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Gordeeva2017 Article MathematicalModelingOfBiotechn
Gordeeva2017 Article MathematicalModelingOfBiotechn
Gordeeva2017 Article MathematicalModelingOfBiotechn
, 2017.
Original Russian Text © Yu.L. Gordeeva, E.G. Rudakovskaya, E.L. Gordeeva, A.G. Borodkin, 2017, published in Teoreticheskie Osnovy Khimicheskoi Tekhnologii, 2017, Vol. 51,
No. 3, pp. 270–287.
Abstract⎯The results of analyzing mathematical models of the process of batch fermentation for the produc-
tion of lactic acid have been presented. Three groups of mathematical models have been considered. The first
two groups are based exclusively on the notion of the specific growth rate, dependent or independent on sub-
strate concentration. The third group uses the notions of the specific rate of substrate consumption and specific
rate of product formation in additions to the notion of specific growth rate. The numeric estimates of constants
are presented for the majority of models as well as comparison with the experimental studies. Mathematical
models of the processes where the formation of side products is possible have been discussed, which may or
may not be of value on their own. The possible practical applicability of the models has been evaluated based
on the results of the analysis.
282
MATHEMATICAL MODELING OF BIOTECHNOLOGICAL PROCESS 283
ria, g/L; and μmax is the maximum specific growth and the equation for the rate of substrate consumption
rate, h–1.
(3). The designations in Eq. (7) are as follows: P0' is the
The appeal of Eq. (4) is that it can be integrated inde- constant, h–1, and Pmax is the maximum concentration
pendently of the ratio of substrate S and product P.
of the product, g/L.
The solutions for Eq. (4) are described in [15, 18, Equation (7) has an analytical solution as presented
20, 21] and take the form in [15] and below:
X =
X 0 X max exp (μ maxt )
X max − X 0 + X 0 exp (μ maxt )
, (5)
P =
( ) .
P0Pmax exp P0't
− P + P exp ( P 't )
(8)
X max ⎛X ⎞ Pmax 0 0 0
X = ; c = ln ⎜ max − 1⎟ . (6)
1 + exp ( c − μ maxt ) ⎝ X0 ⎠ The estimation of the constants in Eqs. (3) and (8)
In Eqs. (5) and (6), X0 is the initial concentration of was conducted using the experimental data for cultiva-
biomass, g/L. tion on glucose. The estimates of kinetic constants at
pH 5.4, 6.0, 6.5, and 7.1 with an initial glucose con-
The equations for the rate of substrate consump- centration 20 g/L have been presented. A comparison
tion and product formation are different in different of the experimental results with the data of modeling
publications and their form depends on the used for all the presented examples demonstrated suffi-
strains of microorganisms and types of substrates used ciently good reproducibility. The data for pH 6.0 are
for cultivation. Glucose is a widely used substrate. The presented in Fig. 1 as an example.
list of kinetic models for cultivation with glucose is The fermentation of corn pulp at pH 6.2 by the
presented in [15] (the table is published in [2]). same type of organism was investigated in the same
A model of the process using cultivation of L. amy- study. The cultivation medium contained 45 g/L of
lophilus microorganisms in glucose [15] involves corn pulp. The following results were noted. The
Eq. (4) combined with the equation for the rate of the kinetics of lactic acid production using both substrates
product formation as follow: was similar. The ms value for all experimental results
was insignificant, i.e., 0.05, 0.001, 0.008, and 0.1,
dP = P ' ⎛1 − P ⎞ P (7) which allowed the simplified form of Eq. (3) to be
0 ⎜ ⎟
dt ⎝ Pmax ⎠ used, i.e., ms = 0.
Table 2. Numeric values of constants Despite that C and Cmax are identical to X and Xmax
(biomass concentration and maximum biomass con-
Corrected centration), they are presented in [22] in units of opti-
pH P0' Pmax P0 YS/P YX/S
YS/P YX/S cal density at 620 nm, i.e., OD620.
5.4 0.15 19.8 1.1 0.62 4.16 0.84 2.88 The constant μ0 (in the publication denoted as μ) is
essentially different from μmax in Eq. (4). The authors
6.0 0.29 21.4 0.5 0.62 4.19 0.62 4.16
define the value of μ0 (μ) as the initial specific growth
6.5 0.28 18.5 0.8 0.72 3.45 0.77 3.15
rate, h–1. The variables S and P are concentrations of
7.1 0.21 19.3 0.5 0.48 1.4 0.89 2.0 the substrate and product, g/L.
X max ⎛X ⎞
1 X = c −μ maxt
; c = ln ⎜ max − 1⎟ (6)
1+ e ⎝ 0
X ⎠
α B X max
B = − αB X 0
⎛ X max ⎞ −μ maxt
1+⎜ − 1⎟ e
2 ⎝ X0 ⎠ (12)
β X
+ B max ln ⎢
⎡ X0 e μ maxt
(
− 1 + X max ⎤
⎥
)
μ max ⎢ X max ⎥
⎣ ⎦
X0 X max
S = S0 + − 1
YX S YX S ⎛X ⎞
1 + ⎜ max − 1⎟ e −μ maxt
3 ⎝ 0X ⎠ (13)
m X ⎡X 0
− S max ln ⎢
( )
e μ maxt − 1 + X max ⎤
⎥
μ max ⎢ X max ⎥
⎣ ⎦
X0 1 X max
P =− +
Y X SY S Y X SY S ⎛ X ⎞
P P
1 + ⎜ max − 1⎟ e −μ maxt
4 ⎝ X0 ⎠ (14)
m X
+ S max ln ⎢
⎡X 0 ( e μ maxt
)
− 1 + X max ⎤
⎥
Y S P μ max ⎢ X max ⎥
⎣ ⎦
To model the process, Eq. (17) is supplemented by quantity of the product obtained due to growing and
the equation for the rate of product formation accord- nongrowing associates
ing to the Luedeking–Piret expression as follows [23]:
⎡ ⎤
dP = α dC + β C . ⎢ eμ t
0
⎥
(18) Pm = α PC 0 ⎢ ⎥; (20)
( )
P P
dt dt
⎢1 − C 0 1 − e μ t
0
⎥
Here, αP, g of product /L OD620; βP, g of product /L ⎣⎢ C max ⎦⎥
OD620 h.
C max ⎡ C ⎤
(
β P ⎢1 − 0 1 − e μ t ⎥ , )
0
The consumption of substrate was presented by Pn = ln (21)
authors in the same manner as follows: μ 0
⎣ C max ⎦
dS = −α dC − β C . where Pm is the amount of lactic acid synthesized by
S S (19) the growing associates, g/L, and Pn is the amount of
dt dt lactic acid synthesized by nongrowing associates, g/L.
Here, αS, g of substrate(L OD620; βS, g of substrate/L Hence, the mathematical model allows one to not
OD620 h. only calculate the dependence of lactic acid concen-
The feature of the suggested mathematical model is tration P on fermentation time, but also the compo-
that, using the possibility to analytically solve Eq. (17), nents Pm and Pn generated by the growing and
the authors obtained separate solutions to estimate the nongrowing associates, which are difficult to evaluate
36 25 2.0 8
30
1.5 6
BT, BU/mL
24 20
L, g/L
X, g/L
G, g/L
18 1.0 4
12 15
0.5 2
6
0 0 0
0 5 10 15 20 25
t, h
Fig. 2. Dependences of process indicators on time for L. lactis: j indicates X; d indicates B; h indicates P(L); s indicates S(G).
250 25 2.0 9
200 20
1.5
BT, BU/mL
6
150 15
L, g/L
X, g/L
G, g/L
1.0
100 10
3
50 0.5
5
0 0 0
0 5 10 10 15 20 25
t, h
Fig. 3. Dependences of process indicators on time for Pedicoccus acidilactici: j indicates X; d indicates B; h indicates P(L);
s indicates S(G).
experimentally. Experimental studies were conducted conclusion is quite important for understanding the
with three types of substrate, i.e., glucose synthetic biological nature of synthesis. However, a noticeable
(GS), lactose synthetic (LS), and whey-yeast extract deviation of the calculations from the experimental
permeate (WYEP). An example of the modeling results is observed in the last version with prolonged
results is presented in Fig. 4. Calculations were carried fermentation (more than 18 h).
out using the data presented in Table 5 for T = 42°C
and pH 5.9. In order to take into account the effects of biomass
growth rate inhibition, the following modified logistic
Let us highlight the following important results of equation was used [16]:
modeling. The formation of lactic acid in GS and LS
media takes place predominantly due to the growing f h
associates. At the same time, in the case of WYEP, the dX = μ ⎛1 − X ⎞ ⎛1 − P ⎞ . (22)
max ⎜
contribution of growing associates in the process dt ⎝ X max ⎟⎠ ⎜⎝ Pmax ⎟⎠
remain constant for fermentation times longer than
approximately 12 h, and the increase in the concentra- Here, f defines the degree of inhibition by biomass and
tion of P occurs due to nongrowing associates. This h is the degree of inhibition by product.
50 50
GS WYEP
P P
40 Pm 40 Pm
Lactic acid, g/L
20 20
10 10
0 5 10 15 20 25 0 5 10 15 20 25
Fermentation time, h Fermentation time, h
50
P LS
Pm
40 Pn
Lactic acid, g/L
30
20
10
0 5 10 15 20 25
Fermentation time, h
The following equations for the rate of formation of provided good agreement with the experiment for all
product P (2) and substrate S consumption were the trials. An example is presented for S0 = 77.1 g/L in
added to Eq. (22): Fig. 5. The largest deviation of the experimental and
calculated data was observed for prolonged fermenta-
dS = − 1 dP − m X . (23)
S tion of more than 10 h.
dt Y P S dt
The mathematical models with equations for the
By substituting (2) into (23), we obtain specific growth rate that include the substrate concen-
tration S and the product concentration P are most
dS = −α dX − β Х − m X , (24)
S S S
dt dt
β
Lactose and Lactic acid, g dm–3
where α S = − α ; β S = . 90 8
YP S YP S 80 7
Blomass, g dm–3
(
dP = α dX + β X ⎛⎜1 − P ⎞⎟
)
70
60 (32)
20 dt dt ⎜ P' ⎟
50 ⎝ max ⎠
P or S, g dm–3
X, g dm–3
The equation of the rate of product (lactic acid) The values for A1, A2, E1, and E2 are presented in
formation rp and side products rap: Table 10.
r p = α rx + β X , (37) The temperature in Eq. (44) is calculated using the
equation
rap = α a rx + β a X , (38)
T = ( 273 ° + T1 ) − 300 °, (45)
where α is dimensionless constant of product forma-
tion due to the growing associates; β is the constant of where T1 is temperature in degrees Celsius at which
product formation due to the nongrowing associates, the process is realized; hence, for 37°C, we obtain T =
h–1; αа is the dimensionless constant of formation of side 10 K.
products due to the growing associates; and βа is the The values E1 and E2 are in J/mol, R are in J/(mol K).
constant of formation of side products due to the non- The values μmax and Kp are calculated according to
glowing associates, h–1. (42) and (43).
The Pap concentration (g/L) combines all side The process of producing lactic acid from wheat
products in the expression flour in continuous mode was considered in [30].
dPap The equation of biomass formation was the same as
rap =. (39) (30), which next allowed simplification at Ks ! S and,
dt consequently, the equation was
The equation of the rate of substrate consumption n
includes components rp, rap, rx, rst, and ms, where rst is dX = μ ⎛1 − P ⎞ X . (46)
the rate of maltose degradation with its value rst calcu- max ⎜ ⎟
dt ⎝ Pmax ⎠
lated with the equation
The equation for the product was
rst = −k st S. (40)
dP = Y P MX . (47)
The equation for the rate of substrate consumption
rS is dt Y X
rS = − 1 rP − 1 rap − 1 rx − rst − ms X . (41) Table 9. Numeric values of constants in Eqs. (42), (43)
YP Y aP YS
μmax Kp
The side products are not formed in medium based
on hydrolyzed wheat flour. μm, h–1 1.1 Kpm 0.154
The numeric values of the constants were obtained
during modeling based on experimental data with an kμ1 9.42 × 10–7 kp1 1.02 × 10–5
initial glucose concentration of 44–182 g/L, tempera- kμ2 1.27 × 105 kp2 3.82 × 10 4
ture of 30–40°C, and pH 6.0, 5.0, 4.0. The data for
standard conditions (pH 6.0, 30°C) are presented in
Table 8.
The effect of pH was modeled by the equations [31] Table 10. Numeric values of indicators A1, A2, E1, E2 for
calculations of parameters in (36)–(41)
μm
μ max = (42) A1 A2 E1 E2
( )
; Parameter
1 + k μ1 [H + ] + k μ2[H + ]
α 287 8.88 × 103 76.9 376
K pm β, h–1
Kp = (43) 1.77 82.4
( )
+ +
,
1 + k p1 [H ] + k p2[H ] αa 2.88 53.9
with numeric values of the constants taken from Table 9. βa, h–1 2.97 × 10–2 543
The value of [H+] = 10–pH. kst, h–1 7.52 × 10–2 0.59 151 343
The effect of temperature on some parameters of
model equations (36)–(41): Ya 169
Yp 1.0
parameter = A1 exp ⎛⎜ − 1 ⎞⎟ − A2 exp ⎛⎜ − 2 ⎞⎟ . (44)
E E
Yx 0.79
⎝ RT ⎠ ⎝ RT ⎠
Table 11. Numeric values of constants in Eqs. (30), The mathematical models are based on the use of
(46)–(49) notions of the specific rate of substrate consumption
μmax, Pmax, Km, K s, and the specific rate of product formation in addition
Parameter Yx, Yp, n to the notion of the specific growth rate. These notions
h−1 g/L g/L g/L
are introduced in [32–34] as follows:
Value 0.28 98.6 0.053 0.82 0.035 0.5 3 μ = [μ max S ( K SM + S )] [K PM ( K PM + P )] , (50)
ν = [ν max S ( K S ν + S )] [K P ν( K P ν + P )] .
(51)
The equation for the substrate includes a compo-
nent of the substrate formation due to maltose degra- The specific rate of product formation π is as fol-
dation is as follows: lows:
π = [π max S ( K S π + S )] [K P π ( K P π + P )] . (52)
dS = − 1 μ X + K M .
M (48) Although the equations for ν and π are seemingly
dt YX independent, it has been obtained by using (50)–(52)
The equation of maltose degradation is as shown below:
1 = y ⎛1⎞ + δ , (53)
dM = −K M . ν⎜ ⎟ ν
M (49) ν ⎝μ⎠
dt
1 = y ⎛1⎞ + δ . (54)
Hence, unlike in [29], the formation of a side prod- π⎜ ⎟ π
uct was not observed in this study. The numeric values π ⎝μ⎠
of the constants obtained from the experimental data Hence, in fact, ν and π are calculated via the spe-
are presented in Table 11. cific growth rate with the coefficients as follows:
cultivated in glucose.
A comparison of the experimental results with the
calculations is presented in Fig. 11 [34]. The numeric
values of the constants obtained from the resulting
chemostatic cultivation are presented in Table 12 [33].
5 0.5
The use of notions of specific rates of growth, sub-
strate consumption, and product formation was
reported in [35, 36].
The difference of these publications from [32–34]
lies in the fact that the specific rates of product forma-
tion and substrate consumption are not expressed
0 10 20 using the specific growth rate.
Time, h
The rate of biomass formation is as follows:
Fig. 11. Comparison of experimental results with calcula-
dX = μ S K ix ⎛ P − Pix ⎞
tions at T = 37°C and pH 7.0: s indicates lactic acid; h 1− X. (57)
K sx + S K ix + S ⎜⎝ Pmx − Pix ⎟⎠
max
indicates glucose; n indicates cells. dt
The rate of substrate consumption is of the mortality constant Kd = 0.00318 h–1 is rather low
and its effect can be ignored.
d S = −q S K is ⎛ P − Pis ⎞
1− X . (58)
K ss + S K is + S ⎝ Pms − Pis ⎟⎠
⎜
s max
dt The values of the coefficients vary because they are
determined from different kinetic models. However,
The rate of product formation is the fact that the maximum specific rate qs max equals
dP = α dX + q S 3.33 according to [36] and 3.42 according to [35] have
K sp + S
p max engaged our attention. The maximum specific rates of
dt dt
(59) product formation qр max are nearly the same, i.e., 3.00
K ip ⎛ P − Pip ⎞
× ⎜1 − ⎟ X , [36] and 3.02 [35]; the maximum specific rates of
K ip + S ⎝ Pmp − Pip ⎠ growth μp, max differ by approximately 32%.
where μpmax, qsmax, and qpmax are maximum specific Numeric values of the constants in Eqs. (57)–(59),
rates of biomass growth, h–1; substrate consumption, which are absent in Table 13, are Pmx = 49.9 g/L, Pms =
g/(g h); and product formation, g/(g h). Pmр = 95.5 g/L.
Let us note that the specific rate of lactic acid for-
mation is determined by both the specific rate of bio-
mass formation and product formation simultane- PRACTICAL APPLICATION
ously. The mathematical models in [36] differ from OF MODELING RESULTS
Eqs. (57)–(59) by introducing the coefficient of the
bacteria mortality Kd, as well as the exponential Data on the practical applications of mathematical
dependence is used to account for the inhibition of the models have been used in [16, 37, 38] for calculating
product instead of the linear dependence. The equa- the productivity indicator for the target component
tions are given as follows: (lactic acid) Qp.
The specific growth rate is
S K ix −P
μ = μ max
K px
e . (60) Table 13. Values of optimal parameters obtained in [35, 36]
K sx + S K ix + S
Kinetic parameters Reference [36] Reference [35]
The rate of biomass formation is
Model of biomass production
d X = (μ − K )X . (61)
dt
d
μmax, h–1 1.6 1.1
The rate of substrate consumption is Kiх, g/L 167.46 304
d S = −q S K is −P K ps Ksх, g/L 0.89 1.32
e X. (62)
K ss + S K is + S
s max
dt Kpх, g/L 17.07 –
The rate of product formation is Kd, h–1 0.00318 –
dP = α dX + q S K ip −P K pp Model of sugar processing
e X. (63)
K sp + S K ip + S
p max
dt dt Kis, g/L 303.17 140
Equations (57)–(59) contain 16 constants, while Kss, g/L 0.1 2.05
Eqs. (60)–(63) contain 14 constants. The correlation
of Eqs. (57)–(63) with this large number of constants Kps, g/L 29.17 –
to the experimental data is quite high. qs max, h–1 3.33 3.42
The authors introduce a number of assumptions
(simplifications) during the processing of experiemt- Model of lactic acid production
nal data, such as Kip, g/L 303.17 140
Kss = Ksp, Pms = Pmp, Pis = Pip, Kis = Kip [35] Kрp, g/L 29.17 –
and Kss = Ksp, Kis = Kip, Kps = Kpp [36].
qр max, h–1 3.00 3.02
The resulting estimates of the parameters are pre-
sented in Table 13. The authors [36] note that the value α, g/g 0.26 0.39
Qp, g/(L h) the calculations are presented in Fig. 12. Two practical
3.0 conclusions follow from Fig. 12. The model equations
make it possible to predict optimal conditions
2.5 (maxQp), for which the initial concentration equals
35.5 g/L. The second conclusion lies in the fact that
2.0
the same productivity can be obtained for two differ-
1.5 ent initial levels of Sf. Based on the figure, these values
1.0 are approximately S 1f = 21.4 g/L and S 2f = 61.2 g/L.
The same results are obtained in [37] and presented in
0.5 Fig. 13.
0 The time of fermentation that provides the Qp value
9.0 21.4 35.5 48.1 61.2 77.1 is also presented in the figure. Hence, the same pro-
Sf , g/L ductivity can be obtained for two different Sf values,
but reaches the same Qp over a different time period.
Fig. 12. Dependence of productivity Qp, g/(L h) on initial Figure 13 was obtained using Eqs. (1)–(3) of the
substrate concentration Sf, g/L. mathematical model. In (3) mS = 0 and dP/dt = 0. The
values of μ in (1) and (2) are found as follows:
⎛ ⎞
Qp, g/(L h) μ = μ max ⎜1 − P ⎟ S . (65)
⎝ Pmax ⎠ K S + S + S K i
2
2.0
The numeric values of constants in (1)–(3) and
(65) are presented in Table 14 [35]. Note that the pos-
(29.85) (29.85)
(30.45)
sibilities of applying mathematical models have been
(26.11) presented in the most detail in [38]. A description of
(31.43)
(23.94) (31.99) three algorithms for the realization of mathematical
1.5 (35.0) models has been provided.
(20.0)
(37.62) Algorithm 1 includes estimates of the process indi-
(17.15)
cators (dependences of concentrations on fermenta-
tion time); estimates of the time of process completion
tk, after which there is no product synthesis; and the
1.0 dependence of productivity and process indicators at
10 20 30 40 60 t = tk (Fig. 13 was obtained according to this algo-
Sf , g/L rithm).
Algorithm 2 includes calculations of the initial sub-
Fig. 13. Dependence of productivity for the target product strate concentration Sf, at which the maxQp is reached
P per unit of the reactor volume on the initial substrate and time of reaching this maximum topt, i.e., the opti-
concentration Sf. Time of fermetation (h) is presented in
brackets. mization problem is solved.
Algorithm 3 includes obtaining estimates of Sf, for
The value of productivity is calculated as the ratio which the same productivity Qp, S 1f , and S 2f can be
of the running concentration P (g/L) to the running reached, as well as the time of reaching this Qp value.
time point t (h), i.e., At the same time, all of the process indicators for
S 1f and S 2f are estimated.
Qp = P . (64) The results of numeric calculations with taking into
t consideration the technical limitations and ensuring
Using the mathematical model equations (20)– the possibility of realization the obtained solutions
(24), the authors in [16] obtained the dependence of have been presented for all algorithms.
productivity for the initial substrate concentrations The practical results of modeling nonstationary
9.0, 21.4, 35.5, 48.1, 61.2, and 77.1 g/L. The results of fermentation were obtained in [39, 40].
δ3 × 10–3, g/L
1
10
3 δ1 × 10–3, g/L
δ2 × 10–3, g/L
5
2
10 10
5 5
2*
–5
–10 –5 –10
–10 3*
1*
Fig. 15. Phase trajectories in the transient process: (1) δ10 = 0.01; δ 02 = δ30 = 0.0; (1*) δ10 = − 0.01;δ 02 = δ30 = 0.0; (2) δ30 = 0.01;
δ10 = δ 20 = 0.0; (2*) δ30 = − 0.01; δ10 = δ 20 = 0.0; (3) δ 02 = 0.01; δ10 = δ30 = 0.0; (3*) δ 02 = − 0.01;δ10 = δ30 = 0.0.
ms survival constant, h–1; cells using fedbatch culture, Enzyme Microb. Technol.,
1998, vol. 22, no. 3, p. 199.
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