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FieldPlant A Dataset of Field Plant Images For Pla
FieldPlant A Dataset of Field Plant Images For Pla
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ABSTRACT The Food and Agriculture Organization of the United Nations suggests increasing the food
supply by 70% to feed the world population by 2050, although approximately one third of all food is wasted
because of plant diseases or disorders. To achieve this goal, researchers have proposed many deep learning
models to help farmers detect diseases in their crops as efficiently as possible to avoid yield declines. These
models are usually trained on personal or public plant disease datasets such as PlantVillage or PlantDoc.
PlantVillage is composed of laboratory images captured under laboratory conditions, with one leaf each
and a uniform background. The models trained on this dataset have very low accuracies when running on
field images with complex backgrounds and multiple leaves per image. To solve this problem, PlantDoc
was built using 2,569 field images downloaded from the Internet and annotated to identify the individual
leaves. However, this dataset includes some laboratory images and the absence of plant pathologists during
the annotation process may have resulted in misclassification. In this study, FieldPlant is suggested as a
dataset that includes 5,170 plant disease images collected directly from plantations. Manual annotation of
individual leaves on each image was performed under the supervision of plant pathologists to ensure process
quality. This resulted in 8,629 individual annotated leaves across the 27 disease classes. We ran various
benchmarks on this dataset to evaluate state-of-the-art classification and object detection models and found
that classification tasks on FieldPlant outperformed those on PlantDoc.
INDEX TERMS Deep learning, Field images, Laboratory images, Plant disease dataset, Plant disease
detection and classification
VOLUME 4, 2016 1
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content may change prior to final publication. Citation information: DOI 10.1109/ACCESS.2023.3263042
Emmanuel Moupojou et al.: FieldPlant: A dataset of field plant images for plant disease detection and classification with deep learning
and Machine Learning. Therefore, many deep Convolutional individual leaf annotations across 27 disease classes. This
Neural Networks (CNN) have been proposed by researchers dataset is intended for researchers to build models that offer
for plant disease identification and classification; some of the practical solutions to farmers for plant disease identification
most popular CNN are highlighted by Adi et al. [5]. The and classification under real conditions.
purpose of these solutions is to provide farmers with a way
to identify diseases that attack plants as soon as possible and II. RELATED WORK
suggest countermeasures to avoid crop losses. A. PLANT DISEASE DETECTION DATASETS
The PlantVillage [2], iBean [6], citrus [7], rice [8], cassava Although there are several datasets related to plant diseases,
[9], and AI Challenger 2018 datasets [10] are among the most PlantVillage and PlantDoc remain the two most publicly
widely used plant disease datasets, with available laboratory available.
images. These datasets have been widely used to train CNN
for plant disease identification and classification. Neural 1) PlantVillage
networks trained on these datasets were able to achieve a PlantVillage [2] is the largest plant disease dataset. The initial
high classification accuracy during training. However, when data records for 2016 contained 54,309 images spanning
these systems were tested under real field conditions, their 14 crop species including- apple, blueberry, cherry, corn,
performance decreased sharply. This is because in contrast grape, orange, peach, bell pepper, potato, raspberry, soy-
to laboratory images, field images have complex background bean, squash, strawberry, and tomato. These expertly cu-
features, including other leaves, stems, fruits, soil, and mulch. rated images of healthy and infected crop leaves were made
Studies have demonstrated that complex backgrounds in field available through the existing online platform, PlantVillage
images significantly contribute to this drop in performance, (www.plantvillage.org). Diseases affecting these plants are
and that background removal can enhance disease recogni- divided into 17 fungal diseases, four bacterial diseases, two
tion accuracy [11]. mold (oomycete) diseases, two viral diseases, and one mite
Therefore, plant disease classification systems trained on disease. The dataset contains 38 classes of plant diseases and
laboratory images are not usable in practice owing to the one class of background images, as shown in Fig. 2.
structural difference between laboratory and field images This initial data setup was the beginning of an ongoing
[12] [13] [11]. Laboratory images were captured under con- crowdsourcing effort to enable computer vision approaches
trolled lighting and uniform background conditions, with to solve the problem of yield losses in crop plants owing to
each image containing only one leaf. Field images typically infectious diseases.
have several interwoven leaves, stems, branches, flowers, From fields with crops infected with the disease, techni-
non-leaf objects, and complex backgrounds, as illustrated in cians collected leaves by removing them from the plant and
Fig. 1. Li et al. [14] highlighted in their study the need to placing them against a paper sheet that provided a grey or
establish a large dataset of plant diseases in field conditions black background. All the images were captured under full il-
for plant disease detection. Indeed, researchers need to test lumination. Once the images were collected, they were edited
their models on datasets acquired from fields [15] to provide by cropping away much of the background and orientating
practical solutions to farmers to address crop losses. all leaves such that they tip pointed upward, as shown in Fig.
To address this challenge, Singh et al. [4] proposed a 3. The images from this dataset are referred to as laboratory
dataset of field images called PlantDoc, a dataset for visual images.
plant disease detection containing 2,598 data points across
13 plant species and up to 17 classes of diseases. Although 2) PlantDoc
it contains many laboratory images, PlantDoc has been used PlantDoc [4] is a dataset of 2,569 images across 13 plant
in some studies on plant disease detection, but has achieved species (apple, bell pepper, blueberry, cherry, corn, grape,
very low performance [13]. Because of the lack of extensive peach, potato, raspberry, soyabean, squash powder, straw-
domain expertise, some images in this dataset may be incor- berry, and tomato) and 30 classes (diseased and healthy) for
rectly classified [4]. The major challenge in plant disease image classification and object detection. The distribution of
identification from field images is to build a sufficiently images of plant species and diseases is shown in Fig. 4.
accurate model to identify the plant involved in the image PlantDoc contains field plant disease images downloaded
and the associated disease, which is a complicated task. from the internet and annotated to train models for detecting
In this study, we propose FieldPlant1 as a new dataset for crop diseases from field condition images, as shown in Fig.
the identification and classification of plant diseases from 5. Because the images in the dataset were downloaded from
field images captured under different lighting conditions. The the internet, they were generally of poor quality, and some
5,170 original images captured in plantations were annotated images contained leaves that had not been photographed on
using the RoboFlow on-line platform [16], to identify the plants and were more akin to laboratory images as shown
individual leaves. Some images had only one leaf to annotate in Fig. 6. However, for the annotations of images made
and others had multiple leaves to annotate, resulting in 8,629 without the assistance of plant pathologists, it is very likely
that annotation errors slipped into the dataset [4] because
1 https://universe.roboflow.com/plant-disease-detection/fieldplant certain plant diseases are very similar in appearance. Finally,
2 VOLUME 4, 2016
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content may change prior to final publication. Citation information: DOI 10.1109/ACCESS.2023.3263042
Emmanuel Moupojou et al.: FieldPlant: A dataset of field plant images for plant disease detection and classification with deep learning
FIGURE 1. Some plant disease images under laboratory and field conditions [13]
FIGURE 3. Apple scab leaf from the PlantVillage dataset 1) Pre-built Models
In many cases, the authors used existing state-of-the-art con-
volutional neural networks to address the problem of plant
the number of annotated images in different categories is disease identification and classification. When the models
generally insufficient for training models that are capable of were not completely re-trained because of insufficient data
achieving high accuracy. or missing computational power, transfer learning was used
VOLUME 4, 2016 3
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content may change prior to final publication. Citation information: DOI 10.1109/ACCESS.2023.3263042
Emmanuel Moupojou et al.: FieldPlant: A dataset of field plant images for plant disease detection and classification with deep learning
2) Authors-built Models
Often, specific constraints such as preprocessing steps, net-
work architecture, or dataset structure have led the authors to
suggest specific models for plant disease detection.
Asad et al. [22] proposed a 2-layers CNN model that
extracts complementary discriminative features from cit-
rus fruits and leaves by integrating multiple layers. The
model differentiated healthy fruits and leaves from fruits or
leaves with common citrus diseases, such as black spots,
canker, scab, greening, and melanose, with a test accuracy
of 94.55%. The dataset used in this study contained only 213
images from the PlantVillage [2] and Citrus [7] datasets.
The unwanted background and noise of the input image
can have a significant negative impact on the model accuracy.
To overcome this problem, the study in [23] used U 2 -Net
by first producing a mask of the region of interest from
FIGURE 4. Statistics of PlantDoc dataset leaves diseases [4]
the original image. Then, a bitwise operation was applied
to the original image and mask produced by U 2 -Net. The
EfficientNetV2 [24] model was used for cardamom plant
disease detection, achieving a detection accuracy of 98.26%.
To reduce the number of parameters of the model, Amin et
al. [25] used two pre-trained convolutional neural networks,
EfficientNetB0 and DenseNet121, to extract deep features
-
from corn plant images. The extracted deep features from
each CNN were then fused using the concatenation technique
to produce a more complex feature set, from which the
FIGURE 5. PlantDoc annotated model could learn the dataset better, achieving a classification
field tomato leaves image FIGURE 6. PlantDoc annotated
lab strawberry leaves image accuracy of 98.56% on a subset of the PlantVillage dataset.
To reduce the neural network training time, Sk et al. [26]
suggested a reduction in the model parameters based on the
to maintain the pre-trained weights and reduce computation inception layer, residual connection, and depth-wise separa-
time. ble convolution. The accuracies obtained for the PlantVillage,
To take advantage of existing neural networks trained rice [8] and cassava [9] datasets were 99.39%, 99.66%, and
on large datasets, stepwise transfer learning was used by 76.59%, respectively.
Ahmad et al. [12] on pre-trained neural networks to avoid Zhou et al. [27] proposed a hybrid deep learning model
negative transfer learning. They used MobileNetV2 [17] pre- that combines the advantages of deep residual networks and
trained weights to build the model and achieved 99% and dense networks to reduce the number of training process pa-
99.69% accuracy on the Pepper and PlantVillage datasets, rameters and improve calculation accuracy. The experimental
respectively. results show that this model can achieve a top-1 average
Elfatimi et al. [18] presented a deep learning approach for identification accuracy of 95% on the tomato test dataset in
classifying bean leaf diseases. The model was trained using the AI Challenger 2018 dataset [10].
MobileNetV2 [17] architecture under controlled conditions Wang et al. [13] suggested a dual-stream hierarchical
to obtain faster training times, higher accuracy, and easier bilear-pooling model for the multi-task classification of
retraining. To achieve these goals, the authors attempted plant diseases. The authors used fine-grained image recogni-
different hyper parameters and optimization methods. The tion methods to extract discriminative fine-grained features,
model achieved an accuracy of 97% for 1296 field images thereby enhancing the representation capability of the model.
taken from the iBean dataset [6]. The PlantDoc dataset [4] was used for the experiment, and
The YOLO [19] neural network has been one of the great- after optimizing multi-task learning using homoscedastic
est achievements in object detection in the field of Artificial uncertainty, the plant and disease accuracies obtained were
Intelligence. The study [20] used YoloV3 [21] ] and achieved 84.71% and 75.06%, respectively.
4 VOLUME 4, 2016
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content may change prior to final publication. Citation information: DOI 10.1109/ACCESS.2023.3263042
Emmanuel Moupojou et al.: FieldPlant: A dataset of field plant images for plant disease detection and classification with deep learning
3) Practical solutions for plant disease detection major staple food in the developing world, providing a basic
Based on deep learning models, two main mobile apps for diet for over half a billion people [35].
plant disease detection have emerged in the community: The different diseases represented in the dataset for cas-
Plantix and PlantVillage Nuru. sava crops are as follow: Cassava Bacterial Disease Cassava
Plantix [28] is a smartphone application trained to identify Brown Leaf Spot, Cassava Healthy, Cassava Mosaic and
a large range of plant diseases. Users snap a cropped image Cassava Root Rot.
using their phone, which sends the image to the server to
perform an analysis using its on-line deep learning model. 2) Corn
The results are reported back to the phone with suggestions Corn has become a staple food in many parts of the world,
for suitable countermeasures. Although the image dataset and with the total production of corn surpassing those of wheat
the deep learning model of Plantix are not available, Gon- and rice. Corn is cultivated worldwide, and more corn is
charov et al. [29] conducted a study showing that the model produced each year than, any other grain. In 2021, total world
could identify plants with an accuracy of 87%. However, production was 1.2 billion tonnes [36].
only 10% of the diseased images had the correct disease at The different diseases represented in the dataset for corn
the top of their suggestions. Plantix also requires an internet crops are: Corn Leaf Blight, Corn Brown Spots, Corn Gray
connection to use image analysis features. This can be a Leaf Spot, Corn Charcoal, Corn Chlorotic Leaf Spot, Corn
limitation for farmers working in remote areas where internet Healthy, Corn Insects Damages, Corn Mildew, Corn Purple
access might not be available. Discoloration, Corn Rust leaf, Corn Smut, Corn Streak, Corn
PlantVillage Nuru [30]] is another smartphone app for Stripe, Corn Violet Decoloration, Corn Yellow Spots and
plant disease detection that was developed under the Corn Yellowing.
PlantVillage [4] Project. It uses a single-shot multibox de-
tector (SSD) with MobileNet to detect and classify plant 3) Tomato
diseases [31]. PlantVillage Nuru requests that the user submit Numerous varieties of tomatozq are grown in temperate
six plant leaves for better classification and can run without climates worldwide, with greenhouses allowing their pro-
an Internet connection. SSD detectors localize the diseased duction throughout all seasons of the year. Cameroon is
areas using bounding boxes. However, various studies [32] the world’s tenth largest tomato producer, with an estimated
[33] have reported that the accuracy of SSD detectors for annual production of 1,279,853 tons [37].
plant disease detection is low. Mrisho et al. [34] showed The different diseases represented in the dataset for cas-
that Nuru’s accuracy for symptom recognition when using sava crops are: Tomato Alternaria, Tomato Brown Spots,
six leaves (74-88%, depending on the condition) was similar Tomato Leaf Yellow Virus, Tomato Blight Leaf, Tomato Leaf
to that of experts, 1.5 times higher than agricultural extension Mosaic Virus, Tomato Rust, Tomato Sclerotinia, Tomato
agents and two times higher than that of farmers. Bacterial Wilt and Tomato Healthy.
A literature review of CNN used for plant disease identifi-
cation and classification is presented in Table 1. B. DATA COLLECTION WORKFLOW
Fig. 8 shows the workflow used for the FieldPlant dataset set
III. THE FIELDPLANT DATASET up.
We released FieldPlant, a plant disease dataset of 5,170 Crop disease images were collected from Zones 3 and 5 of
annotated field leaf images collected from the Cameroon the five agro-ecological zones in Cameroon (Fig. 9). Images
plantations. The dataset focuses on various diseases in three were collected under the supervision of plant pathologists
tropical cultures: corn, cassava, and tomato. To the best of our at different periods of the year and stages of plant growth.
knowledge, this is the first publicly available dataset for plant The aim of this procedure was to capture the most diseases
disease detection that uses annotated cassava images. This possible, given that we do not have the same crop diseases
dataset can be used to train efficient models for plant disease in different agro-ecological zones and that they often oc-
detection using field images and object-detection models. cur at different periods of the year. Images were captured
using smartphones with 4608 × 3456 (4:3) pixel-resolution
A. DATASET CROPS AND DISEASES cameras. This was done to benefit from the flexibility and
The distribution of Fieldplant images diseases is shown in autofocus. Leaf images were captured directly from plants
Fig. 7. with a full plantation background, and usually had more than
one leaf per image.
1) Cassava Once images are collected in the field, they are made
Cassava is a root vegetable that is widely consumed in available to the plant pathologist, who then groups them into
many countries worldwide. It is extensively cultivated as an folders according to the plant and the disease identified on the
annual crop in tropical and subtropical regions because of leaf. Blurred images or images irrelevant to the study were
its edible starchy tuberous root, which is a major source of ignored.
carbohydrates. Cassava is the third-largest source of food A data scientist used the RoboFlow online platform tool
carbohydrates in the tropics after rice and maize. Cassava is a (https://roboflow.com/) to annotate images. Each image was
VOLUME 4, 2016 5
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This article has been accepted for publication in IEEE Access. This is the author's version which has not been fully edited and
content may change prior to final publication. Citation information: DOI 10.1109/ACCESS.2023.3263042
Emmanuel Moupojou et al.: FieldPlant: A dataset of field plant images for plant disease detection and classification with deep learning
1 Plant disease Pepper dataset MobileNetV2 99% High accuracies were reached but lab images used for
[12] detection PlantVillage 99.69% training
2 Classify beans 1296 field images MobileNetV2 97% Dataset images are individual leaves cut from the plant
[18] leaf disease from iBean and held in the hand
4 Plant disease 213 images from 2-layers CNN 94.55% High accuracy on a small dataset
[22] detection PlantVillage and Lab images used for training, the model will have low
Citrus datasets performance with field images
5 Detection of 5 1724 Cardamom U 2 -Net 98.26% U 2 -Net is used for background removal to keep a single
[23] citrus fruits and field leaves EfficientNetV2 leaf on the image which is suitable for classification
leaves diseases
6 Corn leaf dis- PlantVillage EfficientNetB0 98.56% More complex features captured by fusion; Lab images
[25] ease classifica- DenseNet121 used for training, low performance expected on field
tion Features concate- images
nation
8 Tomato 13.185 images Hybrid CNN 95% Requires less computation to achieve high performance
[27] leaf disease from Tomato Lab images used for training, low performance expected
identification dataset on field images
9 Plant classifica- PlantDoc Dual-stream 84.71% Identify field plants and diseases
[13] tion hierarchical 75.06% Low accuracy
Disease classi- bilinear pooling
fication model
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content may change prior to final publication. Citation information: DOI 10.1109/ACCESS.2023.3263042
Emmanuel Moupojou et al.: FieldPlant: A dataset of field plant images for plant disease detection and classification with deep learning
This work is licensed under a Creative Commons Attribution 4.0 License. For more information, see https://creativecommons.org/licenses/by/4.0/
This article has been accepted for publication in IEEE Access. This is the author's version which has not been fully edited and
content may change prior to final publication. Citation information: DOI 10.1109/ACCESS.2023.3263042
Emmanuel Moupojou et al.: FieldPlant: A dataset of field plant images for plant disease detection and classification with deep learning
Western High Plateau Dschang & Bamendou October 2022 481 288 236 1005
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content may change prior to final publication. Citation information: DOI 10.1109/ACCESS.2023.3263042
Emmanuel Moupojou et al.: FieldPlant: A dataset of field plant images for plant disease detection and classification with deep learning
CNN Model Training Test Acc. CNN Model Training Test Acc.
set(%) set(%) set(%) set(%)
TABLE 3. Plant disease classification benchmark on raw images C-PD(80) C-PD(20) 44,82
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Emmanuel Moupojou et al.: FieldPlant: A dataset of field plant images for plant disease detection and classification with deep learning
the results obtained from evaluations involving FieldPlant [5] Manivarsh Adi, Abhishek Kumar Singh, Harinath Reddy, Yeshwanth
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This article has been accepted for publication in IEEE Access. This is the author's version which has not been fully edited and
content may change prior to final publication. Citation information: DOI 10.1109/ACCESS.2023.3263042
Emmanuel Moupojou et al.: FieldPlant: A dataset of field plant images for plant disease detection and classification with deep learning
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[Online; accessed 08-November-2022]. in professional courses in the Computer Science
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Kar Hang Leung. Plant disease detection mobile application development been a lecturer at the Institut Universitaire Saint Jean du Cameroun (IUSJC).
using deep learning. In 2021 International Conference on Computer & He is the author of three articles, and one conference paper. His research
Information Sciences (ICCOINS), pages 34–38. IEEE, 2021. interests include: Artificial Intelligence, Configuration Management, and
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robust deep-learning-based detector for real-time tomato plant diseases
and pests recognition. Sensors, 17(9):2022, 2017.
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Annalyse Kehs, Peter McCloskey, Harun Murithi, David Hughes, and
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intelligence system, plantvillage nuru, in diagnosing of the viral diseases
of cassava. BioRxiv, 2020. APPOLINAIRE TAGNE was born in the West
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[36] Wikipedia. Maize - wikipedia. https://en.wikipedia.org/wiki/Maize, 2022. versity of Dschang Cameroon in 1988. His MSc
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and Agricultural University Copenhagen Denmark
[38] Matteo Perini, Mohamadou Nfor, Federica Camin, Silvia Pianezze, and in 1995 and 2001.
Edi Piasentier. Using bioelements isotope ratios and fatty acid composition From 2001 to date he has been a Senior Re-
to deduce beef origin and zebu feeding regime in cameroon. Molecules, searcher at the Institute of Agricultural Research
26:2155, 04 2021. for Developpement (IRAD) Cameroon, a Consultant at the World Food
[39] Karen Simonyan and Andrew Zisserman. Very deep convolutional net- and Agricultural Organization (FAO) working on plant Diseases Diagnostic
works for large-scale image recognition. arXiv preprint arXiv:1409.1556, Mapping and Data bases, a consultant at the Interafrican Phytosanitary
2014. Coiuncil of the African Union working on pesticides of plant origin. He
[40] Christian Szegedy, Vincent Vanhoucke, Sergey Ioffe, Jon Shlens, and is a Fellow Researcher of the European Network of Dirable Crop Protection
Zbigniew Wojna. Rethinking the inception architecture for computer (ENDURE) funded by the European Union, member of the academic teams
vision. In Proceedings of the IEEE conference on computer vision and of the UniLaSalle University in France and first author or co-authors of about
pattern recognition, pages 2818–2826, 2016. 50 scientific papers including book chapters and Proceedings. He is also a
[41] Christian Szegedy, Sergey Ioffe, Vincent Vanhoucke, and Alexander A reviewer of many scientific journals.
Alemi. Inception-v4, inception-resnet and the impact of residual connec-
tions on learning. In Thirty-first AAAI conference on artificial intelli-
gence, 2017.
[42] Yu Hongkun, Chen Chen, Du Xianzhi, Li Yeqing, Rashwan Abdullah, Hou
Le, Jin Pengchong, Yang Fan, Liu Frederick, Kim Jaeyoun, and Li Jing.
Tensorflow model garden. https://github.com/tensorflow/models, 2020.
[43] Peng Du, Xiujie Qu, Tianbo Wei, Cheng Peng, Xinru Zhong, and Chen
Chen. Research on small size object detection in complex background.
In 2018 Chinese Automation Congress (CAC), pages 4216–4220. IEEE,
2018.
[44] Yingdong Ma, Yuchen Liu, Shuai Liu, and Zhibin Zhang. Multiple object FLORENT RETRAINT received the Engineering
detection and tracking in complex background. International Journal of Diploma degree in computer science from the
Pattern Recognition and Artificial Intelligence, 31(02):1755003, 2017. Compiegne University of Technology, in 1993,
the M.S. degree in applied mathematics from EN-
SIMAG, in 1994, and the Ph.D. degree in applied
mathematics from the National Institute of Ap-
plied Sciences of Lyon, France, in 1998.
He held a postdoctoral position at CEA Greno-
ble for one year. He was a Research Engineer with
Thomson CSF for two years. Since 2002, he has
been with the Laboratory of System Modeling and Dependability, Troyes
University of Technology. He is currently a Full Professor. His research
interests include image modeling, statistical image processing, hypothesis
testing theory, and anomaly detection and localization.
VOLUME 4, 2016 11
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This article has been accepted for publication in IEEE Access. This is the author's version which has not been fully edited and
content may change prior to final publication. Citation information: DOI 10.1109/ACCESS.2023.3263042
Emmanuel Moupojou et al.: FieldPlant: A dataset of field plant images for plant disease detection and classification with deep learning
12 VOLUME 4, 2016
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