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Advanced Bioconductor Help PLNYAN001
Course Progress Dates Discussion Data Analysis for Life Sciences Series FAQ

Advanced Bioconductor
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Pre-Course Survey
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Section 1: Visualization of genome-scale data resumé
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Section 1 overview activities, including graded
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Visualizing NGS data (9 Questions) Full access to course content and
Homework due Oct 26, 2023, 10:48 PM GMT+2 materials, even after the course
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Verified assessment: Genome-scale visualization
Verified Assignment due Oct 26, 2023, 10:48 PM GMT+2
 Important dates
Section 2: Reproducible analysis and building Thu, Oct 26, 2023
packages Visualizing NGS data
Section 2 overview Wed, Nov 15, 2023
Audit Access Expires
Conceptual overview on reproducibility (3 Questions) You lose all access to this course, including
Homework due Oct 30, 2023, 10:48 PM GMT+2 your progress.
knitr and literate statistical analysis and presentation (3 Mon, Nov 20, 2023
Questions) Verification Upgrade Deadline
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Package design and creation (4 Questions) Certificate! Pursue it to highlight the
Homework due Oct 30, 2023, 10:48 PM GMT+2 knowledge and skills you gain in this
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Verified assessment: Reproducible analysis and building Upgrade to Verified Certificate
packages Wed, Nov 29, 2023
Verified Assignment due Oct 30, 2023, 10:48 PM GMT+2 Course ends
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Section 3: Using R with external data will be archived and no longer active.
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Section 3 overview
Course Handouts
Relational databases (1 Question)
Homework due Nov 3, 2023, 10:48 PM GMT+2
HDF5 and GenomicFiles (5 Questions)
Homework due Nov 3, 2023, 10:48 PM GMT+2
Tabix-indexed genomic data (2 Questions)
Homework due Nov 3, 2023, 10:48 PM GMT+2
Verified assessment: Using R with external data
Verified Assignment due Nov 3, 2023, 10:48 PM GMT+2

Section 4: Multi-omic data integration

Section 4 overview
Integrative analysis: basic examples (10 Questions)
Homework due Nov 7, 2023, 10:48 PM GMT+2
Integrative analysis: exploring TCGA data (8 Questions)
Homework due Nov 7, 2023, 10:48 PM GMT+2
Verified assessment: Multi-omic data integration
Verified Assignment due Nov 7, 2023, 10:48 PM GMT+2

Section 5: Analyzing cloud-scale ENCODE data

Section 5 overview
ENCODE ChIP-seq data (6 Questions)
Homework due Nov 11, 2023, 10:48 PM GMT+2
ENCODE ATAC-seq data (13 Questions)
Homework due Nov 11, 2023, 10:48 PM GMT+2
 ENCODE CRISPRi RNA-seq data (11 Questions)
Homework due Nov 11, 2023, 10:48 PM GMT+2
Coda: Working with ENCODE data
End of Course Survey
End of Course Survey
Data Analysis for Life Sciences Series

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