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BIO 345 S18 Chapter 6 S19 (Flipped) S20 - True of False Answers Included - S21
BIO 345 S18 Chapter 6 S19 (Flipped) S20 - True of False Answers Included - S21
BIO 345
CELL & MOLECULAR BIOLOGY
1
Dr. Mohamad RIMA Session # 19, 20, 21
Q/A (1)
• What are the 3 states of a receptor/channel ?
Q/A (1)
• What are the 3 states of a receptor/channel ?
1-Closed/Resting
2-Open/Activated
3-Desensitized
Q/A (2)
• What are the characteristics of cell signaling ?
Q/A (2)
• What are the characteristics of cell signaling ?
1- Specificity
2- Amplification
3- Desensitization
4- Integration
Overview
• Cells are able to respond to environmental
factors.
8
Overview
• Communication between cells in multicellular
organisms is mediated mainly by extracellular
signal molecules.
9
Signal transduction
• 3 stages:
1- Reception
2- Transduction
3- Response
10
Overview
• Based on the distance, signal can have different forms: Autocrine,
Paracrine, and endocrine.
Paracrine Cells that are near one another communicate i.e., Synaptic signaling
through the release of chemical messengers
Autocrine A cell signals to itself i.e., Secretion of IL-1 by
macrophages
Endocrine When cells need to transmit signals over long i.e., Hormones
distances
Direct Contact The transfer of signaling molecules transmits i.e., Gap junctions, Antigen-
the current state of one cell to its neighbor. This presenting cells.
allows a group of cells to coordinate their
response to a signal that only one of them may
have received
12
Features of signal transduction (1)
Features of signal transduction (1)
Specificity
• This is the first line of defense: Molecule should interact only with the
appropriate targets.
• For example: Protein kinases contain active sites that recognize a specific a.a sequence around the
phosphorylation site on the correct target, and they often contain additional docking sites that
promote a specific, high-affinity interaction with the target.
Features of signal transduction (2)
Features of signal transduction (2)
Amplification
Convert a simple signal into
a complex response.
Features of signal transduction (3)
?
Features of signal transduction (3)
Desensitization
Example : Too much glutamate (neurotransmitter) in the brain -> overexcited nerve cells -> brain cell damage
Features of signal transduction (4)
Integration
Features of signal transduction
• Specificity
• Amplification
• Desensitization
• Integration
21
Signal molecules and receptors
• Small hydrophobic molecules diffuse across the PM and bind to
receptors inside the target cell (either in the cytosol or in the nucleus).
22
Signal molecules and receptors
23
Signal molecules and receptors
• 3 classes of signal transducers:
(A) Ion-channel-coupled receptors
(transmitter-gated ion channels or
ionotropic receptors)
(B) G-protein-coupled receptors
(C) Enzyme-coupled receptors
24
Signal molecules and receptors
25
Receptors
Ion-channel-coupled receptors
Transmitter or ligand-gated ion channels / ionotropic receptors
Ion-channel-coupled receptors
Transmitter or ligand-gated ion channels / ionotropic receptors
27
Receptors
Ion-channel-coupled receptors
28
Receptors
Ion-channel-coupled receptors
Transmitter or ligand-gated ion channels / ionotropic receptors
29
Receptors
Ion-channel-coupled receptors
Transmitter or ligand-gated ion channels / ionotropic receptors
30
Receptors
Ion-channel-coupled receptors
Transmitter or ligand-gated ion channels / ionotropic receptors
G-protein-coupled receptors
31
Receptors
32
Receptors
G-protein-coupled receptors
• Indirectly regulate the activity of a separate target protein (enzyme or ion
channel).
• The interaction between the activated receptor and the target protein is
mediated by trimeric GTP-binding protein (G protein).
• The activation of the target protein can (i) change the concentration of
small intracellular signaling molecules, or (ii) change ion permeability of
the plasma membrane.
33
Receptors
Enzyme-coupled receptors
• Function as enzymes or associate directly with enzymes that they
activate.
35
Cell response (True or False)
• One cell is exposed to hundreds of different signal molecules in its
environment.
36
Cell response (True or False)
• One cell is exposed to hundreds of different signal molecules in its
environment.
37
Cell response (True or False)
• One cell is exposed to hundreds of different signal molecules in its
environment.
38
Cell response
• Cell often requires multiple signals to
survive (blue arrows) and additional
signals to grow and divide (red arrows)
or differentiate (green arrows).
39
Cell response (True or False)
• Each signal molecule is specific to each cell type (they can’t have
effects on different types of target cells).
40
Cell response (True or False)
• Each signal molecule is specific to each cell type (they can’t have
effects on different types of target cells)
One signal molecule often has different effects on different types of
target cells.
41
Cell response (True or False)
• Each signal molecule is specific to each cell type (they can’t have
effects on different types of target cells)
One signal molecule often has different effects on different types of
target cells.
42
Cell response (True or False)
• Each signal molecule is specific to each cell type (they can’t have
effects on different types of target cells)
One signal molecule often has different effects on different types of
target cells.
43
Cell response
The different effects of acetylcholine.
An extracellular signal itself has little information content; it simply induces the
cell to respond according to its predetermined state. 44
The intracellular signaling
• Signals bind cell-surface receptors and
activate intracellular signaling molecules.
47
Intracellular signaling
Signaling by phosphorylation
• Largest class of signal molecules consists of proteins
that are activated or inactivated by phosphorylation.
50
True or False
• Eukaryotic cells are characterized by their expression of one kinase
and one phosphatase.
The human genome encodes about 520 protein kinases and about 150
protein phosphatases (ex. Serine/threonine kinases, tyrosine kinases).
NOT all molecular switches depend on phosphorylation or GTP binding
(AMP and Ca2+ or ubiquitylation)
51
True or False
• Eukaryotic cells are characterized by their expression of one kinase
and one phosphatase.
The human genome encodes about 520 protein kinases and about 150
protein phosphatases (ex. Serine/threonine kinases, tyrosine kinases).
52
True or False
• Eukaryotic cells are characterized by their expression of one kinase
and one phosphatase.
The human genome encodes about 520 protein kinases and about 150
protein phosphatases (ex. Serine/threonine kinases, tyrosine kinases).
53
Signal-response relation
The response persistence is variable and regulated (reversible):
• Ex. Transient response (< second) is present in some synapses.
• Ex. Prolonged or permanent response is required in cell fate decisions
during development.
• The duration and reversibility of a response are regulated by
numerous mechanisms (i.e., positive or negative feedback).
54
Signal-response relation
• Signal processing: i.e., Simple signal is converted into an oscillatory
response, via a repeating series of transient intracellular signals.
56
Signal-response speed
All responses have the same speed ? No
• Extracellular signal can lead to slow or rapid responses.
57
Signal-response speed
58
Signal-response speed
• Slow: If the response requires changes in
gene expression and synthesis of new
proteins.
i.e., cell growth and division.
60
Changing sensitivity to signal
• Cells and organisms are able to detect changes in the concentrations of
an extracellular signal molecule.
62
Changing sensitivity to signal
• Different forms of adaptation:
1. Inactivation of the receptors (i.e., by phosphorylation)
2. Receptor endocytosis and temporary sequestration in endosomes.
3. Receptor endocytosis followed by the destruction of the receptors in lysosomes
(receptor down-regulation). (In other cases, activated receptors continue to signal
after they have been endocytosed).
4. Changes in intracellular signaling proteins involved in signal transduction.
5. Production of an inhibitor protein that blocks the signal.
63
True or false
• Cells can emit and receive signals.
64
True or false
• Cells can emit and receive signals.
65
True or false
• Cells can emit and receive signals.
66
Receptors
G-protein-coupled receptors
• Largest family of cell-surface receptors.
Half of known drugs work through GPCRs or their signaling pathways.
• Diversity : more than 800 GPCRs in humans, and in mice ~ 1000 responsible of
smelling only.
67
Receptors
G-protein-coupled receptors
• They can be activated by broad scale of molecules :
Proteins, small peptides, derivatives of a.a and fatty acids, photons and
molecules that can be sensed.
• The same signal molecule can activate many different GPCRs (i.e., adrenaline).
68
Receptors
G-protein-coupled receptors
• Trimeric GTP-binding protein (G proteins) are composed of three
subunits, α, β, and γ. G proteins have similar structure and mechanism.
G-protein-coupled receptors
Molecular mechanism
G-protein-coupled receptors
Molecular mechanism
• The α subunit is a GTPase and becomes inactive when it hydrolyzes GTP to GDP.
• GTP hydrolysis is quick because this GTPase activity of α subunit is greatly enhanced by
the binding of second protein, which can be either the target protein or a specific
regulator of G protein signaling (RGS).
71
Receptors
G-protein-coupled receptors
Downstream effectors
72
GPCRs
cAMP
as second messengers
73
GPCRs
cAMP
as second messengers
74
GPCRs
cAMP
as second messengers
75
GPCRs
cAMP
as second messengers
76
GPCRs
cAMP
as second messengers
cAMP
as second messengers
78
GPCRs
cAMP
as second messengers
79
GPCRs
cAMP
as second messengers
80
GPCRs
cAMP
as second messengers
• They can directly activate/inactivate ion channels; therefore, altering ion permeability
and hence the electrical excitability of the membrane.
• Ex: Acetylcholine (Ach) released by the vagus nerve reduces the heart rate. This effect is
mediated by a special class of Ach receptors that activate the Gi protein:
➢ α subunit of Gi inhibits adenylyl cyclase
Inhibitory effect of acetylcholine on the heart
➢ βγ subunits bind to K channels
+
82
GPCRs
83
Receptors
Enzyme-coupled receptors
• Transmembrane proteins characterized by extracellular ligand-binding
domain and intracellular catalytic domain or enzyme-linked domain.
84
Enzyme-coupled receptors
85
Enzyme-coupled receptors
• Binding of the signal to the ligand-binding domain brings two monomers together and
activates the tyrosine kinase domain.
• These phosphorylations promotes the complete activation of the domains and create
phosphotyrosine docking sites for various intracellular signaling proteins that transmit
the signal.
86
Enzyme-coupled receptors
87
Enzyme-coupled receptors
89
Enzyme-coupled receptors
90
Receptors
91
Alternative signaling routes in gene expression
• The receptor Notch
• Diffusing Extracellular signals
92
Alternative signaling
94
Alternative signaling
• Although their chemical and functional differences, they act by a similar mechanism:
They bind to their respective intracellular receptors and alter their abilities to control the
gene transcription. Thus, these proteins serve as intracellular receptors and intracellular
effectors for the signal.
• The receptors are all structurally related, being part of nuclear receptor superfamily.
96