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AIDS Research and Therapy
AIDS Research and Therapy
Abstract
Background: CD4 cells are a type of white blood cells that plays a significant role in protecting humans from infec-
tious diseases. Lack of information on associated factors on CD4 cell count reduction is an obstacle for improvement
of cells in HIV positive adults. Therefore, the main objective of this study was to investigate baseline factors that could
affect initial CD4 cell count change after highly active antiretroviral therapy had been given to adult patients in North
West Ethiopia.
Methods: A retrospective cross-sectional study was conducted among 792 HIV positive adult patients who already
started antiretroviral therapy for 1 month of therapy. A Chi square test of association was used to assess of predic-
tor covariates on the variable of interest. Data was secondary source and modeled using generalized linear models,
especially Quasi-Poisson regression.
Results: The patients’ CD4 cell count changed within a month ranged from 0 to 109 cells/mm3 with a mean of
15.9 cells/mm3 and standard deviation 18.44 cells/mm3. The first month CD4 cell count change was significantly
affected by poor adherence to highly active antiretroviral therapy (aRR = 0.506, P value = 2e−16), fair adher-
ence (aRR = 0.592, P value = 0.0120), initial CD4 cell count (aRR = 1.0212, P value = 1.54e−15), low household
income (aRR = 0.63, P value = 0.671e−14), middle income (aRR = 0.74, P value = 0.629e−12), patients without cell
phone (aRR = 0.67, P value = 0.615e−16), WHO stage 2 (aRR = 0.91, P value = 0.0078), WHO stage 3 (aRR = 0.91, P
value = 0.0058), WHO stage 4 (0876, P value = 0.0214), age (aRR = 0.987, P value = 0.000) and weight (aRR = 1.0216,
P value = 3.98e−14).
Conclusions: Adherence to antiretroviral therapy, initial CD4 cell count, household income, WHO stages, age, weight
and owner of cell phone played a major role for the variation of CD4 cell count in our data. Hence, we recommend
a close follow-up of patients to adhere the prescribed medication for achievements of CD4 cell count change
progression.
Keywords: CD4 cell count change, Longevity, HAART, Quasi-Poisson regression, Negative binomial regression
*Correspondence: bisrategebrail@yahoo.com
1
Department of Statistics, Bahir Dar University, Bahir Dar, Ethiopia
Full list of author information is available at the end of the article
© The Author(s) 2016. This article is distributed under the terms of the Creative Commons Attribution 4.0 International License
(http://creativecommons.org/licenses/by/4.0/), which permits unrestricted use, distribution, and reproduction in any medium,
provided you give appropriate credit to the original author(s) and the source, provide a link to the Creative Commons license,
and indicate if changes were made. The Creative Commons Public Domain Dedication waiver (http://creativecommons.org/
publicdomain/zero/1.0/) applies to the data made available in this article, unless otherwise stated.
Seyoum et al. AIDS Res Ther (2016) 13:36 Page 2 of 10
the questionnaires. The data extraction tools and variables point of view depends on mean–variance relation [20].
included in the analysis were pre-tested for consistency of In over-dispersed Poisson model, an extra parameter is
understanding, review of tools and completeness of data included which estimates how much larger the variance is
items on 45 random charts. Based on the pilot data result, than the mean [21]. This parameter estimate is then, used
the necessary amendments were made on the final data to correct the effects of the larger variance on the P val-
extraction format. The retrieval process was closely moni- ues [22]. In the over-dispersed distribution, one alternative
tored by the principal investigator throughout the data approach to fit extra dispersion parameter which accounts
collection period. Both predictor and response variables for that extra variance is a Quasi-Poisson model. It has two
were checked regularly for completeness of information. parameters, namely mean, μ and over-dispersion param-
Any problem traced was immediately communicated to eter θ such that variance is a linear function of mean [23].
data collectors for giving corrections. Hence for random variable y that follows Quasi-Poisson
distribution, we have
Variable of interest
The variable of interest for this study was CD4 cell count
E y = µ and
change per mm3. The response variable was count data.
(3)
var y = ∅ E(Y ) = ∅ µ
provided all other elements are zero. The mean-weight Data analysis
relation that exists in model Eq. (6) provides us with full The variables under study were summarized using
comparison between Quasi-Poisson and negative bino- descriptive statistics such as median for continuous
mial models where Quasi-Poisson weights are directly variable and proportions for categorical variables. The
proportional to the mean and have concave relation to data was also analyzed using generalized linear models
the mean of negative binomial [20]. using Quasi-Poisson regression model. The mean–vari-
Therefore, the two models, Quasi-Poisson and nega- ance relation, information criteria and the value of Chi
tive binomial regression models; are to be considered square divided by its degree of freedom were used to
as potential candidates for fitting over-dispersed data. select the model that fits the data appropriately. Change
Different scholars such as Ver Hoef [20], Gardner [23], of deviance was used to measure the extent to which
Power [25] and Potts [26] gave different decisions and the fit of the model was improved when extra variables
comments at different times about the models appro- were added to the model. The main effects and com-
priate to over-dispersed data. Therefore, we compared bination of two ways interaction were fitted, provided
the two models using the following two approaches; that attention was given to hierarchical principle of
comparing the values of log-likelihood, AIC and BIC model fitting. The mean–variance relations for nega-
to assess goodness-of-fit based on our data for the two tive binomial and Quasi-Poisson were solved simulta-
models as shown in Table 2 [27]; and using mean–vari- neously to get the value (cut-off points) where the two
ance and mean-weight relation and finding the cut-off- curves meet each other. The mean of response variable
point (boundary value) where the two curves cross each and cut-off points were compared to each other for the
other as shown in Eqs. (3), (5), (6) and (refer Fig. 1). To two models to select the one which had smaller varia-
do this, one can equate the two mean–variance relation tion for response variable. The model selected for anal-
equations of the two models (3) and (5) after predicting ysis was the one with smallest information criteria and
over-dispersed parameters for the two models separately. smallest dispersion parameter and its goodness-of-fit
Then, one can find the mean value that makes the two was assessed using Hosmer–Lemeshow goodness-of-
graphs cross each other. We consider this value as cut-off fit statistic [28]. Influential observations were identified
point or boundary value. If the mean of response vari- using cook’s distance against observations [29]. Finally,
able (CD4 cell count for our case) is less than the cut-off the linear predictor and its square on the response vari-
point, we have to consider negative binomial; while if the able were important for checking appropriateness of
mean of the variable of interest is greater than the cut-off link function for the selected model [28]. Data analy-
point, we need to consider a Quasi-Poisson model [20] sis was conducted using SPSS version 21 and R version
(refer to Fig. 1). 3.2.3.
16
14
Weight= diag (
Weight of CD4 Cell count
12
10
8
Weight of NB
6
Weight= diag ( Weight of QP
4
0
0 1 2 3 4 5 6 7 8 9 10
Mean of CD4 cell count
Fig. 1 Mean-weight relationship for Quasi-Poisson and negative binomial models
Seyoum et al. AIDS Res Ther (2016) 13:36 Page 5 of 10
Fig. 2 Monthly distribution of changes in CD4 cell count after 1 month of treatment
1.6
Log(CD4 cell count Change)
phone had significantly affected CD4 cell count change for Interaction effects of owner of cell phone and age
1 month of therapy. Hence, the expected change of CD4 of patients
cell count for a patient without cell phone decreased by Naturally, as age of a patient increases, CD4 cell count
43% (aRR = 0.67, P value = 0.0226) as compared to oth- decreases, but the decreasing rate of those patients with
erwise identical patients with a cell phone. With regard to cell phone was less likely than that of patients without cell
WHO stages, stages 2 and stage 3 patients’ CD4 changes phone (aRR = 0.987, P value = 0.007) (refer to Table 3).
were lower than that of stage 1 patients. Table 3 also shows Figure 3 indicates that the decreasing rate of patients
significant interaction effects with main effects and the fol- with owner of cell phone is less likely as comapred to
lowing were significant interaction effects in Table 3. those patients without cell phone.
Seyoum et al. AIDS Res Ther (2016) 13:36 Page 8 of 10
1.2
0.8
Incident rate
0.2
0
poor Fair Good
Adherence category of paents
Fig. 4 Interaction plot between adherence and marital status of patients
5
Log(CD4 cell count change)
without partner
2
with partner
1
log(CD4 cell count change)= 1.406+0.003 Inicial CD4
0
95 100 105 110 115 120
Ini al CD4 cell count
Fig. 5 Interaction effect between initial CD4 and marital status of patients
Seyoum et al. AIDS Res Ther (2016) 13:36 Page 9 of 10
only when nobody is around; and this leads to reduction those who had low CD4 cell count change, for pre-treat-
of CD4 cell count. Naturally, aged people are less likely to ment counseling and awareness creation. The study also
have high CD4 cell count as compared to young people. tried to identify a certain group of patients who were
But the decreasing rate of CD4 cell count as age increases with maximum risk of CD4 cell count change and need
was different for patients having cell phone and without high intervention for counseling and awareness crea-
having cell phone. Hence patients with cell phone had less tion. Hence, we recommend that the Ministry of Health
decreasing rate as compared to those patients without cell (MOH) give due attention for awareness creation so that
phone. patients should expose the disease to family members
The significant result of initial CD4 cell count on cur- and adhere to HAART directed by health care service
rent CD4 cell count obtained under this study is con- providers on time using the alarm of their cell phone as
sistent with a previous study [27]. Hence, a patient who remembrance.
started HAART with high initial CD4 cell count had high
CD4 cell count change. On the other hand, an insignifi-
Abbreviations
cant result of gender on CD4 cell count change in this AIC: Akaike information criteria; aRR: adjusted rate ratio; BIC: Bayesian informa-
study contradicted with previous research [27] and is tion criteria; CI: confidence interval; CD4: classification determinant four;
supported by another research [14]. A significant result HAART: highly active anti-retroviral therapy; HIV: human immune deficiency
virus; SPSS: Statistical Package for Social Science; WHO: World Health Organiza-
for marital status obtained in this study is supported tion; MLE: maximum likelihood estimator.
by another previous study [11]. The significant result of
WHO stages on CD4 cell count in this study is also sup- Authors’ contributions
The principal author wrote the proposal, developed data collection format,
ported by previous longitudinal study [11]. supervised the data collection process and analysed the data in consulta-
tion with the second and the third authors. The second and the third authors
Limitations edited the document, gave critical comments for the betterment of the
manuscript applying their rich experiences. All authors read and approved the
One limitation of this study was that the interactions final manuscript.
between variables were identified in model fit techniques
which were not pre-specified or expected during data Author details
1
Department of Statistics, Bahir Dar University, Bahir Dar, Ethiopia. 2 Depart-
collection. Therefore, detail information on why these ment of Statistics, University of South Africa, Pretoria, South Africa. 3 School
interactions affect on first month CD4 cell count change of Mathematics, Statistics and Computer Science, University of KwaZulu Natal,
was not collected and therefore, the reason for some of Durban, South Africa.
these findings cannot be explained. Furthermore, this Acknowledgements
study focused on first month CD4 cell count change. Amhara Region Health Research & Laboratory Center at Felege-Hiwot Referral
There was no evidence whether or not the factors that Hospital, Ethiopia, is gratefully acknowledged for the data supplied for our
health research.
affected the CD4 cell count change in first month therapy
can also affect the change of CD4 cell count of longitudi- Competing interests
nal data for the same cohort. The study also tried to iden- The authors declare that they have no competing interests.
tify special characteristics of HIV positive adults and we Availability of data and materials
should not generalize the result to the whole HIV positive We confirm that the research is based on secondary data obtained at
people, since the investigation did not include HIV posi- Felegehiwot-Hiwot Referal Hospital. We can avail the data up on request.
tive patients whose age were less than 15 years. Hence, Consent for publication
the result may not be the same on this issue if we incor- This manuscript has not been published elsewhere and is not under consid-
porate all HIV positive people whose ages are less than eration by another journal. All authors have approved the final manuscript and
agreed with its submission to AIDS Research and Therapy. We also agreed the
15 years; and this needs further investigation. Therefore, authorship and order of authors for this manuscript.
for researchers who want to study this gap it can be con-
sidered as potential for further study. Ethical consideration
Ethical clearance certificate had been obtained from two universities namely
Bahir Dar University, Ethiopia with Ref ≠ RCS/1412/2006 and University of
Conclusions South Africa (UNISA), South Africa, Ref ≠ :2015 – SSR – ERC_006. We can attach
Quasi-Poisson regression model was a better fit for the the ethical clearances certificate up on request. Hence all of the authors have
appropriate permission for the data we used.
given data, and variables that significantly predict the
response variable were identified using this model. The Funding
result under this investigation indicated that CD4 cell There is no agent that funds the manuscript to be published or “not
applicable”.
count change of HIV positive people had been affected
by several factors. There should be a special attention Received: 9 September 2016 Accepted: 31 October 2016
and intervention for HIV positive adults, especially for
Seyoum et al. AIDS Res Ther (2016) 13:36 Page 10 of 10
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