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Genetics Reviewer DNA & RNA
Genetics Reviewer DNA & RNA
➔ T
HE HYPOTHESIS: An analysis of the base ➔ Interpretation of Data: The compelling observation
composition of DNA in different species may reveal was that:
important features about the structure of DNA. ◆ Percentage of Adenine = Percentage of
Thymine
1. F
or each type of cell, extract the chromosomal ◆ Percentage of Cytosine = Percentage of
material. This can be done in a variety of ways, Guanine
including the use of high salt, detergent, or mild alkali ➔ This observation became known as Chargaff’s Rule.
treatment. Note: The chromosomes contain both DNA
and protein.
● Rosalind Franklin & Maurice Wilkins: ➢ W
atson was shown this picture by Wilkins in early
1953. From the picture, it was possible to calculate:
➔ Rosalind Franklin: 1. The distance between bases (3.4 nm)
◆ Worked in same laboratory as Maurice 2. The length of the period (0.34 nm)
Wilkins. 3. The rise of the helix (36 degrees)
◆ Study X-ray diffraction to study wet fibers of
DNA.
◆ The diffraction pattern is interpreted (using
mathematical theory). This can ultimately
provide information concerning the structure
of the molecule.
◆ She used X-ray Crystallography.
➔ O
n February 28, 1953, Francis Crick walked into the
Eagle pub in Cambridge, England, and as James
Watson later recalled, announced that “we had found
the secret of life.:” Actually, they had. That morning,
Watson and Crick had figured out the structure of
deoxyribonucleic acid, DNA. And that structure - a
● Watson & Crick’s Work: “double helix” that can “unzip” to make copies of itself
○ In 1951, James Watson traveled from the - confirmed suspicious that DNA carries life’s
United States to work with Francis Crick at hereditary information.
Cambridge University.
○ Watson and Crick used the“Model Building” ◆ In 1953, James Watson and Francis Crick
approach. described a very simple but famous Double
○ They physically built models out of wire, Helix model for the structure of DNA.
sheet metal, nuts, and bolts to come up with/
the structure of DNA. ◆ F
rancis Crick and James Watson w/ Maurice
Wilkins received the1962 Nobel Prizefor
➢ Why did they build models? discovering the molecular structure of
○ “Sometimes the fingers can grasp what the deoxyribonucleic acid (DNA).
mind cannot”(Biology the Science of Life)
◆ W
idely regarded as one of the most
○ NA consists of two chains of nucleotides in
D important discoveries of the 20th century it
a ladder-like structure which is twisted has led the way to the mapping and
(Double Helix) deciphering of all the genes in the human
chromosomes.
➢ U
sed data of M.H.F Wilkins and Rosalind Franklin,
early 50’s ➔ Watson and Crick Model:
○ Wilkins and Franklin studied the structure of ◆ The sides of the ladder are made up of
DNA crystals using X-rays. alternating molecules ofphosphate and
○ The X pattern suggested the structure of deoxyribose.
DNA was a helix. ◆ The bases make up the rings of the ladder
and are attached by a weak chemical bond
➢ Used data of Erwin Chargaff, 1940 and early 50s calledhydrogen bonds.
○ Chargaff’s Rule: His data showed that in ◆ The DNA double helix isanti-parallel, which
each species, the percent of A equals the means that the 5’ end of one strand is paired
percentage of T, and the percent of G equals with/ the 3’ end of its complementary strand
the percent of C. (and vice versa)
◆ 5’------------->3’
◆ 3’------------->5’
◆ T
wo hydrogen bonds connect T to A; three
hydrogen bonds connect G to C.
➔ W
atson & Crick quickly published their Scientific
Journal called“Nature” on April 25, 1953.
DNA
➢
D eoxyribonucleic acid
➢ DNA - a polymer of deoxyribonucleotides
➢ Usually double-stranded and has a double-helix
structure.
➢ Found in chromosomes, mitochondria, and
chloroplasts.
➢ It acts as the genetic material in most of the
organisms.
➢ Carries the genetic information. Nucleotide Structure
➢ N
ucleotides are formed by the condensation of a
DNA Structure sugar, phosphate, and one of the 4 bases.
➢ N
ucleotides are linked together bycovalent bonds
calledphosphodiester linkage.
➢ C
ovalent bonds: A chemical bond that involves ➢ T
he two strands are coiled in aright-handed fashion
sharing a pair of electrons between atoms in a (Clockwise). The pitch of the helix is 3.4 nm (a
molecule. nanometer is one billionth of a meter, that is, 10-9 m),
and there are roughly 10 base pairs (bp) in each turn.
Consequently, the distance between a bp in a helic is
approximately equal to 0.34 nm.
➢ T
he plane of one base pair stacks over the other in a
double helix. This, in addition to H-bonds, confers
stability of the helical structure.
➢ T
he two chains have anti-parallel polarity. It means if Structure of Double-helix
one chain has the polarity 5’ -> 3’, the other has 3’ ->
5’. ➢ Three major forms:
○ B-DNA
○ A-DNA
○ Z-DNA
● A-DNA:
○ Right-handed helix
○ Wider and flatter than B-DNA
○ 11 bp per turn
○ Its bases are tilted away from the main axis
of the molecule.
○ Major Groove - Narrow, Deep
○ Minor Groove - Broad, Shallow
○ Observed when less water is present. (i.e.,
Dehydration condition).
○ A-DNA has been observed in two context:
■ Active site of DNA polymerase
(~3bp)
■ Gram (+) bacteria undergoing Nucleosome Structure
sporulation.
➢ N ucleosomesare the basic unit of the chromatin
● Z-DNA: organization.
○ A left-handed helix ➢ In Eukaryotes, DNA is associated with/ proteins. (In
○ Seen in conditions ofHigh salt prokaryotes, DNA is naked)
concentration. ➢ Nulceosomes = basic bead-like unit of DNA
○ In this form, sugar-phosphate backbones packaging
zigzag back and forth, giving rise to the ○ Made of a segment of DNA wound around a
name Z-DNA (for zigzag). protein core that is composed of 2 copies of
○ 12 bp per turn. each 4 types of Histones.
○ A deep Minor Groove ➢ Nucleosomes have:
○ No discernible Major Groove ○ 8 Histones in the core
○ Part of some active genes from Z-DNA, ○ DNA wrapped twice around the core
suggesting that Z-DNA may play a role in ○ One Histone holding the Nucleosome
regulating gene transcription. together
○ A DNA ‘linker’ continues towards the next
nucleosome.
➢ The DNA has a negatively charged backbone
(because of PO43 - group)
➢ The Protein (Histones) are positively charged.
➢ The DNA and Protein are electromagnetically
attracted to each other to form chromatin.
RNA
➢
R ibonucleic Acid
➢ RNA is a polymer of ribonucleotides linked together
byphosphodiester linkage.
➢ RNA was the first genetic material.
➢ In 1967, Carl Woesefound thecatalyticproperties of
RNA and speculated that theearliest forms of life
relied on RNA both to carry genetic information and to
catalyze biochemical reactions.
➢ Their theories were not validated until the work of
Nobel Prize laureateThomas R. Cech.In the 1960s,
Cech was studying the splicing of RNA in a Covalent bonding between Nucleotides
single-celled organism,Tetrahymena thermophila,
when he discovered that anunprocessed RNA ➢ N ucleotides are linked together bycovalent
molecule could splice itself.He announced his bondscalledphosphodiester linkage.
discovery in 1982 and became the first to show that ➢ Covalent bonds: A chemical bond that
RNA hascatalytic functions. involves sharing a pair of electrons between
➢ Usually single-stranded and helical in structure atoms in a molecule.
➢ But double-stranded is also present in some viruses.
RNA Structure
Structure