia
*:-
I
inhibits the
:/
.
Heme syn T
StG
.
I [ ALA synthase )
ALA
a co
synthase by acting as
v
repressor
-
GALA
also
! [ ALA dehydratase] o
ALA synthase wi
inhibited
PBG allosteric
hematin
ally by
f EUI -
Curro porphyrin og en
synthase) .
HMB
PHI by .
So lead toxicity
( P oxidase )
.
causes
I [ Po ] -
-
Anemia .
P
j (F) -
(ferrochelatase)
Heme
→
Catabolism og Ilene
•
Degradation g Hemoglobin RE
g
liver ,
spleen ,
Bone marrow
•
Macnee phages
Hb
.
uptake g Bilirubin by
f- Globin -
s AA Hepatocytes
Heme
Microsome
.
Conjugation
bile
p og
ftp.fgyne
NA " secretion into
macrophages
)
oxygenase
.
↳ co
( omen Bioliverdin
colour )
( MA "
.nl/CBilinndinRedui.aY!jM
(yellow
Bilirubin ( Unwary 're
Bilirubin )
gated
colour ) ( Toxic)
admin
( Not soluble in water )
- Bilirubin
I ;¥:} ::& :
tcnepatoyl.es )
T
.de/njOpmuntsBaeklowoBilooo-s
o-8.tt
'b}7 :{goat
'T I og Bilirubin to blood .
④ bilirubin in
by facilitated keeps
soluble's ed state Excretion Bilirubin
diffusion ) Active
Process -
g
t water soluble
① conjugated
conjugated
The
Um Bilirubin
-
bilirubin → Bile
1 ( UDP -
⑤ About ①
Urobihinogenlu
g 0134
20 't
CB →
)
Bh
is reabsorbed from
intestine and returned u
stereo bilimogen
blood
to liver
by portal { ( SB h )
Fences ( 250-300
* Normal plasma Bilirubin
level mgldag )
ranges from Img Id '
02 -
⑥ Some
part g UZI
•
The U B 0.2 - o -
7mg Id l t
Coni . B 01 -
0.4
mg 1dL
Kidney
Bilirubin level
butbilin ( Gives Yellow
97 > 1mg 1dL
°
( L 4mg ) colour to
}
Urine )
day )
-
Latent Jaundice .
If Bilirubin >
2mg 1dL ,
it diffuses into tissues ,
of V
W t
[ App Available ]
Hemoglobin
structure g Heb :
females =
1dL g
Hb A 213
}
• = 2 a a
adult HBA =
97%
In
Hb F a
,
Hb
2x
zy Az 2%
=
=
Hb Az = 22 e 2 D H b F = I %
.
Each a chain in 141 AA and Beta / Delta - 146 AA -
bonds
p subunits
connected covalent
a e are
by weak non -
•
•
There are
1 heme residues / Hb molecule i. e one
for each
subunit .
•
Iron atom occupies the central position og porphyrin sing
.
•
In Hb , Fe remains in
ferrous state ( Fe "
) .
ordinate
°
Fe in linked to
pyrrole nitrogen by
imidazole
4 co -
valency
bonds and fifth a one to
nitrogen g
histidine
proximal .
•
In
oxy
- Hb ,
the 6th
valency g Fe binds the Oz .
Binding og oxygen
to heme
.
one
M c -
c - v
me c-v
'
CH
n
interaction )
-
H i
/
.
Position
.
's
Cooperatively
.
N i µ .
ten exc
M
T
C l #C Hb Hbo Hbo Hb 06 Hbos
Cyp
-
p c -
M → → → →
/
y , ,
Lys His
'
t time 2 times 9 times shines
# Arg
" n
-
\ Affinity
Globin C -
C -
H H
h
Lmf h
-
M -
-
Methyl ( -
ch
, ) i [ Pyrrole]
"
Vinyl ( Cn Chs )
-
V e -
=
Propionic Acid ( )
P = - Ch - Ch -
WOH
z z
Clinical applications :
hypoxia decreased
( it In ,
the Oz
affinity in with a
shift in
Obc to right and increase in 2,3 BPG inside RBC .
Adaptation to
high altitudes when
poz in low ;
(a) No .
M R BC A
(b) Comet A
g Hb
-
In anemia increased Oz
( 27 comet D H b
only I
unloading
-
, ,
will ensure
proper oxygenation g tissues .
(9 nurse relation )
+ he 2,3 -
B
pulmonary
PG level is Inc .
cyanotic
stoned blood
(5)
Transfusion g large volumes
of ,
which has
a low level y 2,3 -
Fetal Hb ( Mbf )
(a) Inc .
BPG .
and newborn to
•
ODC
g fetus are shifted left .
A
diminished
when
Major reason is
binding
saturation
g
2,3 BPG .
p 02=20 Hb F
mmhg ,
= 50% .
starts
•
Synthesis og
Hbf
by 7th week g gestation ,
becomes predominant Hb
by 28 th week .
At birth . so %
•
g n thalassemia ,
Hb Az A
derivatives
Hemoglobin
°
Oxy - Hb -
Dark Red
deoxy
- Hb -
Purple
met - H be Dark brown
carboxy Heb ( -
co -
Hb)
thus Oz
availability to hime decreases further .
Clinical
• 9
f co -
Hb level exceed 20%
, symptoms are breathlessness
and chest
headache ,
nausea ,
vomiting pain in .
• At 40 -
60% a
death can result .
Met -
Ib
state
When
formed
"
•
Fe → fest ,
met -
Hb cis .
•
About 75
'
t -
by NADH &
Cy
t b 5 5 20 y .
by NADPH system
and s y .
by Glutathione .
Sickle cell Disease
°
disorder
monogenic
.
acid
• The
glutamic in 6th Position g B - chain og Hb Avi
I
causing Polymerization g Hb molecules in RBC
A
Distortion
g
cell into sickle shape .
•
Hbs can bind and transport Oz and
sicking occurs
under
deoxygenated state .
•
Sickle cells form plug in capillaries and leads to
Hb#
Glu -
HbSB-6Glu#
Hb D ( Punjab ) p -
121 Glu -
G In
HbM/Pnoximal/His-T#
-
distal -
histidine
thalassemia
9T in the most
genetic disease and has
•
common a
about
carrier
frequency g 7%
but in abnormal
•
gt is normal Hb
proportions .
•
Reduction in X - chain A -
Thalassemia
while 13 - chain if B - Thalassemia .
°
Genetic defects may
be (a)RNA splicing defect
(b) Promoter mutants
(C)
Poly adenylate
-
-
on
signal
(d) Partial defect
gene
deletion .
B -
Thalassemia thalassemia
.is/.:i: : s
a -
x thalassemia
Dec d Chain
syn ry
. . . - .
chain
• Dec .
synthesis g B -
. Genetic defect in
gene
:÷÷÷÷ :O :÷:÷÷÷n
as
.
If three deleted
genes are ,
- in utero ,
since a - chain
•
Hypochromia Micro cystic in mint
Anaemia .
•
In
homozygous condition ,
clinical
manifestations are
•
In heterozygous ,
clinical signs &
symptoms are minimal
•
Hyper sp Lene 's m
o
Hepaho splenomegaly .
•
Repeated Transfusion in the
only treatment .
Myoglobin -
• Seen in muscles
• Mb content g skeletal muscle in
2.5g 1100g
•
Cardiac muscle =
I -
4g 1100g
Smooth muscle
0.3g 1100g
• =
• Human Mb = 152 AA .
( 17500 Da )
•
Mb one molecule can take 1 molecule
g Oz .
p Oz Mb saturated
Hg
°
30 mm 90%
}
= =
Hb = 50% saturated
Clinical
•
Severe crush
injury causes release
g
Mb
from damaged
muscle .
small molecular
•
Dark Red
o g t is also released in Myocardial Infarction .
Anemia
• Gt in most common medical problem in India
Hb I it condition
log 1dL
to in
9
f- a seven .
•
,
•
Most common cause in Iron
deficiency .
Symphony
[ App Available ]
Enzymes
6
.
major classes
of Enzymes
class I : Oxidoreductases
-
oxidation
This
group of enzymes
will
catalyze
-
another substrate
of or
coenzyme
.
A Hz t B → A t B Hz
As :
Alcohol + HAD
+
→
Aldehyde t NADH + Ht
( Alcohol
dehydrogenase )
class 2 :
transferases
- This class
of enzymes transfer one
group from
substrate to another substrate .
A -
R t B → At B -
R
As -
Hexose t ATP → Hexose - G -
phosphate 1- ADP
( H exo kinase )
class 3 :
Hydrolases
This class of enzymes can
hydrolyse by adding water
and then
breaking the bond .
As -
Acetylcholine + H2o →
Choline + Acetate
( Acetylcholine esterase)
Class 4 :
lyase
These
from substrates
enzymes can remove
groups
-
As -
Fructose -
1,6 -
bisphosphate →
Glyceraldehyde -
3 -
phos
.
class 5 :
isomerases :
- These
enzymes
can
produce isomers
of the
substrate .
As -
Glyceraldehyde -
3 -
phosphate →
DAP
( Trio se
phosphate isomerase)
Class 6 :
ligases
-
simultaneous
hydrolysis of ATP .
As -
ADP t pi
( Acetyl-CoA carboxylase )
Coenzyme :
•
The
prosthetic group
in called
Coenzyme .
Protein Part
* =
Apoenzyme
*
Apoenzyme
+
Coenzyme
=
Holoenzyme
Coenzymes may
be divided in 2
groups
:
associated
(a) Those
taking part in reaction with Ht
As -
N AHP ,
FMN . FAD
associated
lbs those
taking part in rkn with other
than
groups hydrogen .
As -
Coenzyme A
( n
Enzyme Concentration ( directly proportional )
substrate Concentration (
( a
directly )
( 31 Product concentration ( indirectly )
141 Effect of temperature ( first directly then falls )
( 51
Effect g pH ( bell shaped curve) ( Bell shaped curve )
an
response
is an
antigen / immuno
gen
.
Epitopes Antibody
'
will be selective
usually against
. -
response
specific spatial configurations antigen
which called on are
determinants
antigenic known epitopes ,
as .
Immune Response
mediated
in cell -
Immunity
121 Humoral
Immunity
Mechanism
Effector -
in
CeHatedIy : -
Against bacteria ,
viruses ,
almost
tries
all
parasites .
CBS
Rejection of Allograft Body to
reject implanted organ
-
destruction
mainly by T -
cell mediated mechanism
(c) Tumor Cell
function
( D,
Helper -
T -
( El
Suppressor function .
Production Kines
of Lymph
CFI .
°
Antibodies
produced by plasma cells
are .
• The
antigen antibody reaction leads to activation of
-
complement
system which destroys the foreign cells
,
.
in Classical
complement Pathway
in
Antibody dependent cell mediated
cytotoxicity
③
Agglutination
Ops ionization target cells
Cen
of .
does not
require complement activity .
• The
effector cells are neither 7 nor B cells ,
effector at sites
It is
of Tumors
•
.
Structure of Immunoglobulins
made and ( L ) chains
• The
Ig in
up of 2 Heavy Lte )
chains 2
light .
Depending on the
heavy chain make up ,
the
Ig are differentiated
into classes
5
major .
la '
IgG y heavy chain
-
( bi
Ig 'M
-
te heavy chain
chain
(G
IgA = a
heavy .
( di
Ig D= S
heavy chain .
(e)
.
chain
°
In human
beings ,
60% → K
type light
4 one chain
x
type light
.
→
.
constant ( C )
regions
with
regard to their amino acid
composition .
UH
chain heavy
Y! > General terms for light > for chains
°
. .
we
•
The first tos A As in light chains &
first A As in f chains
Its -
heavy
constitute the variable
region
.
could
the
body synthesise enormous
varieties antibodies
of different .
Fab &
E.Portions :
(i'
Papin ( proteolytic enzyme from papaya )
cleaves the
Ig so that
two fab (
fraction antibody ) portions & one Fc ( fraction cystallizable)
portion are
produced .
• The
Antigen binding part of Antibody is in fab
fragment .
other site
ciii Another proteolytic enzyme , Pepsin cleaves Ig at an .
Different classes :
Complement system :
°
Cell
lysis by antibody in mediated by complement system .
abbreviated
They
'
[
•
are C
] as c± to cos .
. The
complement activity in abolished if is incubated at serum 56°C ,
for 30 mins
, as most
of the
components are thermolabile .
The -
at room .
is
hours .
Primary &
Secondary Immune Response :
When
antigen is
injected
°
an
,
Antibodies start in 10
days
appear
-
Response decline
by
about 30 days .
IgM will be
predominant in this
primary response
.
-
More
prolonged l for months )
Induced
by immunization with toxoid killed
•
Active Immunity : , or or
attenuated
organisms .
As -
DPT vaccine .
Polio vaccine etc .
Passive
Immunity Protection
given by preformed antibodies
.
: in .
This is used in
immunotherapy against snake bites ,
tetany .
/
.
g. µ , ,.µ , ,
:
→
£
±
or
→
I
%
I
②
Biochemistry of Cancer
Introduction
-
:
Can crum
°
= n
cancer
Greek =
Kar Kino ma = Kar Kita Kam ( crab)
.
All cancers are
multifactorial in
origin
.
, , ,
,
environmental
factors
.
•
All cancers
originate from one aberrant cell ,
which
goes
on to
multiply and
produce tumor mass .
Mutagens :
Any
substance which increases the rate
of
mutation can
All
carcinogens Mutagens
•
are .
Examples -
X -
, .
, ,
aflatoxin
etc )
Antonieta gens
cis Vit A & carotenoids shown to
precancerous conditions
are reverse .
( iiis tit c
prevents cancers in
working
persons
with aniline .
animal studies .
µ, flavin oils are
phytochemicals that
posses
anti
mutagenic properties .
(vill Phenolic
compounds are
effective in
fighting mutagens .
( found in
grapes
,
walnuts )
Oncogene Viruses
°
Another etiological factor of carcinogenesis in the
integration
of viral
genes
into host DNA .
Oncogenes
Normal Constituents cells
Oncogenes of
°
are .
genes capable of
These
causing
°
are cancer .
and denoted
°
To
distinguish viral
gene
cellular
gene ,
they are V -
src &
C
respectively
src
-
oncogenes present
•
The in normal cells are also called as
proto oncogenes
-
.
oncogenes
are
known .
Growth Factors
Many oncogenes through act
°
the
production of growth factor .
•
These may be considered as
local hormones .
Interleukin and
interferons growth factors released
by
°
are
lymphocytes / macrophages .
in
Doubling Time : gt can
vary widely between lo
days to 450
days
with a mean
of about too
days in Tumors cells .
(2) Contact Inhibition lost
This
property is in cancer cells
-
.
131
Anchorage Dependence Malignant character is the loss of
-
acetyl of cancer
membrane
cell
.
called Metastasis .
Tumor
Maar Kers
called
They are also tumor indene substances
•
as
.
which could be
•
They are
factors released
from the tumor cells ,
They are
useful for the
following purposes
:
and
For
follow -
do , To facilitate detection
of cancer .
For
(c)
prognosis
.
(d) Precautions -
Tumor
markers are sometimes elevated in
conditions
nonmalignant .
• lather a
marker in med
for cancer
screening or
diagnosis ,
,
Anti -
cancer
Drugs :
-
Transmission :
About so %
by sexually transmitted disease ( STDs )
°
About blood
by
°
15% -
About 5%
by Mother to
fetus ( of infants to
•
-
n 30% born HIV +
mothers
may get the
infection )
Course :
klindowenod -
When virus enters the
body .
it is
multiplied in the
. The Virus
capsid antigen p 24 can be detected in blood .
This is sew
positivity .
person a .
3rd
•
About to %
g Seropositive individual
progress
to
stage
within 5
years
.
About so t within to
yrs
• .
.
AIDS Disease
Third
stage when the clinical
manifestations
-
-
in
start
By this time immune
system di
.
o Commensal microbes IT
years .
°
Some
infections by -
fungi : Candida
Cryptococcus
&
Virus :
cytomegalovirus Herpes simplex &
Parasites :
Pneumocystis carinii
Bacteria :
Mycobacterium & Salmonella
•
Cancers associated with AIDS an
Kaposi sarcoma and
NHL ( non -
and
Neuropsychiatric manifestations .
Clianifestakons :
lymphadenopathy be 2nd
o and Fever
may
seen
by end
of stage .
related
• AIDS
symptoms ( Ars ) are wide .
. Since
immunity Hi in
,
non -
brain etc .
•
Gastroenteritis & Tuberculosis are
predominant in AIDS in India .
Laboratory Analysis :
cis
by ELISA test .
( confirmatory )
( iii , T -
( Ivi 24 A
p
cut RTPCK ( real time PCR) -
To detect Hiv
particles in blood .
Involves
amplification and detection of one or more
specific
located
target sequences
in
specific Hiv
genes
.
structure :
-
cis Hiv
belongs to the retrovirus groups RNA containing .
viruses that
replicate with the help of transcriptase ( reverse RT ) or RMA
dependent DNA
polymerase .
Protein
ciii ,
components are named after
its molecular wt .
Nucleocapsid ( pg )
protease ( p lo )
Outer shell
Myn 's to ligated Protein
-
(P 17 )
[ About
pies D
p ]
24
Virus
Entry :
l " The
binding of Hiv with
target cell in
through a
receptor mechanism
The
envelope with bind with
ciii
gp
120
of vines
specifically CD4
molecule on the
surface of target cell .
CD4 acts as a
receptor for
tins
present
.
molecules
(
iii , The CD4 are on
surface of T -
and
entering receptors
HIV chemokines
(im uses CD4 as .
[ Replicating de ]
Immunology of AIDS
are in
,
to
immunodeficiency .
the
surface of T -
helper cells .
• Hiv
preferentially enters into T -
act
ciii
Macrophages and
monocytes as the reservoir
of Hiv
infection .
In turn , macrophage de
1400 blood
ciii , T -
helper ( CD4 ) =
cumin g
.
interleukin
Civ , Lymphokines such as
interferon ,
-
2 etc are lowered .
ANTI -
HIV
Drugs :
inhibitors
- -
① RT
anti Inhibitors
o G - classes og
-
HH
drugs .
② Integrase
[ 4 described
-
③ Protease inhibitors ④
Entry
here
] Inhibitors
④
①
②
( is Reverse transcriptase ( RT ) inhibitors :
Il
Aba caviar
''
(
Inhibitors Raltegrayir
ciis
Integrase : cis
ciis
Elvitegrauir
ciii , Dolce te
gravis
Prevention :
am
° Use
protections .
inactivate the
•
Introduction
McCollum Simmonds &
Kennedy isolated Hit A in 1913
•
, .
.
Hit A cis
fat soluble ( Active form is present in Animal Tissue ).
carotene)
°
The
pro
- vitamin
(B
-
is
present in
plant tissue .
°
B carotene has two
-
p ionone
rings
connected
by polyprenoid
chain .
molecules
carotene og wit tf
One 2
13
° -
.
All the
compounds with Hit A
are
referred as
Retinoid .
. Vit A Alcohol =
Retinol
Hit A Aldehyde =
Retinal
Hit A acid -
Retinoic acid .
°
As isomers are
possible ,
all trans
Retinal Hit
variety of AI
Metabolism thot A
-
&
Absorption of
• Intestine is the
major site
of absorption .
carotene cleaned di to
form Retinal
°
B in
by a -
oxygenase
.
Retinal Retinol
Absorption is along with
fats
° - o
NADH
and bile salts
dependent Retinal
requires .
Reductase
the retinol
Within the mucosal cell in
esterified with
°
, re -
fatty acid
,
incorporated into chylo microns and transported to
binds with
• One molecule g KBP one molecule y Retinol .
¥
"
Sheen)
°
In Vit A
deficiency .
the RBP in blood a,
Uptake by Tissues
The retinol binds to
complex specific
°
-
KBP
receptors on Retina ,
skin ,
gonads & other tissues .
of DNA .
And activated
eventually genes
°
are .
Biochemical Role og
lit A
-
Rhodopsin ( a membrane
protein ) found in
photoreceptor cells
of Retina .
made retinal
It
of protein opsin
is & I cis
up
° - .
• IN hen
light falls on retina ,
the I cis
- -
retinal isomerize to
all -
trans -
retinal -
° The all -
trans retinal -
in then released
from protein -
G -
protein a
generation og cyclic
-
GMP .
°
Cyclic GMP acts as the
gate for cation
specific channels .
residue
° The
signal in terminated
by phosphorylation of a serine
activated kinase
of rhodopsin ,
by an
enzyme rhodopsin ,
so that
tin bind and inactivate
the
inhibitory protein p -
arms can
rhodopsin .
Regeneration og I -
cis - retinal :
la )
After dissociation ,
opsin remains in retina ,
but trans retinal -
later
-
cis -
retinal is
generated ,
reaches retina and this reattachment
in critical for shutting off pigment 's catalytic activity .
cel
Alternatively ,
all - trans - retinal in
transported to liver and
then reduced to all - trans - retinol by alcohol dehydrogenase .
The all -
trans retinol
- to H -
cis - retinol and finally I -
cis - retinal
in liver .
tissues
differentiation og .
③ Retinol in
necessary for the reproductive system .
⑨ Antioxidant
property
③ 13 carotene be attacks
may useful in
preventing Heart
-
.
and skin .
Deficiency of -
Vita
Night blindness
cis or ,
Nyctalopia
121
Xerophthalmia
Bi tot 's
(3)
spots
14 ) Keratomalacia
⑦ Preventable Blindness
161 Skin & Mucous Memb .
Lesions .
Causes for lit A
deficiency
cis Decreased intake
ciis Obstructive jaundice causing defective absorption .
reduced
iiis Cirrhosis of liver
leading to synthesis g KBP
.
( in severe malnutrition
where RBP
all chronic nephrosis ,
is
excreted
through urine .
Men
ii , 750
peg / day
=
tooo
-
( in
Pregnancy = 1000
Mg / day
Angus &
coworkers isolated wit is in 1931 and named it
calciferol .
or
-
action radiations
by g Uv .
Commercially the is ,
-
Ergosterol →
Ergocalciferol ( Vit D2 )
UH
Some Hit D
imp
:
are
-
• .
Metabolism
#
of Vit D
Absorption :
Along with
lipids ,
vit D in
predominantly in
proximal
GIT .
Absorbed wit D enters circulation via
chylo microns .
l
④ ④
l
( liver )
- -
kidney
25 -
hydroxylase t -
d -
hydroxylase Calcitniol
①
( la 25 -
Dihydnog
① ① i
@ cholecalciferol
( Cholecalciferol ) ( 25 -
hydroxy cholecalciferol )
Vitamin
• Calcitonin thus
formed in
kidney in the Active form g
.
Regulation :
dehydro cholesterol to
cholecalciferol is
dependent on
exposure
to
sunlight .
es 25 -
(3) Hypercalcemia ,
hypophosphate mia & PTH stimulate the vito
(41
Estrogen also help regulation
in .
Functions :
It intestinal and
"' increases calcium
phosphorus absorption .
coordinates the
⑦ Calcitriol
remodeling of bone and increases
mineral density .
, .
ad
is , Cal citniol increases the
reabsorption g
calcium
phosphorous
by renal tubules .
(4)
Regulation of Immune system
is ) Regulates epidermal proliferation og
skin .
Hit
Deficiency og is
The
deficiency diseases rickets in children &
°
are
Osteomalacia in adults .
• 25 -
Hydroxy Dz : > 30
my 1mL ( optimal ) 3150
ng 1mL
I
ng 1mL ( insufficient )
20 -
29
Toxic
-
10 -
19
ng 1mL ( deficiency )
Causes for dit D
deficiency :
not
cis
Deficiency of wit D can occur in
people who are
and steatorrhea )
ciii Malabsorption g
lit ( obstructive jaundice
diii
Abnormality g Vit D activation .
In certain
drugs like pheno barbitone , phenetoin etc can
influence
wit D level .
Requirements -
g
titis
children
cis to
Mg / day
a-
iiis Adults = 5 -
lo
Mgl day
ciiis
Pregnancy ,
lactation = to
teglday
Above
(in
age g
60 = v lo 15
My 1
day
-
Clinical Features :
Rickets : -
civ )
Enlargement y Epiphysis
is Harrison 's sulcus
( Vil
Rickety rosary .
Osteomalacia : -
is More to fracture
(
prone
Iiis Bones are
softened due to
insufficient mineralization .
How to
- diagnose :
② Meditates
( med notes .
)
in
Fat solublellit.tt
Introduction :
awarded Nobel
was
prize ( 19371
.
l t -
tocopherol )
Metabolism of Hit E :
tocopherol in 0.5 -
t
my 1dL
.
•
gt vis absorbed
along with other
fats and needs the help
of bile salts .
°
Tocopherol is absorbed and transported as chylo microns .
. It in then stored in
Adipose tissue .
,
may
oxidised and excreted bile
in
after conjugation with
glucuronic acid .
Biochemical Role og
Nit E
-
°
St in the most
powerful natural antioxidant -
o Vit E
protects RBC
from hemolysis By preventing the peroxidation .
it
keeps the structural functional integrity og all cells
& .
° It is also anti -
aging as it
protects from free radicals .
.
It reduces the risk of anthem sclerosis by reducing oxidation
of LDL -
diseases
children
Hemolytic anemia in
°
.
Infertility
•
Neurological problems
• Neuromuscular
problems such as
spinocerebellar ataxia ,
myopathies ,
etc .
*
Normal adult
body
In . the
wit E stores can meet the
Males
mg / day
•
=
to
Females 1
8
day
my
=
Pregnancy = to
my day
1
4 act lion
12mg day
a
= 1
g
Vit E .
Hypervitaminosis -
E
• At
high dose (s tooo Io
per day ) ,
it
may
cause
tendency to
hemorrhage ,
as it is mild anti -
coagulant
.
"
letter vitamin
' '
koagulation
"
a
K -
o Vit K is
naphtha quinone derivatives ,
with a
long isoprenoid chain .
side chain
.
The
length of Hit k ,
will
differ .
•
Vit ki 20C side chain
( phylloquinone ) Vit
•
Henrik Dam isolated Vit K, ( 1929 )
Edward Dois
y
- vit Kz ( 193g ) } awarded Nobel Prize .
( 19431
Metabolism :
Chet omicrons .
o Vit K
may
be derived from diet or intestinal bacterial
synthesis .
lipop.ronst.ci
Biochemical Role of Vit K
Vit
in K is
necessary for coagulation .
in Factors
dependent on hit k are Factor I ( prothrombin ) ,
K dependent
gamma carboxylate necessary for
141 Vit in also on
the
functional activity of osteocalcin well structural as as
proteins of kidney ,
lung &
spleen .
Deficiency of Hot K :
°
In normal adults
dietary deficiency seldom occurs since
Daily Requirements ;
It is micro som al
enzyme
•
.
gt
.
requires Co2 ,
NADPH and
educed wit .
K .
°
9N this
process
vit
passes through
a
cycle -
Hypervitaminosis K
•
Hemolysis
°
thermic terns
*
.
Brain
damage
1
Manifestations
9
Toxicity .
Administration of
large
°
quantities of Menadione *
I
Toxicity in
children .
② Meditates
(med notes .
in )
Water Soluble V
Introduction :
•
In 1933 ,
Haworth established molecular structure and renamed
it as
Ascorbic Acid .
o
Vit C in water soluble ( easily destroyed by heat .
alkali &
storage )
St has
reducing property due to
°
Metabolism
acid absorbed
Ascorbic
readily by GIT
°
in .
o L -
Ascorbic in absorbed
by Active transport and
Dehydro ascorbic in absorbed at a
faster rate .
•
The vitamin is excreted in urine .
Oxidation
.
of ascorbic acid
yields dehydro aerobic acid ,
which
oxidised further to acid
is oxalic
through dike to -
L -
gulonic
acid .
and
.
Ascorbic acid in
partly excreted
unchanged partly as
oxalic acid .
1.2
my g
my 1100
25
1413C
=
cc
g
level dit
•
The
highest og c in
found in
pituitary .
adrenal ,
its
Collagen synthesis :
Vit c Fe
" Hydroxy proline
, a
ketoglutarate
-
lysine "
Hydroxy lysine
• These
hydroxyl groups
are crucial
for maturation
of collagen .
'
•
Tyrosine →
p Con) Phenyl pyruvate Hit c cu -12
Tteomogentisak
!
Do amine
Dopamine
Hit c Catz
Norepinephrine
Tryptophan -
Vite
5 -
steroid
r synthesis in
131 Bile acid synthesis steroid adrenal cortex
oogenesis
& .
( 41 Anti oxidant
- : Vit c in an anti - oxidant that prevents free
radical
damages .
°
9T
may prevent cancer
formation -
to
hemoglobin .
Hot
Deficiency Manifestations y
c
a
scurvy
( Infantile
12 ) Barlow 's Disease
Scurvy )
(3) Hemorrhagic Tendency [ Pinpoint
141 Internal
hemorrhage hemorrhages]
151 Oral
cavity damage
161 Bone becomes weak
folic Acid I,
Tite
Dietary Sources g
o
Rich sources are :
700mg 1100g
amla ( )
leafy Vegetables .
Daily Requirement =
75mg (day
( 50mL
orange
For iuices
pregnant ,
aged
=
100mg / day .
Therapeutic Use
( in Mit c in essential
for wound
healing .
Toxicity
°
Since it in water soluble , excess vit C is excreted ,
not accumul
-
abed .
• >
2000mg y
Vit c
daily can cause
teoveroad .
Bi
.
Introduction :
•
Vit Bd in also called Thiamine .
•
Thiamine contains a substituted pyrimidine ring connected to a
substituted thiazole
ring by means
of methylene bridge .
addition two It
of phosphate groups ,
with help g ATP .
in
catalyzed by thiamine
pyro phosphotransferase .
Physiological Role
of Thiamine :
enzyme form
in
[
TPP thiamine
pyrophosphate
It med oxidative
in in
decarboxylation keto acids
•
a
g
-
ciii d-
ketoglutarate dehydrogenase : An
analogous biochemical reaction
that requires oxidative decarboxylation
TPP in
g a -
ketoglutarate
to
succinyl CoA d coz .
.
HMP .
so ,
higher intake of carbohydrates a
requirement g thiamine .
Deficiency Manifestations :
IAI Beriberi :
symptoms include
-
Anorexia
Dyspepsia
Heaviness & Klea Kness .
CBS Inlet Beriberi : Here cardiovascular manifestation are
prominent .
Edema
-
n
legs face trunk
. .
and serous cavities .
are observed .
Beriberi
(c)
Dry : 9N this ,
cats
manifestation
are the major
features . Hae
king becomes
difficult .
disturbance Paralysis
sensory
→
.
IM
Infantile beriberi 9 't in infants : occurs born to mothers
it '
later niche -
-
Clinical
features are those g
encephalopathy plus psychosis .
affected .
Thiamine
deficiency impairment
°
may
cause conversion
g g
°
Aleurone
layer of
cereals in a rich source
g
thiamine .
-
-
Yeast in also a
good source .
F-
Thiamine
partially destroyed by heat
°
in .
=
I - Irs
Thiamine in
useful in treatment
°
Beriberi .
Alcoholic Polyneuritis .
Neuritis is
Pregnancy and
Neuritis g Old
age
.
⑨ Meditates
( med notes in ) .
Vitamin -
132
Introduction :
state
pure
.
.
This vitamin in
synthesized by green plants and
microorganisms
.
attached
o
Gt has a
dimethyl iso all oxazine
ring to which a ribitol in
in co
enzyme
-
°
Co -
Enzymes
enzymesA ily
containing
of Riboflavin
riboflavin are
:
called Flavoprotein
D- Ribitol
s
) .
,
oxidation FAD
accepts two
hydrogen atoms
from
During
°
process ,
substrate .
In turn .
FAD in reduced to FADHZ .
-
The two nitrogen atoms
of iso all oxazine nucleus accept the H
atoms .
During ,
FMN in .
in re
by
molecular
oxygen
to
produce hydrogen peroxide .
In
Respiratory chain the NADH
dehydrogenase contains
°
, FMN .
"
MAD → FMN →
Cog
Riboflavin Deficiency :
( at Cage : It in uncommon as it in
produced by intestinal
flora .
pellagra kwashiorkor .
( bi Manifestations :
symptoms are confined to skin and mucous membs
cis Glossitis
iii ,
Magenta colored
tongue
ciii , Cheetos is
an
Proliferation g Bulba .
conjunctival capillaries .
.
Adult daily requirement 1.5mg ( day -
-
In
Pregnancy lactation .
& old
day
1.7 to 2. l
age -
omg .
② Meditates
( med notes in ) .
Vitamin -
133
Introduction :
°
Hit Bz in also called Niacin con, Nicotinic acid con Vitamin PP
It in also called
Pellagra preventing factor Goldberger
.
g
.
g
.
4¥
- comma
• Niacin in a
pyridine -
3 -
carboxylic acid .
in .
•
In NAD -1 or NADP ? the reactive site in C 4 and N atom nicotinamide
of
-
Ring .
Co for my Niacin
enzymes g :
-
enzyme forms
• we co - HAD NADP .
.
It in attached to Ribose phosphate to form a Nicotinamide mono -
- nucleotide
AMP + Nicho ninamide Mono nucleotide =
HAD
+
¥÷ie÷÷÷:c :÷÷÷n÷÷÷i!
'
" """"
÷: :*::
.
.
-1
In acid attached to Ribose
case
of NADP one more
phosphoric in
.
.
og
Niacin AMP
Deficiency
.
"'
Pellagra :
Deficiency og
niacin leads to
Pellagra ( rough skin ) .
↳ St
by
also caused
deficiency of Tryptophan
in
the as well .
as
inhibited
is
by estrogen metabolites .
Some
symptoms
°
are :
cis Dermatitis -
Iiis Diarrhea
Causes :
cis
Dieting of tryptophan ( GO.gg )
cii , Deficient synthesis 1mg Niacin
ciii , Isom.ae#Anliubrculous drug which
-
cixi Hart
nap
disease :
Tryptophan absorption from intestine in
defective
s
congenital disease .
°
Moreover ,
tryptophan in excreted in Urine in
large quantities .
leads to lack
This
of tryptophan and consequently deficiency
•
nicotinamide
of
.
Fish
Rice
Polishing a
.
liver
Peanut
legumes
Normal Requirement
1dg
°
=
20mg
.
my 1 day
Therapeutic Use g Niacin :
°
It inhibits flung FFA from adipose tissue , so
acetyl CoA pool is
Niacin
•
High dose , in
useful to reduce
lipoprotein [ lpca ] levels
, .
Toxicity :
350mg / day
Liver
damage
°
=
.
day serious
toxicity liver
damage
> 2
my &
°
a
.
② Med Notes
Tmednotes .in)
Hater soluble lit .
136
Coenzymes Forry :
applied derivatives
o Vit Ba in term to a
family of 3 related
pyridine
( as
Pyridoxine ( alcohol )
( bi
Pyridoxal ( aldehyde)
H
Pyridoxa mine .
[ Pyridoxine] [ pyridoxamin.it
•
It in formed by pyridoxal kinase ,
utilizing ATP .
acts [ PLP]
enzyme for many
° The PLP as co -
reactions in AA metabolism .
Trans amination
(a)
( catalyzed by Amino transferases which
the
employ PLP as co -
enzyme I
(b) Decarboxylation ( AA in these mkn
require PLP as co -
enzyme)
cc , sulfur containing A- As .
( PIP
plays an
important role in methionine and
cysteine metabolism )
id , Heme
synthase in PLP dependent enzyme)
synthesis ( AIA a
Deficiency Manifestations :
°
In Hit Bo
deficiency ,
PLP dependent enzymes function poorly .
(as Neurological Manifestations : serotonin .
epinephrine ,
noradrenalin
and
gamma
amino
butyric acid ( GABA) are not produced
properly .
°
In children .
136 deficiency leads to convulsions due to decreased
formation g GABA .
cb , Dermatological Manifestations :
Deficiency g 136 will also
affect
tryptophan metabolism Since niacin in produced from .
In adults
(c '
Hematological Manifestations : ,
hypochromia micwcy hi
anemia occur due to inhibition
may og heme
synthesis .
Ba
therapy
Xanth uremic aciduria &
homocysteine nd
are
.
Effect D
Dzugs :
Act
ciis Cyclo serine : as 136
antagonist
(
iiis Oral contraceptives : Causes mild Hit Bo
deficiency .
cixi Ethanol : Bo
deficiency neuritis in
quite common in alcoholics .
Dietary Sources :
°
Yeast .
Meat
• Wheat
.
Egg
°
legumes
•
Green leafy
-
oil seeds vegetables .
• Adults -
- I -
2mg lday
Pregnancy / Lactation = 2.5
mgl day .
Toxicity :
°
Doses over too
my
→
Sensory Neuropathy .
• >
100mg Imbalance , numbness ,
muscle weakness & Heme
Damage -
② MedN
( med notes .in )
Vit -
Bs
Introduction :
.
It in also called Panto thermic acid .
°
Panto the mic acid contains and amide
13 alanine D -
pantie acid in
"
linkage
%
.
Ho -
Chz - - -
co - NH -
CH z
-
Chez -
COOH
- -
Pantai Acid p -
Alanine
I
Pantothenic Acid .
ethanol -
amine
He
Parts Co A
g enzyme
'
-
t.co At
Coenzyme Activity :
( is The
P mercapto ethanol amine ( Mhz -
cuz cuz
- -
SH ) contains one thiol
or
sulfhydryl ( -
su )
group
.
Thus colt in sometimes abbreviated
as CoA -
SH .
[ enzyme in
acetylcholine synthase ]
Liii , Pyruvate t CoA t NAD
Acetyl CoA coz
t
→ t + NADH
Acetyl WA
(a)
bi
(
succinyl CoA
(c ) HMG CoA
id , Acyl CoA .
an co -
enzyme
A in an
important component of fatty Acid
synthase
complex . The
Acyl carrier
protein also contain Pantothenic Acid .
Deficiency of Pantothenic Acid :
°
Go plan 's
Burning foot
syndrome in
manifested as Paresthesia
Ran in humans .
. The
syndrome is seen in
Famine ,
Prison
camps
and in some renal
dialysis patients .
Sources :
in .
intestines
By flora in
•
.
•
Yeast
Good
Egg } sources .
Liver
137
Introduction :
•
Also known as Biotin .
of an a
The
carboxylic group forms Amide linkage with epsilon H lysine
°
g
residue .
Coz carriage .
↳
Imidazole
Ring Apoenzyme lysine
→
!
Thiopheneing →
Coenzyme Activity :
as co
enzyme
-
a .
°
Biotin captures a molecule
of Co2 which in attached to N g biotin
molecule .
Biotin
Antagonists :
is Avidin . a
protein present in
egg
white has
great affinity to biotin .
Thus raw
egg may
cause biotin
deficiency .
( is
Prolonged use
g Antibacterial drugs .
cii , Biotin
deficiency symptoms include -
(a) Dementia
(
b,
Atrophic Glossitis
14
Hyperesthesia
id , Muscle Pain
(e) Anorexia
if , Hallucinations .
Ig )
fatigue .
eh , Hair loss
cis Dermatitis
Iki Abnormal
Heart Actions .
Sources :
•
Flora g Gut in
sufficient .
°
Yeast
Liver
Peanut
Soya bean
} Rich sources .
Milk
Yolk
•
Requirement -
- 200 -
300mg
Bg
Introduction :
o
gt is also called folic acid .
Pteroic acid
f ,
+ Glutamic acid
°
Folic acid in soluble in water and
Absorption :
absorbed
It in
readily by Upper part 7 Jejunum
°
.
•
In blood .
it in
transported by P globulin -
up
IN here co -
enzymes
are
produced .
Co :
enzymes
-
of Folate
Cannes
Deficiency :
°
Common in India .
fit
. Most common
deficiency .
( is
Pregnancy .
His
Defective Absorption .
ciiis
Drugs
civi Hemolytic Anemia .
( vs
Dietary deficiency
( vis
Folate trap
[ Maczocylic
.
Anemia]
EMegakblmaknkem.az
Deficiency Manifestations :
civi Birth defects 1- Neural tube defects like spine bifida in foetus)
(v ) Cancer
°
Yeast .
• Milk in
poor
source
for folic acid .
• =
Nerve
•
Dose over >
Img :
damage
crystallization in
kidney ( Renal damage )
Folate Antagonists :
( i
, Sulfonamides
a
Pyrimethamine ( antimalarial )
③ Aminopterin e
Amethyst -
erin
methyl folic
Y'
( 4 amino 10 acid )
(
-
② Meditates
( med notes .in )
til ater soluble fit -
Biz
Introduction :
°
Also known as Cobalamin .
extrinsic factor ( EF ) of Castle and
Anti pernicious anemia
factor .
Contains cobalt wt
4.35%
by
°
.
°
Hit Biz I cobalt atom coordinated with
cis
Absorption of lit Biz requires two binding
protein .
( at
factor (
Intrinsic in
gastric juice )
bi
(
Cobalophilin ( in saliva )
ciii
pepsin release the
Gastrin vitamin
Biz complex in on
The whole IF -
complex
Biz internalized It may
in . be noted
predominant .
•
Frans cobalamin ,
a
glycoprotein .
in
specific carrier .
a do -
Biz form ,
in combination
with trans comin .
2mg 9 Biz
( sufficient for 2-3
yrs )
Nutritional India
in - Hit Biz
deficiency very
in common in .
Only source
og Bu in
vegetarian diet in curd / milk .
(2)
becreaseabso-rpk.com Malabsorption syndromes : or
Gastrectomy .
-
so IF I
defective absorption a lit
.
. Biz .
( 41 Giant trophy :
Atrophy a Gastric epithelium → IF I →
Biz it.
requirement of vitamin
153
Pmg : Inc .
in
pregnancy
in
another came
og
Hit Biz
deficiency .
seen in .
Deficiency Manifestation :
ciiis Abnormal
homocysteine level .
civ , Demyelination
can Subacute combined
degeneration .
His Achlorhydria
° Not present in
vegetables .
•
Curd in
good source .
Requirement -
I -2
Mgl day
Pregnancy =
2mg Hay
Hormones Mechanism of Action Molecules
-
:
t
&
signaling-
y
[ PART -
I]
. Two
types :
ca , sender cell
og cells
ab ,
Target cell
Classes of Hormones :
types a Hormone
signaling :
Response .
cb, Pan -
signaling in
effected by local mediators
site
which have their effect near the
of secretion
without
entering circulation .
Signaling whenoccurs
type g
cells are
are
(n G -
binding protein ,
which
regulates an
enzyme
that
generates an
intracellular second
messenger
.
ciis
Recywsin -
GMP
His Gated ion channel
- Open -
/ closes in
response
to concentration
g signal ligand or membrane
potential -
( in
Receptor Guanylyl cyclone -
( vs
AdhesionReceptegn.nl -
changes conformation .
SEYNE
in with cell -
surface receptors -
Peptides / Amines
"" with intracellular receptors -
On Nucleus .
Steroid ,
Thyroid
hormones
discovered Sutherland
•
• Action is
through G -
Protein coupled receptors
( GPCRs )
When binds
any ligand
( is ,
the Gpcrs
Different G -
Proteins present in the cells
are
that are
coupled with different receptors
and
activating different efforts proteins .
cii , G -
and
phosphodiesterase hydrolyses cAMP →
5
'
AMP .
.
Cyclic AMP is a second
messenger produced in the cell in
to activation protein
response of adenylate cyclase by active G -
.
, in increases
several times .
civ , Second
messenger
activates PKA
•
This complex has no
activity . But cAMP binds to the
regulatory
and dissociates the tetramer into
subunit
regulatory
and catalytic subunits . The
catalytic subunit in now
free to act .
Hi kinase
Phosphorylates the
Enzyme .
a
group from ATP
residues substrates
threonine or
tyrosine of .
enzymes may
be activated inactivated
or
by this
phosphorylation .
° This in an
example of covalent modification .
sensitive
Glycogen phosphorylase & Hormone
lipase controlled
°
are
by cyclic Anap .
G- Proteins :
(G stimulatory)
different
-
About 30
G -
proteins identified
are ,
each
being used (G -
inhibitory )
for different signal
transduction pathways .
wiki
snippet
Protein kinases :
• Some
important are listed below :
Calcium based
signal Transduction :
.
Calcium in an
important intracellular regulator of cell
function
like :
( is contraction muscles
of
secretion hormones
( ii ,
of
(
iii , secretion g
Neurotransmitters
cix , cell division
( vs
Regulation 9 Gene regulation .
from either
opening 9
Cast channels in
the
plasma membrane /
cast channels in ER .
rapidly taken
up by Ek to
terminate the response .
Phospholipase C
Pathway :
trigger sudden cytoplasmic
"
•
levels to channels
500 tooo nM
by opening in ER plasma memb
-
or
.
The most common
signaling pathway that increases cytoplasmic cat
in Plc
pathway .
( PKC )
from ER .
evil The cat bind to PKC and other proteins & activate them .
Introduction :
referred as liver
function tests ( LET) -
Tests
classified functions of liver
•
were on
major :
(c)
Synthesis of proteins serum
( d,
Detoxification of Ammonia &
flippant acid synthesis
Serum
(e)
enzymes (
as
markers )
•
But
nowadays ,
( Fts are
broadly classified as :
hepatocellular or .
Functions of liver :
(I ,
synthetic functions
Metabolic
(21
functions
13 , Detoxification
( 41 Excretion
(5) Homeostasis
(6 ,
storage
its Production g Bile salts
is ,
Help in
digestion og fat
.
Emulsification )
Function
Classification of
liver Tests :
[A ] Based on
laboratory findings :
based liver
(a)
GI ( tests on
Excretory Function ) :
Bilirubin der
cis Semen : Van
Bergh Klan
(4) Urine
urobilinogen fecal stercobilinogen
&
ambition
fecal stereo bilin
(5) Urine & -
b, tests biomarkers
( Groupie ( liver
enzyme panel
:
for liver
injury
and chol esta sis )
Alkaline
( 11
phosphatase ( ALP )
( 21 Serum
glutamate pyruvate transaminase ( SG PT ) / ALT
(3) Serum
glutamate oxalate transaminase ( 5907 ) IAST
4 Gamma
( ,
Glutamyl Transferase ( GGT )
isocitrate
is , Senen
dehydrogenase
(6) Choline esterase
(C '
Gnup ( Tests for synthetic function g
liver ) ( Plasma Proteins )
in Total
proteins
albumin
(2) Serum
g
globulin . Ala Ratio
(3) Prothrombin time
( Gi flocculation test .
concentration
61
Fibrinogen .
(d) 9nI ( specific function test )
anti
(n x -
trypsin (
I AAT )
13 ) Cerrato
plasmin
( 41 Ferritin .
( as
Groep I ( for liver
dysfunction ) [ summary]
(1) Serum bilirubin
121 Serum : Total Protein ,
fecal stercobilinogen
cenobite
.
(bi (
Grey . I Markers of
lil SGPT
hepatocellular
121 5907
injury )
lol
Groep TI
( for cholestasis )
( 11 Jaundice
liver metastasis
as
suspected
(3) Alcoholic liver disease
(
4, Any undiagnosed chronic illness
disorders
16 ,
Coagulation
statins to check hyper toxicity
its
Therapy with .
radical
di
Superoxide anion ( OE )
radical (
iis
Hydro peroxyl Hoo )
.
(
iii ,
Hydrogen peroxide ( 4202)
Hydroxyl radical ( on )
.
civi
""
vii
singlet oxygen ( 021
'
(
Pero xy nitrite ( ON 00 )
°
xiii )
-
Extreme
( as
reactivity
do, short
lifespan
(a
Generation of new Ros
by chain reaction
Clinical significance :
Rheumatoid
(n Chronic
inflammation : Diseases such as
Is
Free Radicals
by Neutrophils
Acute Inflammation site
At the
inflammatory
121 :
,
activated
macrophages produce free radicals .
⑦
Respiratory Disease :
Breathing of loot
.
I,
Destruction Endothelium &
of
edema
buy .
°
9N premature newborn ,
Broncho
prolonged Oz exposure -
pulmonary
dysplasia
( comet )
high
.
.
Adult respiratory distress syndrome CARDS ) is
characterized
by Pulmonary edema .
by Neutrophils
due to
It in
free radicals released
plaque formation .
gradual deterioration in
Ageing process
.
Role of Antioxidants
Two
types of antioxidants
°
:
production of free
radicals .
catalase and
They glutathione peroxidase
°
are .
bi chain antioxidants
(
breaking : -
propagative phase .
• Include -
Superoxide dismutase ,
uric acid .
vit E etc .
Antioxidants :
in Vit E -
(3) Cerullo
plasmin -
Antioxidant in ECF .
Carotenoids
(
4,
cysteine ,
glutathione . ,
flavonoids and Vita
cat
Spices
(
b, cur cumin
di Resveratrol in
(
grapes
.
asparagus ,
green
tea
etc )
② Med Notes (med notes in) .
[ App Available ]
Nucleotides
Chemistry Metabolism
: & .
Introduction :
enzymes
like
-1
and FAD and metabolic
regulators
MAD such
, as cAMP & cGMP .
Composition :
°
3
components -
base (
( as
Nitrogenous a
purine
( bi Pentose
sugar
or a
pyrimidine)
cc , Phosphate groups
.
o Two
types of Nitrogenous base = Purines 4 Pyrimidines .
Purine
byes :
( as
Adenine ( 6 -
amino
purine)
(
b, Guanine ( 2- amino 6- oxo
purine )
O O
T Purine Ring ]
O
•
other minor Purine bases :
( 6- oxo
purine ) ( 2-6 dioxopunk) ( 2-6-8 tri -
oxo
purine)
Pyrimidine Base :
(a) Cytosine
( bi Thymine
(C) Uracil
(
as
Dihydro uracil
(
b, 5
methyl cytosine
-
.
phosphates :
Nucleosides : Nucleotides :
Nucleoside
-
triphosphate :
Nucleosides &
Nucleotides :
Nucleotides
Biosynthesis of Purine :
•
It can be explained in two different pathways :
Novo
(a) De
Pathway
-
Pathway ]
Deone Synthesis :
°
It involves three main steps :
(a) Ribose -
5 -
Ribose
-
- 5- Phosphate to IMP
-
synthesis :
step 1 : Amination
# f
material biosynthesis
-
Ribose
- -
5 -
P in converted into
Phosphor ibosyl pyrophosphate
by Pyro phospho kinase -
step : Addition g
Ng
step 3 :
Incorporation of C4 ,
C 5 and MF
step 4 : Addition g
cs
steps : Addition g
Ns
step 7 : Addition g
CG .
step to : Addition g Cz
steps Addition of Nt
:
slept :
cyclization .
Step 9 : Removal g
Fura mic Acid
IMP to AMP :
-
-
step# :
Adenylo Succinate to amp .
IMP to GMP :
-
-
enzyme
IMP -
dehydrogenase .
( is It ensures the
recycling of Purines formed by degradation of
Nucleotides Nucleosides and deoxy nucleosides also be
safer ;
. -
can
material
cii , PRPP in
starting .
( iii ,
The
free purines are
salvaged by two different enzymes ;
( in The
Pathway in
special importance in tissues like RBC and brain
de not
where Novo
pathway in
operating .
Regulationshee -
is
Degradation of Purine Nucleotides :
The end
product of nucleotide catabolism in acid
purine uric
°
curate )
degradation taking place mainly
.
. The in in liver .
°
Xanthine Oxidase in a
metallo
flavoprotein containing
FAD , molybdenum and Fe .
[ In I
1) eNsof Pyrimidine :
°
The
pyrimidine ring in synthesized free pyrimidine as and
then it in
incorporated into nucleotide .
• The
pathway can be explained by following steps :
of Dihydro
(4 ,
oxidation 0 rotate
Addition
of Ribose Phosphate moiety
⑦ .
161
Decarboxylation to form UMP .
For and
VIP ,
UTP CTP o
.
⑥ MedNmed notes in )
Important Questions g Transcription
① Types og Mammalian RNA
polymerases -
Am : 3
different DNA
dependent RNA
polymerases ( RNAP) -
cis RNAP
type II or B Main
enzyme synthesizing mRNAs .
gnhibited anilin
a
by Am
- -
dis RNAP
type I or A Responsible for syn
.
g rRNA '
( iiis RNAP
type I or c
Responsible for production g tRNA
② Transcription Process .
Am : gt in the
process of formation of RNA
from DNA .
followed by Post -
Transcriptional processing .
( ai Initiation : . gn this ,
DNA helin
partially unwinds .
-
On
reaching appropriate site . first nucleotide
of mRNA attaches to initiation site g
p subunit g RNAP
.
'
-
transcription .
sites are
( b,
Elongation : The RNAP more
along the DNA
-
to rule
one
by one .
according base
pairing
.
Topo
-
isomerase will also help in
unwinding .
.
A transcription bubble
containing RNAP .
DNA &
nascent Bubble
RNA in
formed .
in about 20
bp .
termination
protein the , Rho ( s ) factor .
attaches
lnlhen the Rho factor RNAP cannot
•
move
further .
formed .
Post-transcriptional Processing
bacteria not Translation
• In ,
mRNA in
changed &
of
starters Transcription
mRNA even
before completion g
.
•
In Eukaryotes .
it
undergoes extensive
processing
to
These
modifications include : -
cb , terminus
methyl
by
'
at the
'
7
capping
5 5 -
guanosine triphosphate
Methylation of adenine residue and
hydroxyl
'
( Cl Nb
of 2
ribose
group of are common .
coding regions )
cel
splicing of Exons l connect
together ) .
③ Inhibitors of RNA
synthesis :
[ App Available ]
Environmental Pollution &
Heavy Metal Poisons
introduction :
-
.
Pollutant : -
metabolism
may produce abnormality in or
alter
wellbeing .
living body or
brought in contact .
Strong ,
or .
They remove
•
Neurotoxins : .
Act at cerebral level .
As Opium -
,
alcohol ,
ether ,
cholon form -
,
cannabis -
etc .
( I
feed Poisoning -
°
lead in the most common environmental poison in India
•
About 30%
population are
already affected by lead
poisoning .
.
Can be found in Paints ,
exhaust of Vehicles .
lead
pipes .
newspapers ,
cigarette ,
etc .
Battery repair .
Radiator repair ,
soldering .
Painting &
to
Prinking are
occupations prone get lead
Poisoning .
Signs e
symptoms :
over
years
.
[ 90% in bones ,
9% in blood & I % in brain &
kidney ]
lead
ciii can
pass through placenta &
milk .
Miscarriage ,
still birth
and
premature deaths are
reported in lead
poisoning .
brains susceptible
( iiis
Developing are more to lead .
behaviour
problems hyper excitability and seizures
, are seen .
I"
Anemia ,
abdominal colic and loss
of appetite are
very
common -
acute
( vis g f blood level in more than to
my
1dL ,
toxicity is
manifested .
( vill Discoloration
along the gums
& Blue line are character -
-
skis
features of Acute lead Poisoning .
Treatment :
, .
in
.
Source be Elemental
can
Inorganic Organic mercury
°
, or .
Elemental
Mercury
Hazard inhalation of
°
may
come
from Mercury Vapor -
edema and
o
In acute
poisoning .
pulmonary encephalopathy
result
may
.
Triad
of Oral lesions ( gingivitis salivation stomatitis)
°
ca , &
,
(b) Tremor
cel
Psychological changes ( insomnia shyness , ,
mercury poisoning
.
Inorganic Mercury :
Poisoning may
arise
from calomel .
topical medicines
&
plastic industry
in .
and edema
pulmonary
.
occur
may
.
cosmetics .
in
mercury ,
causes
for organic mercury poisoning .
(3)
Aluminium Toxicity :
materials
°
cooking vessels .
intake
.
If we >
100mg 1 day ,
toxicity results .
°
Osteomalacia and microcytes hypochromia anemia
[ App Available ]
Environmental Pollution &
Heavy Metal Poisons
②
Pesticides & Insecticides :
DD
(m T
(Dichlorodiphenyltrichloroethane )
°
It in
fat soluble and deposited in Adipose tissue .
°
As it is not excreted ,
concentration keeps increasing .
Signs
e
symptoms :
Chronic
toxicity ( exposure affect reproductive
°
can
capabilities and
embryo or
fetus .
banned but it
*
Many countries have
already DDT is
121
Org azo phosphorus Compounds :
common
pesticides .
Sign &
symptoms :
neurotoxic
in
They are
powerful agents .
(2)
They inhibit
Acetylcholinesterase through phosphorylation .
③ Thus
transfer of nerve
impulse across
synapses
and at
nerve muscle junction is
prevented .
°
Bi
phenols from plastic containers teach out in
drinking water .
.
Vinyl phenols are dissolved from Pvc
pipes .
decrease
•
These chemicals will lead to in -
fertility &
alteration in behavior .
dissociated
Release atoms when
photo
cam
chlorine
.
° -
•
chlorine destroys Ozone .
131 Methanol -
freezes .
in
may g more
characteristic
•