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Biology REVIEW FOR CM
Biology REVIEW FOR CM
Biology REVIEW FOR CM
B. Cell Theory
The cell theory is an important unifying principle of biology.
There are three critical components of the cell theory:
1. Cells are the fundamental units of life.
2. All living organisms are composed of cells.
3. All cells come from preexisting cells.
To the original cell theory, first stated in 1838, should be added: “Evolution through natural
selection explains the diversity of modern cells.”
The cell theory has three important implications:
1. Studying cell biology is in some sense the same as studying life. The principles that
underlie the functions of the single cell of a bacterium are similar to those governing
the approximately 60 trillion cells of your body.
2. Life is continuous. All those cells in your body came from a single cell, a fertilized egg
(zygote). That zygote came from the fusion of two cells, a sperm and an egg, from your
parents. The cells of your parents’ bodies were all derived from their parents, and so on
back through generations and evolution to the first living cell.
3. The origin of life on Earth was marked by the origin of the first cells.
C. Prokaryotic Cells - Features
All prokaryotic cells have the same basic structure:
1. The plasma membrane encloses the cell, regulating the traffic of materials into and
out of the cell, and separating its interior from the external environment.
2. 2. The nucleoid is a region in the cell where the DNA is located. DNA is the
hereditary material that controls cell growth, maintenance, and reproduction.
3. 3. The rest of the material enclosed in the plasma membrane is called the
cytoplasm. The cytoplasm consists of a liquid component, the cytosol, and a variety
of insoluble filaments and particles, the most abundant of which are ribosomes
4. The cytosol consists mostly of water that contains dissolved ions, small molecules,
and soluble macromolecules such as proteins.
5. Ribosomes are complexes of RNA and proteins that are about 25 nm (nanometers)
in diameter. They can only be visualized with the electron microscope. They are the
sites of protein synthesis, where information coded for in nucleic acids directs the
sequential linking of amino acids to form proteins.
6. Cell Wall is located outside the plasma membrane. Its rigidity supports the cell and
determines its shape.
7. Capsule is enclosing the cell wall of some bacteria. Capsules protect the bacteria
from attacking by the white blood cells.
8. Internal membranes are system that contains molecules needed for
photosynthesis. The development of photosynthesis, which requires membranes,
was an important event in the early evolution of life on Earth. Other prokaryotes
have internal membrane folds that are attached to the plasma membrane. These
folds may function in cell division or in various energy-releasing reactions.
9. Flagella are prokaryotes that can swim using its appendages called flagella which
looks like tiny corkscrews. It causes the motion of the cells; if they are removed, the
cells do not move.
10. Pili are structures made of protein that project from the surfaces of some types of
bacterial cells. Hair like structures are shorter than flagella and are used for
adherence.
11. Cytoskeleton is the collective name for protein filaments that play roles in cell
division or in maintaining the shapes of cells.
There are several other organelles whose boundary membranes separate their specialized chemical
reactions and contents from the cytoplasm: peroxisomes, glyoxysomes, and vacuoles, including
contractile vacuoles.
10. Vacuoles occur in many eukaryotic cells but particularly those of plants, fungi, and protests.
Plant vacuoles have several functions: Storage, Structure, Reproduction, Digestion.
11. Cytoskeleton supports the cell and maintains its shape. It holds cell organelles and other
particles in position within the cell. It moves organelles and other particles around in the cell. It
is involved with movements of the cytoplasm, called cytoplasmic streaming. It interacts with
extracellular structures, helping anchor the cell in place.
There are three components of the eukaryotic cytoskeleton. They have very different
functions.
1) microfilaments (smallest diameter),
2) intermediate filaments, and
3) microtubules (largest diameter).
Cell Membranes
A. What is the structure of a biological membrane?
The physical organization and functioning of all biological membranes depend on their
constituents: lipids, proteins, and carbohydrates.
The lipids establish the physical integrity of the membrane and create an effective barrier to
the rapid passage of hydrophilic materials such as water and ions.
In addition, the phospholipid bilayer serves as a lipid “lake” in which a variety of proteins
“float”. This general design is known as the fluid mosaic model. It is mosaic because it is
made up of many discrete components, and fluid because they can move freely.
C. Lipids
Up to 25 percent of the lipid content of an animal cell plasma membrane may be the steroid
cholesterol. Cholesterol preferentially associates with saturated fatty acids. When present,
cholesterol is important for membrane integrity; the cholesterol in your membranes is not
hazardous to your health.
D. Membrane Proteins
All biological membranes contain proteins. There are two general types of membrane
proteins: peripheral proteins and integral proteins.
1) Peripheral membrane proteins lack exposed hydrophobic groups and are not
embedded in the bilayer. Instead, they have polar or charged regions that interact
with exposed parts of integral membrane proteins, or with the polar heads of
phospholipid molecules
2) Integral membrane proteins are at least partly embedded in the phospholipid
bilayer. Like phospholipids, these proteins have both hydrophilic and hydrophobic
regions (domains)
Hydrophilic domains: Stretches of amino acids with hydrophilic side chains give certain
regions of the protein a polar character. These hydrophilic domains interact with water and
stick out into the aqueous environment inside or outside the cell.
Hydrophobic domains: Stretches of amino acids with hydrophobic side chains give other
regions of the protein a nonpolar character. These domains interact with the fatty acids in
the interior of the phospholipid bilayer, away from water.
E. Transmembrane proteins
Proteins are asymmetrically distributed on the inner and outer surfaces of membranes.
An integral protein that extends all the way through the phospholipid bilayer and protrudes
on both sides is known as a transmembrane protein.
Peripheral membrane proteins are located on one side of the membrane or the other.
This asymmetrical arrangement of membrane proteins gives the two surfaces of the
membrane different properties.
Like lipids, some membrane proteins move around relatively freely within the phospholipid
bilayer.
When two cells are fused, a single continuous membrane forms and surrounds both cells,
and some proteins from each cell distribute themselves uniformly around this membrane
The cytoskeleton may have components just below the inner face of the membrane that are
attached to membrane proteins protruding into the cytoplasm. The stability of the
cytoskeletal components may thus restrict movement of attached membrane proteins.
H. Membrane Transport
Biological membranes allow some substances, but not others, to pass through them. This
characteristic of membranes is called selective permeability. Selective permeability allows
the membrane to determine what substances enter or leave a cell or organelle.
There are two fundamentally different processes by which substances cross biological
membranes:
1) Passive Transport - do not require the input of chemical energy to drive them
2) Active Transport - require the input of chemical energy (metabolic energy).
A. Energy
Chemical Reaction occurs when atoms have sufficient energy to combine or change their
bonding partners.
ex. the hydrolysis of the disaccharide sucrose to its component monomers, glucose and
fructose, we can express this reaction by a chemical equation:
Sucrose + H2O → glucose + fructose
(C12H22O11) (C6H12O6) (C6H12O6)
Reactants = sucrose and water
products = glucose and fructose
Metabolism is the sum total of all the chemical reactions occurring in a biological system at a
given time. Metabolic reactions involve energy changes; for example, the energy contained in
the chemical bonds of sucrose (reactants) is greater than the energy in the bonds of the two
products, glucose and fructose.
B. What is energy?
Physicists define it as the capacity to do work, which occurs when a force operates on an object
over a distance.
In biochemistry, it is more useful to consider energy as the capacity for change.
In biochemical reactions, energy changes are usually associated with changes in the chemical
compositions and properties of molecules.
Two basic types of ENERGY:
1) Potential Energy is the energy of state or position—that is, stored energy. It can be
stored in many forms: in chemical bonds, as a concentration gradient, or even as an
electric charge imbalance.
2) Kinetic Energy is the energy of movement—that is, the type of energy that does work,
that makes things change. For example, heat causes molecular motions and can even
break chemical bonds.
Potential energy can be converted into kinetic energy and vice versa, and the form that the
energy takes can also be converted.
C. Metabolism
There are two basic types of metabolism:
1) Anabolic reactions (collectively anabolism) link simple molecules to form more complex
molecules (for example, the synthesis of sucrose from glucose and fructose). Anabolic
reactions require an input of energy.
Energy is captured in the chemical bonds that are formed (for example, the glycosidic bond
between the two monosaccharides). This captured energy is stored in the chemical bonds as
potential energy.
2) Catabolic reactions (collectively catabolism) break down complex molecules into
simpler ones and release the energy stored in the chemical bonds. For example, when
sucrose is hydrolyzed, energy is released. In a biological system the released energy may
be recaptured in new chemical bonds, or it may be used as kinetic energy—moving
atoms, molecules, cells, or the whole organism.
Catabolic and anabolic reactions are often linked. The energy released in catabolic reactions is
often used to drive anabolic reactions—that is, to do biological work. For example, the energy
released by the breakdown of glucose (catabolism) is used to drive anabolic reactions such as
the synthesis of triglycerides. This is why you accumulate fat if you eat food in excess of your
energy requirements.
E. ATP
An ATP molecule consists of the nitrogenous base adenine bonded to ribose (a sugar), which is
attached to a sequence of three phosphate groups
An active cell requires the production of millions of molecules of ATP per second to drive its
biochemical machinery. You are already familiar with some of the activities in the cell that
require energy from the hydrolysis of ATP:
1) Active transport across a membrane
2) Condensation reactions that use enzymes to form polymers
3) Modifications of cell signaling proteins by protein kinases
4) Motor proteins that move vesicles along microtubules
F. Enzymes
Enzymes are protein catalysts that affect the rates of biological reactions by lowering the energy
barrier, supplying the activation energy (Ea) needed to initiate reactions.
A substrate binds to the enzyme’s active site—the site of catalysis—forming an enzyme–
substrate (ES) complex. Enzymes are highly specific for their substrates
How do Enzymes Work?
At the active site, a substrate can be oriented correctly, chemically modified, or strained. As a
result, the substrate readily forms its transition state, and the reaction proceeds. Binding
substrate causes many enzymes to change shape, exposing their active site(s) and allowing
catalysis. The change in enzyme shape caused by substrate binding is known as induced fit.
Some enzymes require other substances, known as cofactors, to carry out catalysis. Prosthetic
groups are permanently bound to enzymes; coenzymes are not. A coenzyme can be considered
a substrate, as it is changed by the reaction and then released from the enzyme. Substrate
concentration affects the rate of an enzyme-catalyzed reaction.
How Are Enzyme Activities Regulated?
Metabolism is organized into pathways in which the product of one reaction is a reactant for
the next reaction. Each reaction in the pathway is catalyzed by a different enzyme. Enzyme
activity is subject to regulation. Some inhibitors bind irreversibly to enzymes. Others bind
reversibly. An allosteric effector binds to a site other than the active site and stabilizes the
active or inactive form of an enzyme.
How Are Enzyme Activities Regulated?
The end product of a metabolic pathway may inhibit an enzyme that catalyzes the commitment
step of that pathway. Reversible phosphorylation is another important mechanism for
regulating enzyme activity. Enzymes are sensitive to their environments. Both pH and
temperature affect enzyme activity.