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Particuology 79 (2023) 27e34

Contents lists available at ScienceDirect

Particuology
journal homepage: www.elsevier.com/locate/partic

Positive and negative effects of graphite flake and monolayer


graphene oxide templates on protein crystallization
Zhichun Lin a, Wenqing Tian a, Yang Su b, Vikash Kumar Yadav c, Huaiyu Yang a, *
a
Department of Chemical Engineering, Loughborough University, Loughborough, LE11 3TU, UK
b
Institute of Materials Research, Tsinghua Shenzhen International Graduate School, Tsinghua University, Shenzhen, 518055, China
c
Human Sciences Research Centre, University of Derby, DE22 1GB, UK

a r t i c l e i n f o a b s t r a c t

Article history: Heterogeneous template-induced nucleation is a promising way to regulate protein crystallization events
Received 12 August 2022 and could be employed for purification processes and crystallographic studies. Protein crystallization
Received in revised form process with graphite and graphene oxide, as heterogeneous templates, were investigated. More than
10 October 2022
640 hanging drops with different concentrations of Lysozyme (30, 50, 70, 100 mg/mL) and NaCl (0.7, 0.9,
Accepted 27 October 2022
Available online 11 November 2022
1.1, 1.3, 1.5 M) were crystallised at 4  C with or without graphite/graphene oxide templates. The induction
times and crystallization process were observed under the microscope. The lysozyme in the solutions
with graphite flakes nucleated faster under all the conditions than the lysozyme with equal experimental
Keywords:
Graphite
conditions without templates. The crystals preferred to grow around the edge of graphite flakes than on
Graphene oxide the flat surfaces. In the droplets with monolayer graphene oxide, more crystals appeared around gra-
Protein crystallization phene oxide particles, and the faster or slower nucleation processes with templates were dependent on
Adsorption the lysozyme and NaCl concentrations. Graphene oxide templates strongly inhibited nucleation at high
Heterogeneous nucleation lysozyme concentrations but promoted nucleation at low lysozyme concentrations. Both heterogeneous
Template technology templates changed the crystal morphology and the crystallization kinetics. More crystals were observed
in the solution with graphite templatesthan with graphene oxide templates and without any template.
© 2022 Chinese Society of Particuology and Institute of Process Engineering, Chinese Academy of
Sciences. Published by Elsevier B.V. This is an open access article under the CC BY license (http://
creativecommons.org/licenses/by/4.0/).

1. Introduction nanoparticles (Hodzhaoglu et al., 2008)), soft templates (such as


bubbles (Tian et al., 2021), live cells (Sun et al., 2022), and DNA
Purification is an essential step in the protein production pro- (Zhang et al., 2018)) have also been reported in improving the
cess, especially in biopharmaceuticals, which can account for more crystal structure (McPherson & Shlichta, 1988) and increasing the
than half of the total production cost (Saikumar et al., 1998) in the crystal numbers (Tian et al., 2021). Heterogeneous nucleation,
biomanufacturing process. Proteins are highly fragile and suscep- occurring on the heterogeneous surfaces in solution, allows a lower
tible to temperature, pH and other external factors (Chen et al., nucleation free energy and a faster nucleation rate than that of
2020), therefore a suitable purification method is significant. Pro- homogeneous nucleation (Jara et al., 2019; Tanaka & Iijima, 2014). A
tein crystallization technology is an economic and effective method variety of carbon nanomaterials have also been proved to expand
in the purification process of protein products, which can obtain the metastable range of crystallization (Govada et al., 2016). The
single crystals with high purity (Hodzhaoglu et al., 2008; Saikumar crystal form at the heterogeneous interface can be changed
et al., 1998). Protein crystallization still has many challenges, such (Tsekova et al., 2012).
as slow nucleation and crystal growth rates. In addition to the Carbon-based materials, such as graphene (Tanaka & Iijima,
traditional methods of reducing solution supersaturation such as 2014), carbon black and carbon nanotubes (Sun et al., 2022), have
cooling, evaporation and extraction, heterogeneous templates, such been applied in protein crystallization as templates to accelerate
as hard templates (such as silica (Chen et al., 2020) and gold the crystallization process. Graphite material has attracted re-
searchers’ attention because of its special structure. Graphite is only
composed of sp2 hybrid carbon atoms (Jara et al., 2019) and has
* Corresponding author. plenty of p electrons. It is often used as electrode material and
E-mail address: H.yang3@lboro.ac.uk (H. Yang). lubricant. Graphene oxide (GO) has covalently connected

https://doi.org/10.1016/j.partic.2022.10.014
1674-2001/© 2022 Chinese Society of Particuology and Institute of Process Engineering, Chinese Academy of Sciences. Published by Elsevier B.V. This is an open access article
under the CC BY license (http://creativecommons.org/licenses/by/4.0/).
Z. Lin, W. Tian, Y. Su et al. Particuology 79 (2023) 27e34

hydrophilic and hydrophobic areas, which makes it an amphiphilic The graphite flake and monolayer graphene oxide samples were
material (Wang et al., 2022). Surface hydrophilicity leads to the characterised with SEM (JSM-7100F), EDS (Oxford Instruments)
wetting of solid nucleolus surface, facilitating the nucleation. It was and AFM (Bruker Dimension Icon) for monolayer graphene oxide.
reported that GO templates can promote crystallization of catalase 1 mL of precipitant was added into each well in a 24-well plate
due to the synergistic interaction between GO and cations (Zou (ThermoScientific Nunclon Delta Surface). The hanging droplets
et al., 2019). Enzyme and protein molecules can also be directly shown as Fig. 1(a) mixed with 1.5 mL lysozyme solution with 1.5 mL
immobilized on GO because of the functional groups on its surface precipitation solution as Fig. 1(b). For the crystallization with
and the partial graphitic structure (Zhang et al., 2013). templates the graphite flake (200e500 mm) or the GO suspension
Lysozyme is a cationic protein in the human respiratory tract (1e5 mm) were premixed with percipient solution shown as
and is widely distributed in animals, plants, and microorganisms Fig. 1(c) and (d) respectively, before the precipitation solution
(Grosfils & Lutsko, 2021). As a natural bactericidal, lysozyme can mixed with the lysozyme solution. There were four droplets on
degrade the cell membrane to destroy and kill bacteria. Lysozyme is each cover slide with and without template in the solution. The
a small 129 amino acid long monomeric protein stabilized by four coverslip was carefully inverted above the reservoir and sealed it
intramolecular disulfide bonds. It is a non-toxic, harmless, and safe tightly with grease to ensure the closure of the system. The hanging
protease (Liu et al., 2007). The enzyme is active over a broad pH droplets were kept in an incubator (VWR INCU-Line 150R) at 4  C
range (6.0e9.0). At pH 6.2, maximal activity is observed over a and observed under optical microscope (GT Vision GTC-20) with
wider range of ionic strengths (0.02e0.100 M). It was reported that observation intervals of 30 min in the first 2 h and every hour
a-helices appear to be somewhat more robust than b-sheets upon subsequently. The time to observe first crystal in one droplet was
adsorption on graphite and GO would significantly changes sec- recorded, and the average nucleation time of the droplets (average
ondary and tertiary structures of the protein, forming a more stable 12 droplets for each condition) under same experimental condition
hybrid complex. Hydrogen bonding interaction was also reported with and without templates was compared. The droplets with
between lysozyme and carbon nanotubes (Li et al., 2022; Raffaini & graphite templates and crystals at the end of experiments were
Ganazzoli, 2010; Wang et al., 2022). However, the influence of observed under UV microscope (Nikon Eclipse TE-300).
graphite and GO templates on the protein crystallization and the The solution of hanging droplets with lysozyme crystals and
mechanism are not fully understood. templates was transferred on the silicon wafer carrier. A filter paper
In this study, lysozyme was chosen as a model protein due to its was used to absorb the droplet solution on the silicon wafer. The
robust crystallization process and simple crystallization conditions remaining crystals and templates on the silicon wafer were air-
(Grzesiak & Matzger, 2008). Most of the crystallization work with dried and coated with Pd, which was observed by scanning elec-
heterogeneous templates were reported to have positive influence tron microscope (JSM-7100F).
on the crystallization, such as enhancing the nucleation by
decreasing the nucleation free energy. In this research, graphite 3. Results and discussions
flake and monolayer graphene oxide were chosen as heteroge-
neous templates for lysozyme nucleation. Effects of two types of Figs. 2 and 3 show a trend that with the increase of the NaCl
templates have been investigated with lysozyme concentrations concentrations or lysozyme concentrations, nucleation time
from 30 to 100 mg/mL and precipitant (NaCl) concentrations from reduced, which was consistent with literatures (Lin et al., 2017).
0.7 to 1.5 M in an incubator at 4  C. The induction time and Fig. 2 shows that the nucleation times in the droplets with graphite
nucleation number were determined, and the crystal shape and templates were all shorter (with average of 57% less) than those
surfaces were observed by SEM and UV microscope. However, in without under equal conditions of salt and protein concentrations.
this work, the positive and negative influences were observed with The nucleation rate could be accelerated up to double with graphite
templates dependent on the crystallization conditions. templates in the droplet. Comparing the droplets with same lyso-
zyme concentration at 30 mg/mL, the difference of nucleation rates
2. Experimental increased with increase in the NaCl concentrations. Comparing the
solutions with same NaCl concentration at 0.7 mg/mL, the differ-
2.1. Materials ence of nucleation times increased with increase in the lysozyme
concentrations. The influence (absolute period difference) was
Hen egg white lysozyme (around 70,000 units per mg), Sodium more significant at low protein and salt concentrations, up to 5 h.
acetate (assay >99%), acetic acid (>99.5%) and NaCl (>99.5%) were
purchased from Sigma-Aldrich. The graphite flake with a nominal
diameter of few hundreds of micrometers was purchased from
Sigma-Aldrich. Buffer solutions were prepared by adding sodium
acetate solid powder into 0.1 M acetic acid, adjusting the pH to 4.2.

2.2. Methods

Lysozyme solutions with concentrations of 30, 50, 70, and


100 mg/mL, were prepared in the buffer solution. The protein
concentration has been verified by measuring the absorbance in
the UVevis spectrophotometer (Thermo Scientific™ Nanodrop
One©). The precipitant was the buffer solution with NaCl concen-
trations of 0.7, 0.9, 1.1, 1.3, and 1.5 M All solutions were filtered
through a 0.2 mm cellulose acetate filter (Whatman) and stored in
the incubator at 4  C. The monolayer graphene oxide (diameter
<5 mm and thickness ~1 nm) was prepared by a modified Hummers’
method followed with mild sonication and centrifugation (Zhao Fig. 1. Hanging drop crystallization method (a), without templates (b), with graphite
et al., 2010). Zeta potential of GO templates were about 42 mV. templates (c), and GO templates (d).

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Z. Lin, W. Tian, Y. Su et al. Particuology 79 (2023) 27e34

Fig. 2. (a) Nucleation time of lysozyme in the solution with Graphite templates (black columns) and without (yellow columns), with lysozyme concentration of 30e100 mg/mL and
NaCl concentration of 0.7e1.5 M. (b) The percentage of nucleation time reduced by adding graphite templates in the droplets than those without template. (For interpretation of the
references to colour in this figure legend, the reader is referred to the Web version of this article.)

Fig. 3. (a) Nucleation time of lysozyme in the solution with GO templates (black columns) and without (yellow columns), with lysozyme concentration of 30e100 mg/mL and NaCl
concentration of 0.7e1.5 M. (b) The percentage of nucleation time reduced by adding GO templates in the droplets than those without template. (For interpretation of the references
to colour in this figure legend, the reader is referred to the Web version of this article.)

When protein and salt concentrations were higher, the nucleation same crystallization time. Under high protein concentrations, more
times all decreased so the absolute period differences were not than 70% of droplets with graphite templates resulted in more
obvious, but the difference of nucleation time in percentage could crystals. At high NaCl concentration, there were up to 100 times
still be high as over 70% under most conditions with high more crystals in the droplets with graphene template than those
supersaturations. without templates at the equal crystallization time.
Fig. 3 shows complex influences of graphene oxide on the The impurity contents in GO and graphite templates were
nucleation process, dependent on the concentrations of lysozyme determined by energy-dispersive X-ray spectroscopies. The results
and NaCl. With concentration of lysozyme 30 mg/mL in the solu- shown in Fig. 4(d), (e) and (f) indicate the impurities in both GO and
tion, nucleation was promoted by adding GO templates. However, graphite template samples were very limited, only about 3%, with
with higher concentrations of lysozyme in the droplets, the similar quantity for each element of Na, K, Mn. Therefore, the huge
nucleation was hindered in most conditions. In most of the cases, differences of the crystal numbers in the droplets with the GO and
with same concentration of NaCl in the droplet, the nucleation time graphite templates were not linked to the difference of the impu-
was shorter with GO templates than those without at low con- rities in these templates.
centration of lysozyme. Interestingly, with higher concentration of In almost all the droplets with graphite templates, there were
lysozyme the differences of nucleation time became similar and many crystals observed on the edge of the graphite flakes. In 40% of
then the trend turned opposite as the nucleation rate was slower in droplets with graphite templates, small crystals form a crystal layer,
equal concentration of NaCl. Only when salt concentration was like a thick film, covering all the edges of the graphite flakes shown
1.1 M, GO promoted nucleation with all range of lysozyme con- in Fig. 5(a). With high salt and protein concentration, more than
centrations. In other cases, the effect become opposite when lyso- 60% of droplets presented this phenomenon on the graphite tem-
zyme concentrations were over 50 mg/mL. It is noted that with plates. The small crystals fast nucleated and agglomerated on the
0.9 M and 1.5 M NaCl in the droplets, GO templates hinder the edge of the graphite templates, and then the crystal film grew
nucleation rates in the solution with all range of lysozyme con- thicker. The crystal not attached on the graphite templates all had
centrations above 30 mg/mL. tetragonal shape. Similar phenomena have been reported, such as
Graphite and GO templates lead to more crystals in 90% of the fat crystals starting nucleation on the surface of graphite and
droplets than those with equal condition without templates, shown forming thin plate crystals (Sun et al., 2014). Fig. 5(c) shows the
in Fig. 4. There were more crystals inside the droplets with gra- protein crystals observed under UV microscope. The protein crys-
phene oxide template in the droplets than those without during the tals on the graphite template, which were not able to be observed

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Z. Lin, W. Tian, Y. Su et al. Particuology 79 (2023) 27e34

Fig. 4. Optical microscope images of crystals in the droplets without template (a), with GO templates (b), and graphite templates (c) in the condition of pH ¼ 4.2, 1.1 M NaCl, and
70 mg/mL lysozyme at 1 h. (d) Elemental compositions of GO and graphite templates. Energy-dispersive X-ray spectroscopies for GO (e) and graphite templates (f).

Fig. 5. Optical microscope image (a), SEM image (b), and UV microscope image (c) of the lysozyme crystals from the droplets with graphite template.

under optical microscope, were highlighted under UV microscope possible reason is that the edges of graphite was rough, providing
due to the biomolecules fluoresce when illuminated with UV ra- more heterogeneous sites for the nucleation, which was in agree-
diation. There were much more crystals grown closed to the edge of ment with the previous reports that the roughness of material lead
the graphite flakes than those on the flat sheet at a distance from to faster nucleation in different systems (Grosfils & Lutsko, 2021;
the edge areas, which was consistent with the SEM images shown Liu et al., 2007). The bonds on the edge of graphite flake with CeC
in Fig. 5(b). bonds were different with the interactions on the flat sheet side,
It is obvious that the lysozyme preferred to nucleate and grow at which were van der Waals bonding. The flat sheet surface and the
the edge of graphite flakes rather than on the flat sheet side. The edge were both hydrophobic, but the breakage of CeC bonds may

30
Z. Lin, W. Tian, Y. Su et al. Particuology 79 (2023) 27e34

be more attractive to protein molecules, contributing to a favour- surface with GO templates in the solution were rough with many
able nucleation cite for lysozyme crystallization. The preference of defects, shown in Fig. 6. It is interesting to observe that at low su-
the nucleation cites can be used to design the selective crystalli- persaturation, the GO templates settled in the middle areas of the
zation process and the interactions between the edge of the droplets (due to long induction time), the crystals had highly rough
graphite flake with the proteins can be potentially used to func- and potholed surface, shown in Fig. 6(b). However, the crystals
tionalize the graphite edges and surface. formed in the outer areas still had good smooth surface as normal
The lysozyme preferred to nucleate around GO templates. lysozyme crystals obtained without templates, indicating the rough
Fig. 6(a) shows that with low concentration of the lysozyme and surface is influenced much largely by the growth step than the
NaCl, the GO templates settled in the middle region of the droplets, nucleation step.
where lysozyme nucleated first, and the most lysozyme crystals While at high supersaturation, the nucleation occurred fast and
were observed. The same phenomena were consistent in most of crystal grew with GO templates around, and therefore, the defects
the droplets with low concentration of the lysozyme or NaCl, due to appeared on nearly all the crystals surfaces. Comparing Fig. 6(d)
sufficient time (more than 5 h) for settling down of the GO tem- and (e), it was confirmed that the defect in Fig. 6(d) was the GO
plates at low supersaturation before nucleation. With high super- templates enfolded inside the crystals. Fig. 6(e) and (f), SEM and
saturation, the nucleation occurred before the GO templates settled AFM images of GO templates, in show the sizes of GO templates
down in the middle region of the droplet, and the crystals were were all below 5 mm. Fig. 6(g) and (h) show the height profiles of
more uniformly distributed in the droplets, shown in Fig. 6(b). two GO template samples, and these two GO nanosheets had an
GO templates attracted lysozyme molecules due to the elec- average thickness between 1 and 1.5 nm, suggesting the monolayer
trostatic interaction and large amount of oxygen functional groups nature of the graphene oxide templates. Except of the enfolded GO
(Jewel et al., 2015). The adsorption of lysozyme molecules on GO templates inside and on the surface of the lysozyme crystal, most of
template was reported, which can be reversed by adding alkali the crystal surface kept smooth and the crystals had normal and
(Grzesiak & Matzger, 2008), indicating the influence of the pH on tetragonal shape.
the electrostatic interactions. The properties of lysozyme crystals

Fig. 6. Lysozyme crystals from droplets with GO templates in the condition of 0.7 M NaCl and 50 mg/mL lysozyme: microscope image (a) and SEM image of a single crystal example
(c), and in the condition of 1.5 M NaCl and 100 mg/mL lysozyme: microscope image (b) and SEM image of a single crystal example (d). SEM (e) and AFM (f) images of the monolayer
GO templates with height profile of GO sample (i) and (ii).

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Z. Lin, W. Tian, Y. Su et al. Particuology 79 (2023) 27e34

The density of the GO templates in Fig. 6(a) has more concen- positive effect only with 1.1 M salt concentration, shown in Fig. 7(a)
trated distribution (concentrated in the middle of the droplet) than and more experiments were repeated to confirm that the phe-
that in Fig. 6(b) (distributed in the whole droplet), and more tem- nomenon did not randomly appear. A similar trend was reported,
plates around the crystal during the crystal growth led to the that with increase of the NaCl or MgCl2 concentration, increase or
rougher crystal surface in Fig. 6(a) and (c). The defects of lysozyme decrease influences for crystallization of protein catalase in the
were also reported with nano graphite templates, and the nano solution with GO templates (Zou et al., 2019). The same GO tem-
graphite have been grown included inside the lysozyme, without plates were used in all the experimental conditions with different
change the structure of the molecular unit cell of lysozyme crystal salt concentrations. The elementary impurities existed in all the
(Gully et al., 2012; Kang et al., 2022). The bioavailability of these experiments, but they were very limited and the concentrations
crystals was not determined, due to insufficient amount of crystals were similar in all the experiments. One of the possible reasons can
obtained in the hanging drop experiments. Nearly all of the crystals be the special electrostatic interactions at 1.1M salts, and the 3D
obtained in this work were tetragonal shape (Grzesiak & Matzger, structure of protein molecules adjusted by the free cations in so-
2008), expected to be same form and conformation. lution is coincidentally similar to the crystalline structure (Zhao
Two interesting phenomena were observed, first is the unex- et al., 2010), leading to a favourable effort on nucleation. But the
pected favourable effect of GO template only at 1.1 M salt solution. mechanism is not fully understood, and the literature and the
Overall, there was an increasing positive influences of graphite current work revealled the complicated influence by combination
template (shorter induction time in the droplets with templates of the influence of ion, GO, and pH, which needs further in-
than those without template) on nucleation with NaCl concentra- vestigations. Fig. 7(b) shows the difference of the influence be-
tions from 0.7 M to 1.5 M, shown in Figs. 3 and 7. Lysozyme mol- tween two templates increased with increase in the concentration
ecules with buffer pH of 4.2 have the isoelectric point of 11 [30], of lysozyme concentrations. With graphite templates, the induction
indicating a positive charge in the droplets. Graphite with negative times all increased in the droplets compared with those without
charges (Li et al., 2014) in the droplets lead to electrostatic in- templates, and the influence tended to increase with increase in the
teractions with lysozyme, contributing to the adsorption of the lysozyme concentration. With GO templates, the stronger negative
protein molecules on the surface, especially the edge of the effects were observed with high concentration of lysozyme, and the
graphite flake. Lysozyme has a strong initial adsorption on the effects tended to be weaker with decrease of the lysozyme con-
hydrophobic graphene surface and protein chains are usually ar- centration. It is noticed that at very low concentration, the GO
ranged in parallel to each other to optimize the intramolecular templates had some extent of positive influences. This work
potential energy, resulting in a very stable final state (Gully et al., demonstrated the complicated interactions between the graphite
2012). The adsorption process was reported to be irreversible [33]. and GO templates with lysozyme and salts in the solution, more
However, GO templates inhibited nucleation (longer induction protein systems are worth to be investigated in the future for better
time in the droplets with templates than those without template) understanding these interactions.
in most of the conditions, requiring longer induction times The second interesting observation was a special patten of
compared with that without templates. GO templates have crystals appearing in the droplets with the graphite template. In
adsorption ability to the macromolecules (Mücksch & Urbassek, almost all cases without templates and with GO templates, the
2016; Sun et al., 2014). As adsorption of molecules would in- crystal located in the droplets randomly distributed and overall
crease the local concentration of the solute and increase the uniformly around the whole droplet. It was noted that in many
probability of molecule collision (Chen et al., 2020), leading to a cases with graphite templates the distribution of crystal in the
faster nucleation. However, a much stronger interactions between droplets was not random. Fig. 8 shows that there were significantly
the GO templates and protein molecules, due to the function more crystals on one side of the template in the droplet than in
groups, C]O and eOH, would reduce the mobility of the protein other regions.
molecules on the template surface (Chaudhary et al., 2021), in- It was observed in over 60% droplets with a nucleation time
crease the difficulty level of forming the correct arrangements for between 0.5 and 3 h had such special patten. In the droplets with
forming the nuclei, which probably be a reason for the inhibiting very low and very high supersaturation (very short and very long
effects of GO templates on nucleation. It is surprising to observe the nucleation time), there were limited number of crystals and very

Fig. 7. Induction time changes (average value of percentage differences) in groups with equal concentration of NaCl (a) or lysozyme (b), comparing the droplets with templates to
the droplets without templates.

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Z. Lin, W. Tian, Y. Su et al. Particuology 79 (2023) 27e34

Fig. 8. Optical microscope images of ununiformly distributed crystals in the droplets with one graphite template (a), two graphite templates (b) and without template (d) in the
condition of 1.3 M NaCl, 50 mg/mL lysozyme, with graphite template (c) in the condition of 1.1 M NaCl, 100 mg/mL lysozyme.

crowed crystals around the droplets, respectively, which was Declaration of competing interest
difficult to distinguish such pattern. In order to understand the
phenomena, we tried to put two graphite templates in the droplets, There are no conflicts of interest.
however, the probability of this phenomenon was not increased,
and no obvious regulation has been found, as shown in Fig. 8(b). Acknowledgements
The proposed mechanism was that graphite could probably affect
the distribution of charge and ions in the solution, influence the Z. Lin and W. Tian would like to acknowledge school of AACME,
local supersaturation of the droplets, inducing preferable locations Loughborough University, and V. Yadav and H. Yang are grateful to
for nucleation. The mechanism needs to be further investigated, the UK EPSRC (Engineering and Physical Sciences Research Council)
which can be used to design the crystallization locations and con- for support (EP/T005378/1). The authors acknowledge use of the
trol the protein crystallization process. facilities and the assistance of Sam Davis in the Loughborough
Materials Characterisation Centre.

4. Conclusion References

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