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Pnas00069 0190
Pnas00069 0190
Pnas00069 0190
USA
Vol. 70, No. 6, pp. 1809-1813, June 1973
DAVID HOUSMAN*, BERNARD G. FORGETt, ARTHUR SKOULTCHIT, AND EDWARD J. BENZ, JR.t
*Department of Biology, Massachusetts Institute of Technology, Cambridge, Mass. 02139; and the t Division of Hematology of the
Department of Medicine, Children's Hospital Medical Center, and the Department of Pediatrics, Harvard Medical School,
Boston, Massachusetts 02115
Communicated by William B. Castle, March 29, 1973
ABSTRACT A hybridization assay procedure was de- there exists in these conditions a normal amount of a struc-
vised that makes possible quantitation of the ratio of turally and functionally abnormal mRNA. Recent studies in
mRNA of alpha to mRNA of beta globin chains in an RNA
sample. The assay uses the radioactive synthetic DNA ,3 thalassemia of the Ferrara type, in which there is a total
copies obtained by incubation of RNA-dependent DNA absence of fl-chain synthesis (beta0 thalassemia), suggest that
polymerase of avian myeloblastosis virus with rabbit globin strict deficiency of mRNA may not be the only factor in-
mRNA that is 80-90%4 enriched in mRNA specific for synthe- volved in that type of fl thalassemia because, in a cell-free sys-
sis of alpha or beta globin chains. The rabbit alpha-chain
mRNA is obtained from the postribosomal supernatant tem, the addition of ribosome-free supernatant fraction, from
of rabbit reticulocyte lysates; the rabbit beta-chain mRNA reticulocytes of nonthalassemic patients containing Hb A or
is obtained from the largest polysomes of rabbit reticulo- Hb S, to ribosomes of these patients with beta0 thalassemia,
cytes treated with L-O-methylthreonine. Sufficient homol- leads to the synthesis of some betaA, but not betas, globin
ogy exists between rabbit and human globin chains and chain(21, 22).
globin mRNAs that the synthetic DNA copies of chain-
specific rabbit globin mRNA hybridize with human globin Our approach to the problem has been to devise specific
mRNA. Applied to the study of globin mRNA isolated assays for a- and f-chain mRNA that do not depend on the
from reticulocytes of humans with alpha and beta thal- ability of the RNA to function as messenger. It is possible to
assemia, the technique revealed marked quantitative synthesize a radioactive DNA copy of globin mRNA (cDNA)
deficiency of alpha-chain mRNA relative to beta-chain
mRNA in alpha thalassemia and similar deficiency of by using the RNA dependent-DNA polymerase of avian
beta-chain mRNA relative to alpha-chain mRNA in beta myeloblastosis virus (23-25). This DNA can be used in DNA-
thalassemia. The thalassemia' syndromes are therefore RNA hybridization assays to identify and quantitate globin
characterized by true quantitative deficiency of the mRNA mRNA in an RNA sample. Furthermore, it is possible to
specific for the affected globin chain. isolate rabbit globin mRNA that is 80-90% pure for a (26) or
The thalassemia syndromes are inherited disorders of hemo- fi (27) globin mRNA activity when translated in a cell-free
globin (Hb) synthesis characterized by absent or decreased system. DNA synthesized from such chain-specific mRNA
synthesis of alpha (a) or beta (f) globin chains of human adult can be used to quantitate the ratio of a to fi mRNA in a given
hemoglobin (1-5). When there is some synthesis of the affected preparation of rabbit globin mRNA (D. Housman, A.
globin chain, analysis of its peptides reveals no evidence of an Skoultchi, & G. Temple, manuscript submitted). We have ex-
aminoacid substitution (6-8), nor is there evidence of synthesis tended these methods to the study of human globin mRNA.
of incomplete globin chains where there is total absence of the Because there is sufficient cross-hybridization between human
globin chain (9). There is a great deal of evidence, however, globin mRNA and rabbit globin cDNA (24, 25), we have been
that the genes for a and f thalassemia are closely linked to the able to use the chain-specific rabbit globin cDNAs to quanti-
genes for the structural loci of the a and f globin chains, tate the ratio of a to fi globin mRNA in the reticulocyte RNA
respectively (1). of humans with different thalassemia syndromes.
Studies on various aspects of Iolypeptide chain initiation Our results indicate that in the a thalassemia syndrome of
and translation in homozygous f thalassemia have revealed no Hb H disease the a/fl mRNA ratio is 1: 6, whereas in homo-
abnormalities (10-15). However, when globin mRNA isolated zygous fl thalassemia the a/f mRNA ratio is 10: 1.
from fi thalassemia reticulocytes is added to a heterologous MATERIALS AND METHODS
cell-free system, much less human fi chain is synthesized than
a chain (16-18). The opposite is observed in the a thalassemia Materials. RNA-dependent DNA polymerase of avian
syndrome of Hb H disease (19, 20). This demonstration of a myeloblastosis virus, a gift of I. Verma, D. Smoler, and D.
deficienev of functional chaiin-specific mRNA in both a and f Baltimore, was purified as described (28, 29). Oligo(dT)12-16
thalassemia, however, does not rule out the possibility that was obtained from Collaborative Research Inc., Waltham,
Mlass. [3H]dGTP (specific activity 8 Ci/mmol) and [3H]
Abbreviations: cDNA, synthetic DNA copy of mRNA; Hb, leucine (38.8 Ci/mmol) were obtained from New England
hemoglobin. Nuclear Corp. Aspergillus oryzae SI nuclease was purified from
I Present address: Department of Biology, Yale University, New amylase type IV-A (Sigma Chemical Co.) as described (30, 31).
Haven, Conn. Escherichia coli tRNA was obtained from Schwarz/M\lann and
Please address reprint requests to: Dr. B. Forget, Children's was extracted with phenol before use. Peripheral blood con-
Hospital Medical Center, Boston, Maass. 02115. taiiming 5-20% reticulocytes was obtained from patients with
1809
1810 Medical Sciences: Housman et al. Proc. Nat. Acad. Sci. USA 70 (1973)
tained by incubation of the mRNAs with partially purified
RNA-dependent DNA polymerase of avain myeloblastosis
virus, oligo(dT)12_16, [3H]dGTP, and actinomycin D (23).
The DNA product was incubated at 370 for 18 hr in 0.3 N
KOH, then neutralized with HCL. E. coli tRNA (50 ,g) was
added as carrier. The DNA was isolated by Sephadex G-150
gel filtration in 0.1 M ammonium bicarbonate buffer, lyophil-
ized, and resuspended in H20. The cDNA obtained from par-
tially purified (nonthalassemic) human globin mRNA and that
obtained from the single 1OS RNA band isolated by acrylamide
gel electrophoresis of the same human mRNA, were used as
templates for synthesis of 32P-labeled RNA by E. coli RNA
polymerase. Identical fingerprint patterns were obtained from
1 2.5 5 to the [32P]RNA copies of both types of cDNA, and the nucleo-
tide sequences of most of the oligonucleotides match known
ng RNA ADDED aminoacid sequences in either a or 3 globin chains (32). Fur-
FIG. 1. (A) Hybridization of rabbit a and (3 mRNAs with thermore, the RNA transcript from the a thalassemia cDNA
[3H] DNA copy of rabbit a mRNA. Hybridization was done used in the experiments to be presented below yields a similar
for 40 hr at 650. The indicated amount of RNA added represents fingerprint pattern, but with definite quantitative differences
total A260 units of the rabbit mRNA sample present (1 ,g = between the oligonucleotides: one very prominent set and one
0.025 A260 units). The cDNA input was 137 cpm per reaction very faint set of oligonucleotides. The sequences present in the
mixture over a background of 20 cpm; the digested blank reaction prominent oligonucleotides match (3-chain, but not a-chain,
mixture without mRNA contained 8 cpm above background. aminoacid sequences (32).
Arrows indicate the points where half-saturation of hybridization
is achieved. (B) Hybridization of rabbit a and , mRNAs with Hybridization Assays contained in 5 ul, 0.2 M sodium phos-
[3H]DNA copy of rabbit ,B mRNA. The conditions are the same phate buffer (pH 6.8), 0.5% sodium dodecyl sulfate, 100-300
as in (A). The cDNA input was 350 cpm per reaction mixture cpm of [3H ]DNA copy, and 0-10 ng of mRNA. The mixture
over a background of 20 cpm; the digested blank reaction mix- was incubated for 40 hr at the indicated temperatures, in
ture without mRNA contained 15 cpm above background.
mRNA isolated from these reticulocytes showed a much more The a/fl mRNA ratio obtained, by the same calculation, for
profound deficiency of a mRNA activity, when translated in the f-thalassemia mRNA in this experiment is 4.8/1 (1.2 ng
the cell-free system of Krebs II mouse ascites tumor (19): against human cDNA/0.25 ng against rabbit a cDNA).
the a/f globin chain synthetic ratio in the cell-free system was However, the plateau value for fi-thalassemia mRNA hy-
1/25 (data not shown). The a/fl mRNA ratio obtained by bridized to human cDNA (% hybrid) was lower (50%) than
hybridization gives an intermediate value between these two that for the normal human mRNA (80%). This observation
extremes. In a second unrelated patient with Hb H disease, suggested the possibility that some of the hybrids formed at
similar hybridization anid intact-cell and cell-free globin syn- 650 were duplexes between -y mRNA and cDNA.
thesis results were obtained. Discrepancy between intact-cell Analysis of the melting profile of the hybrids formed at 650
and cell-free mRNA-directed protein synthesis in a thalassemia confirmed that a significant fraction (30%) of the fi-thal-
has also been reported by others (20). All of these findings may assemia mRNA-human cDNA hybrids had a lower melting
indicate the presence, in the a-thalassemia reticulocyte, of temperature (800) than the hybrids between normal human
interchain protein synthesis regulation, and translational de- mRNA and human cDNA (930) (data not shown). To elim-
pression of f-chain synthesis or release, due to the absence of inate this low-melting component, which we believe to be due
a chains. A role of a chains in the regulation of f-chain syn- to hybrids between y-chain mRNA and fl-chain cDNA,
we increased the temperature of hybridization to 780. The re-
thesis has been suggested (33-37).
sults of the 780 hybridization are shown in Fig. 3B: no change
Hybridization of f-Thalassemia mRNA with Chain-Specific occurred in the saturation curve of normal (human) mRNA
Rabbit cDNA. The fi-thalassemia mRNA shows the same compared to the results obtained at 650. However, the amount
pattern of hybridization with rabbit a cDNA as the normal of fi-thalassemia mRNA required to reach half-saturation of
human mRNA (Fig. 2A): half-saturation of hybridization is hybridization was much greater than at 650 (5 ng instead of
achieved with 0.25 ng of RNA. Hybridization of the ,B-thal- 1.2 ng). The ratio of a-chain mRNA to f-chain mRNA in the
assemia mRNA with rabbit fi cDNA revealed half-saturation B-thalassemia RNA is therefore about 10:1 (5 ng against
of hydridization achieved with 0.5 ng of RNA (Fig. 2B). human cDNA/0.5 ng against rabbit a cDNA). Again, as the
These results indicate the presence of only twice as much a as ratio of a to mRNA in total cellular RNA rather than poly-
non-a mRNA in the fi-thalassemia mRNA. In the cell-free sys- somal RNA has been determined, it seems very unlikely that
tem this same mRNA promotes the synthesis of only 1/10 as a significant amount of fl-chain mRNA sequences that cannot
much ,B chain as a chain, but it also promotes the synthesis of be translated is present in these cells.
significant amounts of the y chain of fetal hemoglobin
which is usually increased in fi thalassemia. There is about half DISCUSSION
as much -y- as a-chain synthesis in the cell-free system, A large amount of experimental evidence has accumulated that
whereas there is 1/3 as much y- as a-chain synthesis in indirectly suggests that there must exist a quantitative defi-
the patient's intact reticulocytes (data not shown). Because ciency in mRNA for one or another globin chain in the various
there is a good deal of homology between the human y thalassemia syndromes. Even the demonstration that mRNA
and ,B globin chains (39 amino acids different out of 146), the isolated from thalassemic reticulocytes reproduces, in heterol-
human -y mRNA present in the sample could be hy- ogous cell-free systems, the imbalance of globin-chain syn-
bridizing with the rabbit ,B cDNA and giving a falsely high thesis characteristic of intact thalassemic reticulocytes, does
value for fi mRNA content in the sample. For this reason a not rule out the possibility of a structurally and functionally
more specific test for quantitation of human fi mRNA was abnormal mRNA for the affected chain, present in normal
devised. amounts within the thalassemic reticulocytes. The results of
Hybridization of Human mRNA with Human f cDNA. Two the hybridization experiments described in this report provide
major variables were altered to permit quantitation of ,B direct evidence for the suspected quantitative deficiency of
mRNA (relative to a mRNA) in the presence of an excess of chain-specific globin mRNA in both a- and fi-thalassemia
human -y-chain mRNA. First, human fl-chain [3H ]cDNA syndromes. This direct demonstration is provided not by a
was synthesized and replaced rabbit fl-chain cDNA in the functional test of the mRNA but by a quantitative chemical
Proc. Nat. Acad. Sci. USA 70 (1973) mRNA Deficiency in Thalassemia 1813
assay: a DNA-RNA hybridization assay capable of detecting 4. Weatherall, D. J., Clegg, J. B. & Naughton, M. A. (1965)
the presence of nanogram amounts of a specific mRNA mole- Nature 208, 1061-1065.
5. Bank, A. & Marks, P. A. (1966) Nature 212, 1198-1200.
cule. Previous attempts-to demonstrate deficiency of mRNA 6. Guidotti, G. (1962) "Thalassemia," in Conference on Hemo-
in thalassemia by similar hybridization techniques (18) have globin (Arden House, Columbia University, New York).
not given clear-cut results because of the use, as hybridization 7. Baglioni, C. (1963) " Correlations between genetics and
probes, of DNA copies of total globin mRNA containing copies chemistry of human hemoglobins," in "Molecular Genetics",
of both a and mRNA in presumably equal amounts. In the ed. Taylor, J. H. (Academic Press, New York and London),
Part 1, p. 405.
current study, we have used the DNA copies of chain-specific 8. Jones, R. T. & Schroeder, W. A. (1963) Biochemistry 2,
mRNA for rabbit a and globin chain. By comparing the 1357-1367.
point at which a standard set of dilutions of a mRNA prepara- 9. Dreyfus, J. C., Labie, D., Vibert, M. & Conconi, F. (1972)
tion achieves half-maximum hybridization with and then Eur. J. Biochem. 27, 291-296.
10. Bank, A. & Marks, P. A. (1966) J. Clin. Invest. 45, 330-336.
with a globin cDNA, one obtains a quantitative ratio of a to 11. Clegg, J. B., Weatherall, D. J., Na-Nakorn, S. & Wasi, P.
mRNA content of the given RNA sample. Nonthalassemic (1968) Nature 220, 664-668.
samples give a ratio of 1 to 1; on the contrary, in a thalassemia 12. Gilbert, J. M., Thornton, A. G., Nienhuis, A. W. & Anderson,
the a to ,B mRNA ratio is roughly 1 to 6, and in B thalassemia W. F. (1970) Proc. Nat. Acad. Sci. USA 67, 1854-1861.
this ratio is roughly 10 to 1. These findings provide strong 13. Nienhuis, A. W., Laycock, D. G. & Anderson, W. F. (1971)
Nature New Biol. 231, 205-208.
evidence against the hypothesis that there exists, in the usual 14. Nathan, D. G., Lodish, H., Kan, Y. W. & Housman, D.
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but present in normal amounts. Such a mRNA would still be 15. Rieder, R. F. (1972) J. Clin. Invest. 51, 364-372.
expected to have sufficient sequence homology with the nor- 16. Nienhuis, A. W. & Anderson, W. F. (1971) J. Clin. Invest.
50, 2458-2460.
mal mRNA to be detected in the hybridization assay. 17. Benz, E. J., Jr. & Forget, B. G. (1971) J. Clin. Invest. 50,
Demonstration of a quantitative deficiency in a or mRNA 2755-2760.
in thalassemia leaves open the question of the molecular basis 18. Dow, L. W., Kacian, D., Terada, M., Metafora, S., Spiegel-
for this defect. One possibility is that the deficient mRNA man, S., Marks, P. A. & Bank, A. (1972) J. Clin. Invest. 51,
sequence is not transcribed as efficiently or processed and
24a, abstr.
19. Benz, E. J., Jr., Swerdlow, P. S. & Forget, B. G. (1972) Blood
transported from nucleus to cytoplasm as effectively as are 40, 930, abstr.
normal mRNA sequences. Alternatively, a quantitative de- 20. Grossbard, E., Terada, M., Dow, L. W. & Bank, A. (1973)
ficiency could result from a less-stable mRNA due to an altera- Nature New Biol. 241, 209-211.
tion in its primary or secondary structure. Although in homo- 21. Conconi, F., Rowley, P. T., Del Senno, L., Pontremoli, S. &
Volpato, S. (1972) Nature New Biol. 238, 83-87.
zygous and heterozygous thalassemia there is more /3-chain 22. Rowley, P. T. & Kosciolek, B. (1972) Nature New Biol. 239,
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cells than in the peripheral blood reticulocytes (38, 39), it is 23. Verma, I. M., Temple, G. F., Fan, H. & Baltimore, D. (1972)
not known whether this discrepancy is due to differences in Nature New Biol. 235, 163-167.
the /3/a mRNA content present in marrow cells and reticulo- 24. Ross, J., Aviv, H., Scolnick, E. & Leder, P. (1972) Proc.
Nat. Acad. Sci. USA 69, 264-268.
cytes. Comparison of the /3/a mRNA content in thalassemic 25. Kacian, D. L., Spiegelman, S., Bank, A., Terada, M., Meta-
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Finally, application of the hybridization technique to the 26. Jacobs-Lorena, M. & Baglioni, C. (1972) Proc. Nat. Acad.
Sci. USA 69, 1425-1428.
study of Ferrara-type thalassemia should help resolve the 27. Temple, G. & Housman, D. E. (1972) Proc. Nat. Acad. Sci.
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Baltimore, D. (1971) Nature New Biol. 233, 131-134.
We thank Drs. D. Baltimore, D. G. Nathan, J. Huberman, and 29. Baltimore, D. & Smoler, D. F. (1972) J. Biol. Chem. 247,
P. Gross for generous support and encouragement; Dr. G. Tem- 7282-7287.
ple, H. Meade, and Dr. C. Baglioni for use of their chain-specific 30. Ando, T. (1966) Biochim. Biophys. Acta 114, 158-168.
rabbit globin mRNAs; Dr. I. Verma, D. Smoler, and Dr. D. 31. Sutton, W. D. (1971) Biochim. Biophys. Acta 240, 522-531.
Baltimore for the purified avian myeloblastosis virus RNA- 32. Marotta, C., Verma, I. M., McCaffrey, R. P. & Forget, B. G.
dependent DNA polymerase. This work was supported in part (1973) Fed. Proc. 32, 455, abstr.
by the following grants from the National Institutes of Health: 33. Baglioni, C. & Campana, T. (1967) Eur. J. Biochem. 2,
CA-13472, AM-15929, and AM-05581. D.H. and A.S. are fellows 480-492.
of the Jane Coffin Childs Memorial Fund for Medical Research. 34. Shaeffer, J. R. (1967) Biochem. Biophys. Res. Commun. 28,
B.G.F. is the recipient of a Public Health Service Research Career 647-652.
Development Award, AM-70234. 35. Shaeffer, J. R., Trostle, P. K. & Evans, R. F. (1969) J. Biol.
Chem. 244, 4284-4291.
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