Professional Documents
Culture Documents
BACTERIA
BACTERIA
BACTERIA
STREPTOCOCCUS
S.pyogenes Impetigo Penicillin G Cocci in chains Hyaluronidase – cellulitis ASO titer (pharyngitis)
Erysipelas
Cellulitis
Lancefield Group A Exotoxin B –necrotizing Anti-DNAse B (skin)
Necrotizing fasciitis PYR test (+) fasciitis Anti-steptokinase
Scarlet fever Erythrogenic toxin – scarlet Dick test – scarlet fever
SSSS Pyogenic exotoxin A - SSSS
Acute rheumatic fever: JONES
Glomerulonephritis
Group B streptococcus ( S. Neonatal pneumonia, sepsis, Penicillin G Cocci in chains
agalactiae) meningitis, Pen G + Lancefield Group B
(vagina) UTI in pregnant women aminoglycoside CAMP test (+)
Endometritis (serious)
Penicillin or Hydrolyze hippurate
Ampicillin
(prophylaxis) – 4
hours prior deliverys
Group D Streptococci Marantic endocartis Penicillin + cocci in chains
(colon) (s. bovis) Gentamicin Lancefield Group D
Enterococcus Faecalis Endocarditis post-GIT surgery Vancomycin PYR test (+)
Streptococcus bovis Biliary tract infection Linezolid
UTI Hydrolyze esculin in bile-
esculin agar (BEA)
S. pneumonia MC cause of CAP Penicillin G Lancet shaped cocci in pairs Capsule – retards Rust-colored sputum
(upper resp tract) MC cause of otitis media & Levofloxacin/ Prominent polysaccharide phagocytosis Lobar pattern
meningitis Vancomycin + capsule IgA protease – colonization
Septic shock Ceftriaxone ( pen Quellung reaction (+) C-substance – reacts with CRP PREVENTION:
resistant) 23 polyvalent vaccine
Conjugated vaccine
Viridans streptococci S. mutans – dental caries
(oropharynx) S .sanguis – MC cause of SBE
S. intermedius – brain abscess
DISEASES
P. aeruginosa -pubic osteomyelitis in drug abusers
S. pyogenes – necrotizing fasciitis
C. perfringes – gas gangrene
GBS – neonatal pneumonia
L.monocytogenes – granulomatous infant
S. aureus – native endocarditis in IV drug users
S. epidermidis - Prosthetic valve endocarditis
S. pyogenes – rheumatic fever
S. sanguis of viridans – MC cause of SBE
Eikenella corrodens Kingella kingae - culture negative SBE in pre-existing heart disease
S. bovis of group D – marantic endocarditis, endocarditis post GI
E. Coli – MC cause of community acquired UTI
Staph aprophyticus – UTI in sexually active
GBS – UTI in pregnant women
Proteus – UTI assoc with nephrolithiasis, staghorn calculi
P. aeruginosa – 3rd MC cause of nosocomial UTI
Polyoma virus – UTI in immunocompromised (renal transplant)
Adenovirus -
Salmonella choleraesius – septicaemia common in sickle cell or cancer
S. aureus - SSSS
S. pyogenes – SSSS
P. aeruginosa - eccythema gangrenosum, febrile neutropenia: lymphoma/leukemia post chemo/ radiation
S. aureus – Ritter’s disease
B. pertussis - Tuspirina
L. pneumophilia - Pontiac fever
B. anthracis – Woolsorter’s disease
N. meningitides - Waterhouse Friedrichsen syndrome
N. gonorrhoea – Fitz-Hugh syndrome
Pseudominas – green nail syndrome, necrotizing enterocolitis, shanghai fever
Brucella abortus – Undulating fever (dairy products)
Borrelia Burgdorferi – LYME disease, Erythema chronicum migrans
Borrelia Recurrentis – relapsing fever
C. immitis – Valley Fever
GASTROENTERITIS
S. aureus – 4 hours vomiting & diarrhea, salad with mayonanaise, preformed heat stable enterotoxin
B. cereus – 4 hours vomiting, 18 hours watery, nonbloody diarrhea (clostridial AGE-like)
C. perfringes – 8-16 hrs IP, cramps, watery diarrhea & little vomiting, resolves in 24 hrs
s. typhi - 12-48 hrs, n/v, nonbloody diarrhea & abdl pain 12-48 hrs
Shigella – 1-4 days, fever, abdominal cramps, watery-bloody diarrhea, resolves 2-3 days
E. coli – traveler’s diarrhea
G. lamblia – backpacker’s diarrhea
V. cholera – rice, watery stool
PNEUMONIA
GBS – MC cause of neonatal pneumonia, sepsis & meningitis
S. aureus – necrotizing pneumonia, pneumatocele
Klebsiella – necrotizing pneumonia, kurrent jelly sputum, MC cause among alkoholics
S. pneumonia – rust colored sputum, lobar pattern
M. pneumonia - MC type of Atypical Pneumonia, walking pneumonia , MC infectious cause of SJS
Legionella pneumophila - atypical pneumonia acc. by confusion, nonbloody diarrhea, hyponatremia, proteinuria, hematuria, exposure to air condition
Chlamydia pneumonia – atypical pneumonia, associated atherosclerosis
Chlamydia trachomatis – neonatal pneumonia, late-onset (2-4 weeks), staccato cough (paroxysmal cough), striking tachypnea, absence of fever, eosinophilia
Chlamydia psitacci – sudden onset of pneumonia with malaise, fever, sorethroat, photophobia, & severe headache, after bird exposure
P.aeruginosa - ventilator-acquired pneumonia, high-risk CAP: cystic fibrosis, bronchiectasis
Blastomyces Dermatitidis – MC cause of fungal pneumonia (chronic pneumonia)
Paracoccidioides Brasiliensis – chronic pneumonia
P. jirovecii - Diffuse interstitial pneumonia with ground glass infiltrates
MENINGITIS
C. immitis – meningitis
ANTIBIOTICS
Penicillin N. meningitides, S. pyogenes, S. pneumonia, GBS (+Aminoglycoside), T. pallidum, leptospira
Ampicillin L. monocytogenes, C. diphtheria pray(ampo) deep & solo!
Ceftriaxone N. gonorrhoea, H. influenza (Gonna influence the 3?)
Tetracycline Chlamydia (clam with tetra pods?)
Doxycycline Borellia burgdorferi, Brucella abortus, Rickettsia
Macrolides Chlamydia, Legionella, Mycoplasma
Vancomycin S. epidermidis , MRSA
Streptomycin Francisella tularensis, Yersinia pestis
Azithromycin M. avium
Albendazole Ascaris
Mebendazole Trichuris (teacher, asked me to BEND? )
Thiabendazole Capillaria, trichinella (Kapila mgpalit ug tsinelas si THIA?)
Metronidazole B. fragilis ,C. difficile C. tetani, ,E. histolytica ,G. lamblia, T. vaginalis
Praziquantel Schistosomiasis (praise thy snail)
DEC Filariasis(wucheria/Brugia)
Ivermectin Onchocerca volvulus, stronglyloides (strong to oppose despite her cancer, EVERMIRIAM )
Nitazoxamide C. parvum
Nifurtimox T. cruzi (cross to timog)
Suramine + Metarsoprol T. brucei
Gambiense
Rhodensei
TMP-SMX P. jiroveci
Nocardia
CONGENITAL
SYPHILIS Hutchinson triad: Hutchinson teeth, deafness, keratitis
Higoumenaki sign ( unilateral enlargement of the sternoclavicular portion of the
clavicle )
Clutton’s joints (synovitis)
Rhagades (angle of mouth)
Mulberry molars
Snuffles/saddle nose
RUBELLA
Bobo Mental retardation
Bulag Cataracts
Bingi Sensorineural deafness
Butas ang puso PDA
Blue berry muffin syndrome Blue berry muffin baby
GRAM-POSITIVE RODS
B. anthracis Cutaneous: malignant pustule, central Ciprofloxacin Medusa head morphology Edema factor (EF)
(soil) necrosis Box-car like rods Lethal factor (LF)
inhalational: massively enlarged Aerobic Protective antigen (PA)
mediastinal LN Spore forming
GI anthrax Non-motile
Woolsorter’s disease
B. cereus Chinese fried rice syndrome Symptomatic tx Aerobic Heat-labile toxin (cholera-like)
Emetic Vancomycin, Clindamycin, Spore forming Heat-stable toxin (staphy-like)
Diarrheal Ciprofloxacin, Gentamicin - for Motile
Opthalmitis – ↓light perception 48 hrs opthalmitis
C. tetani Tetanus Metronidazole Anaerobic Tetanospasmin – release
(soil) X Penicillin - ↓ glycine activity Terminal spore (Tennis racket) glycine from renshaw cells
C. botulinum Food-borne botulinum Metronidazole Anaerobic Heat-labile neurotoxin
(soil) Floppy baby syndrome (flaccid paralysis- Penicillin Spore forming Toxins A. B, E
descending)
Wound botulinum
C. perfringes Gas gangrene Penicillin Anaerobic Alpha toxin- gAs gangrene,
(soil & human colon) Food poisoning Spore-forming rods lecithinase that cleaves cell
Double hemolysis on blood agar membrane
Growth on egg-yolk agar Enterotoxin – food poison
Non-motile but rapidly spreading
growth
C. difficile Pseudomembranous colitis Metronidazole Anaerobic Exotoxins A & B – inhibits ELISA
▪ clindamycin Vancomycin Spore-forming rods GTPases → apoptosis – detects
▪ 2nd & 3rd gen cephalosporin exotoxin in stool
▪ ampicillin by cytopathic
effect (final
phase)
C. diptheriae Pseudomembranous pharyngitis Penicillin Club or comma shaped Elongation factor 2 (EF-2) Elek test
(human throat) Myocarditis Non-motile ▪ subunit A (ADP-ribosylating)
Chinese characters ▪ subunit B (B-prophage)
Babes-Ernst granules/volutin
granules
Black colonies on tellurite plate
L. monocytogenes Granulomatosis infantiseptica Ampicillin +/- Gentamicin Aerobic Internalin (E-cadherin)
non-spore forming Listeriolysin (phagosome)
Unpasteurized milk V or L-shape arrangement Actin rockets
products Tumbling motility
Cold enhancement
HACEK
Haemophilus aphrophilus
Actinobacillus actinomycetecomitans
Cardiobacterium hominis
Eikenella corrodens
Kingella kingae
GRAM-NEGATIVE RODS
E. coli UTI Ampicillin Facultative rod HST & HLT toxin – watery
MC cause of community 2nd MC cause of Neonatal Sulfonamides Lactose-fermenting colonies on diarrhea
acquired UTI Meningitis 3rd gen cephalosporin – EMB or McConkey agar Verotoxin (shiga-like) –
(human colon) Traveller’s diarrhea meningitis Green sheen on EMB agar bloody diarrhea
Metallic sheen
TSI agar: acid slant & acid butt
(-) H2S
O & H antigens
Salmonella Enterocolitis – n/v, Ceftriaxone Non-lactose fermenting Vi capsular antigen – typhoid Widal test – antibodies
S. typhi nonbloody diarrhea & abdl Ciprofloxacin Produces H2S S. typhi vaccine
S. enteritidis pain 12-48 hrs Philippines: Amoxicillin, XLD (xylose lysine deoxycholate)
Typhoid fever – 5-21 days Chloramphenicol, medium
(human colon) Septicemia - common in Trimoxazole
sickle cell anemia or cancer
Salmonella Cerebritis
Shigella Bacillary dysentery Ciprofloxacin Non-lactose fermenting Enterotoxin (Shiga toxin)
MC cause of bacillary Produce no gas from glucose
dysentery fermentation
(human colon) Do not produce H2S
Nonmotile
Have 0 antigenN
Cultured in XLD medium
Vibrio Cholera – rice watery stool Tetracycline Comma shaped rod Enterotoxin (chloragen) –
V. cholera 01 biotype El Tor – Wound infection Azithromycin Motile ADP ribosylation
pandemic Oxidase (+) Mucinase
V. cholera (human colon) Minocycline + Thiosulfate citrate bile salts
V. parahaemolyticus (raw Fluoroquinolones sucrose (TCBS) agar culture
seafood) Shooting star motility
V. vulnificus (raw shellfish)
C. jejuni MC cause of bacterial Erythromycin Comma-shaped
gastroenteritis Microaerophilic
GBS Skirrow’s agar
Reiter’s syndrome (urethritis,
uveitis, conjunctivitis)
H. pylori PUD Triple or quadruple therapy Curved
Gastric Ca Metro Microaerophilic
MALT lymphoma Clari Urease positive
Tetracycline
PPI
K. pneumonia Necrotizing pneumonia : Cephalosporins LARGE polysaccharide capsule
(upper resp & GIT) thick bloody sputum (currant Aminoglycosides ESBL (extended spectrum beata-
jelly) (culture guided) lactamase) activity in drug
MC cause of pneumonia resistant strains
among alcoholics Urease positive
UTI
Proteus mirabilis UTI assoc with nephrolithiasis TMP-SMX Facultative rod
Staghorn calculi Ampicillin Swarming motility
Struvite stones (MAP) Urease positive
P. aeruginosa Skin & soft tissue infection Anti-pseudomonal penicillin Obligate aerobe Endotoxin
(water) Hot tub folliculitis 3rd & 4th gen cephalosporin Pyocanin-blue green pigment Exotoxin A – tissue necrosis
Burn wound infection Sweet grape-like odor & type III secretion system
Skin-graft loss Cetrimide agar Pyocanin – damage cilia &
Green nail syndrome mucosal cells
Bone & cartilage infections: Verdoglobin
puncture wound
osteomyelitis
Pubic osteomyelitis in drug
abusers
MC cause of otitis externa,
malignant otitis externa in
diabetics, chronic
suppurative otitis externa
Pneumonia: ventilator-
acquired
High-risk CAP: cystic fibrosis,
bronchiectasis
GI: necrotizing enterocolitis,
shanghai fever, peritonitis
undergoing peritoneal
dialysis
Nosocomial UTI
Sepsis: eccythema
gangrenosum, febrile
neutropenia: post chemo
B. fragilis Bowel trauma, perforation or Metronidazole LPS with low endotoxic
(predominant anaerobe of surgery Clindamycin activity
human colon) Abdominal abscess Cefoxitin Capsule ( antiphagocytic
Peritonitis /anticomplement)
Cerebral abscess
Foul-smelling discharge
Short chain fatty acid
products
ZOONOSES
Brucella abortus Undulating fever Doxycycline + Rifampicin Small gram (-) rod without
(dairy product) - cow capsule
Francisella tularensis Ticks (Dermatocentor), aerosols, Streptomycin Small gram (-) rod
(rabbit, deer, rodents) contact, ingestion Gentamicin
Yersinia Pestis Bubonic plague Streptomycin Small gram (-) rod with bipolar
(rodents) –rat Pneumonic Tetracycline (safety pin) staining
Septicemic
Pasteurella multicida Animal bites Penicillin G Short, encapsulated gram (-) rod
(cat) Osteomyelitis With bipolar staining
MYCOBACTERIUM
M. Tuberculosis PTB HRZES Aerobic, acid-fast rods (ZIehl- Exported repetitive protein
(human lungs) Miliary TB Neelsen) Or KInyuon (sulfatides) – prevents
Scrofula High lipid content: mycolic acids phagosome-lysosome fusion
Pott’s disease & wax D Cord factor – MOST important
GI (ileocecal) Produces catalase & niacin virulence factor
Primary complex (Ghon’s Slow growing on Lowenstein-
complex) – middle or lower lobes Jensen medium
Reactivation TB – Simon’s Luciferase assay for drug
focus(apical) resistance
M. avium Pulmonary disease in
immunocompromised host
CD<50
M. leprae Tuberculoid leprosy Dapson + Rifampin Aerobic, acid-fast rods
(mouse footpad/ armadillo) Lepromatous leprosy – leonine Dapson + Rifampin + Clofazamine Can’t be cultured in vitro
facie,
erythema nodosum leprosum Thalidomide
ACTINOMYCES
Actinomyces israelli Sinus tract hard, nontender Penicillin G + drainage Anaerobe
(normal oral flora) swelling draining sulfur granules
Nocardia asteroids Mycetomas TMP-SMX Aerobic, Filamentous gram (+)
(soil) Lung & Brain abscess rods with aerial hyphae
Weakly acid fast
Fite-Faraco stain
MYCOPLASMA
M pneumoniae Walking pneumonia – MC type of Erythromycin Smallest free living organism
(human resp tract) Atypical Pneumonia Azithromycin Not seen on Gram Stain
Steven Johnson syndrome (MC Only bacteria with cholesterol in
infectious cause) cell membrane
Cultured in Eaton’s medium
SPIROCHETES -
Treponema pallidum 1 Syphilis - chancre Penicillin G Coiled spirochete 10 syphilis
(human genital tract) 2 Syphilis – condyloma latwo! Too thin Dark field microscopy
3 syphilis – gumma3, tabes (NOT seen on gram stain) 20 syphilis
dorsalis, dementia paralytica Cannot be cultured in vitro RPR/VLDR (screening)
Congenital syphilis (lacks Krebs cycle) FTA-ABS (confirmatory) –
Jarisch-Herxheimer reaction Microaeropholic absolute! Earliest positive, most
(influenza like symptoms after specific, remains positive longest
penicillin intake)
Borrelia Burgdorferi LYME disease EARLY Weakly staining spirochetes
(white footed mouse & deer) Stages Doxycycline (DOC) LARGEST medically important
1. Erythema chronicum migrans Amoxicillin bacteria
MOT: deer ticks bite 2. Myocarditis (heart block), Cefuroxime Stain well with aniline dyes
(Ixodes scapularis) Meningitis, Bell’s palsy (Giemsa or Wright stain)
3. Autoimmune migratory LATE Cultured on BSK medium
polyarthritis (onion skin lesion) IV penicillin/Ceftriaxone – late
Acrodermatitis chronica
atrophicans,
Borrelia Recurrentis Relapsing fever Tetracycline ------ Microscopy
Erythromycin
MOT: human body louse
(Pediculus humanus)
Leptospira Interrogans Acute leptospiremic phase – calf Penicillin G Thin, coiled spirochete LeptoMAT (microscopic
(wild & domestic animal) tenderness & conjunctival Hook at one or both ends agglutination test) – GOLD
suffusion (shepherds crook) standard
MOT: animal urine Immune leptospiremic phase – Obligate aerobe EMJH – after 2 weeks incubation
IP: 2-20 days aseptic meningitis, pulmo,
hepatic necrosis, GN Doxycycline chemoprophylaxis
Weil’s syndrome: jaundice
(orange cast skin) , bleeding,
uremia, MOST severe form
Massive pulmonary
haemorrhage! – MC cause
ofdeath
CHLAMYDIA
C. trachomatis Trachoma (types A-C) – conjunctivitis Azithromycin – STD Halberstadter-Prowazek inclusion (seen
MC cause of STD (Types D-K) Eryrthromycin – conjunctivitis in trachoma)
Neonatal pneumonia (Types D-K) Doxycyline – LGV
LGV (Types L1-L3)
C. pneumonia Atypical pneumonia, assoc with
atherosclerosis
C. psitacci Bird fancier’s disease Azithromycin
RICKETTSIAE
RMSF
Ricketsial pox
MISCELLANEOUS BACTERIA
Bartonella henselae Cat-scratch fever Gram (-) rod
Bacillary angiomatosis
Cat bite or scratch
Erlichia Chaffeensis Forms morulae in cytoplasm of
monocytes
Dog tick (Dermacentor)
Gardnella Vaginalis Bacterial vaginosis Whiff test: fishy odor
Clue cells
Facultative gram-variable rod
Haemophilus Ducreyi Chancroid (painful genital ulcer) Small gram (-) rod
Chocolate agar: heme (factor 10)
Yersinia Enterocolitica Mesenteric Adenitis Gram (-) rods
(pseudoappendicitis)
Domestic animals (oral-fecal route)
Klebsiella Granulomatis Donovanosis Azithromycin Encapsulated, pleomorphic gram (-)
Pseudobubo bacillus
Beefy red ulcer (painless) Donovan bodies (bipolar densities) look
like closed safety pins
FUNGI
CUTANEOUS MYCOSES
Dermatophytoses Tinea pedis (athlete’s foot) Local antifungal creams 10% KOH: septate hyphae
TInea unguim Keep skin dry Sabouraud’s agar: hyphae & conida
Tinea corporis Green fluorescence on Wood’s lamp
Tinea cruris
Tinea manum
TInea capitis
Tinea barbae (facial hair)
Malassezia furfur Tinea versicolor (An-An) Miconazole Spaghetti or meatball appearance on
10% KOH
Sporothrix Schenckii Sporotrichosis Itraconazole Dimorphic fungus that lives on
Potassium iodide vegetation
Thorn pick ( rose garderner)
SYSTEMIC MYCOSES
Coccidiodes immitis Valley Fever Ampothericin B Dimorphic fungus
Desert Mumps )erythema nodosum) Itraconazole
Mold in soil Influenza like illness Fluconazole – for meningitis
Inhalation of arthrospores Lung infiltrates, adenopathy or effusions
Latin America & Southwester USA Arthralgias
Meningitis
Histoplasma capsulatum Closely mimics Tuberculosis! Ampothericin B Dimorphic fungus
Chronic Pneumonia Itraconazole Asexual spores:
Soil contaminated with bird droppings Erythema nodosum Fluconazole – for meningitis Tuberculate macronidia
Starlings or bat guano Tongue ulceration in AIDS patiens Micronidia
Ohio & Mississippi River valleys
Blastomyces dermatitidis MC cause of fungal oneumonia Itraconazole (DOC) Round yeast with broad based bud
(chronic pneumonia) Ampothericin B
Eastern North America (ohio & Missippi) Ulcerated granulomas
Lytic bone lesions
Prostatitis
Paracoccidioides Brasiliensis Chronic pneumonia Itraconazole (DOC) Captain’s wheel (multiple buds in wheel
Painful ulcers on mouth & nose configuration)
OPPORTUNISTIC MYCOSES
Candida albicans Oral thrush Nystatin swish & swallow Oval yeast with single bud or
Vulvovaginits (curf-like discharge) Clotrimoxazole (skin infection) pseudohyphae
Normal flora of URT, GIT, FGUT Skin infection (satellite lesions) Ampothericin B (disseminated Form germ tubes in serum & chlamydo-
Onychomycosis candidiasis) spores in culture
Pseudomembranous esophagitis Fluconazole (chemoprophylaxis)
Subcutaneous nodules
Right sided endocarditis
Cryptococcus Neoformans Asymptomatic lung infection Ampothericin B & FLucytosine India ink
Meningitis CALAS (+) latex agglutination test
Soil (pigeon droppings) Encephalitis
Aspergillus Fumigatus Fungus ball in lung cavities Ampothericin B V-shaped (dichotomous) branches
ABPA (allergic bronchopulmonary
Molds (nature) aspergillosis)
Infections: wound, burns, cornea,
external ear, sinuses
Rhizopus Oryzae & Mucosa Rhino-orbital-cerebral infection with
eschar formation
DKA, burn & leukemia
P. jiroveci MC AIDs defining illness (<200) TMP-SMX Indeterminate organism
Diffuse interstitial pneumonia with Programmed rearrangement
ground glass infiltrates