Professional Documents
Culture Documents
Molecular Basis of Inheritance
Molecular Basis of Inheritance
Molecular Basis of Inheritance
4
MOLECULAR BASIS OF INHERITANCE
* Prior to the work of Avery, MacLeod, and McCarty, the genetic material was thought to be
protein.
* In 1944, Oswald T Avery, Colin MacLeod and Maclyn McCarty revealed the chemical nature
of the transforming substance to be DNA. They showed that DNA isolated from heat killed S
bacteria could by itself confer the pathogenic properties to R cells. This fact suggested that DNA
has the genetic properties.
Hershey and Chase’s experiment demonstrating that only phage DNA injected in the host cell
determines all the characteristics of the progeny phage.
PROPERTIES OF GENETIC MATERIAL (DNA VS RNA)
* DNA as the genetic material was unequivocally resolved from Hershey-chase experiment.
* It became an established fact that it is DNA that acts as genetic material. However, it
subsequently became clear that in some viruses, RNA is the genetic material (for example,
Tobacco Mosaic viruses, QB bacteriophage, etc).
* Answer to some of the questions such as, why DNA is the predominant genetic material, where
as RNA performs dynamic functions of messenger and adapter has to be found from the differences
between chemical structures of the two nucleic acid molecules.
* A molecule that can act as a genetic material must fulfill the following criteria:
* It should be able to generate its replica (Replication).
* It should chemically and structurally be stable.
* It should provide the scope for slow changes (mutation) that are required for evolution.
* It should be able to express itself in the form of ‘Mendelian Characters’.
* Because of rule of base pairing and complementarity, both the nucleic acids (DNA and RNA) have
the ability to direct their duplications. The other molecules in the living system, such as proteins fail
to fulfill first cirteria itself.
* The genetic material should be stable enough not to change with different stages of life cycle, age
or with change in physiology of the organism.
* Stability as one of the properties of genetic material was very evident in Griffith’s ‘transforming
principle’ itself that heat, which killed the bacteria, at least did not destroy some of the properties
of genetic material.
Solved example
If hybrid DNA (N14 N15) is allowed to replicate thrice in a medium containing N14 then
what is the proportion of light heavy and hybrid DNA obtained respectively?
Solution
GENETIC CODE
* The set of all possible three nucleotide combinations in DNA/mRNA that determine the specific
amino acid sequence present in a polypeptide chain is called “Genetic code”
* The process of translation requires transfer of genetic information from a polymer of nucleotides to
a polymer of amino acids.
* George Gamow, a physicist argued that, since here are only 4 types of nitrogen bases either in DNA
or RNA and these 4 bases have to code for 20 types of amino acids, the code should constitute
a combination of bases and suggested that in order to code for all 20 amino acids, the code should
be made up of three nucleotides (triplet code). By permutation and combination of 4 different types
nucleotides would generate 64 codons i.e., 43(4x4x4=4)
* The Indian born American Scientist Har Gobind Khorana synthesised artificial RNA molecules with
defined combinations of bases such as UUU homopolymers and UUC, CCA(copolymers) and
helped to understand genetic code
* Marshal Nirenberg’s cell free system for protein synthesis finally helped the code to be deciphered
The enzyme polynucleotide phoshorylase was discovered by Ochoa and hence it is also known as
Ochoa’s enzyme. Which is helpful in polymerising RNA with defined sequences in a template
independent manner
* The code is triplt code i.e., 3 nucleotides form into one codon and one codon can specify
one amino acid
There are 64 triplet codons in codons dictionary out of which 61 are called sense codons and
three are nonsense codons.
* The codons which code for amino acids are called sense codons and the codons not coding
for amino acids are called non-sense codons or terminating codons (or) stop codons.
* One codon codes for one amino acid, hence it is unambiguious and specific
* Some amino acids are coded by more than one codon. Hence this type of code is called
degenerate code.
* The code is read on mRNA in a contiguous fashion : There are no punctuations.
ACCEPTOR ARM
The latter includes a constant 3' terminal - CCA sequence and fourth nucleotide, either A or
G. The amino acid molecule attaches to the 3' end of the base A, which is known a amino acid
binding site.
TC ARM
It consists of a stem having 5 base pairs and a loop of 7 nucleotides. The loop contains an
unusual base pseudouridine ( ) and hence the name. The loop is involved in binding with
ribosome and hence it is sometimes referred to as ribosomal loop.
VARIABLE ARM
It is of two types. In one type, there is a loop containing 4 to 5 bases and has no stem. In the
other type, the arm consists of 13-21 bases and is distinguishable into stem and loop both.
ANTICODON ARM
It is distinguishable into a stem of 5 bp and a loop of 7 bases (unpaired nucleotides) of
which the middle three form the anticodon. It is binding site of mRNA.
DHU ARM
It is also distinguishable into a stem and a loop. The loop contains an unusual base
dihydrouridine due to which it is called dihydrouridine (DHU) loop or the D loop. It is
binding site of aminoacyl tRNA synthetase enzyme.
TRANSLATION
* Translation is the RNA directed synthesis of polypeptides. This process requires all three
classes of RNA.
* The mRNA provides the template, tRNA brings aminoacids and reads the genetic code, and
rRNAs play structural and catalytic role during translation.
* The process of translation can be divided into three basic steps:
Initiation
Elongation
Termination
* The translation of mRNA begins with the formation of initiation complex. For this, small subunit of
ribosome, a mRNA, a specifically charged initiator tRNA, GTP, Mg2+ and proteinaceous
initiation factors are assembled.
* These initiation factors are designated as IFs in prokaryotes and eIFs in eukaryotes.
* The initiation factors bind to the smaller ribosome subunit and then this complex binds to
a sequence of mRNA, preceding the initiator AUG codon.
* Later, when the large 50S subunit joins the initiation complex, the initiation factors are
released and complete 70S ribosome is formed.
ACTIVATION OR CHARGING OF AMINO ACIDS / AMINOACYLATION OF TRNA
Amino acids are present in cytoplasm in dormant stage so they needs activation.
Activation of amino acids requires energy in the form of ATP and occurs in a two step reaction
catalyzed by the aminoacyl-tRNA synthetases. There are at least 20 different aminoacyl
tRNA synthetases.
First the enzyme attaches the amino acid to the -phosphate of ATP with the concomitant release
of pyrophosphate. This is termed an aminoacyl-adenylate intermediate.
In the second step the enzyme catalyzes transfer of the amino acid to either the 2'– or 3'–OH of
the ribose portion of the 3'-terminal adenosine residue of the tRNA generating the activated
aminoacyl-tRNA.
Step 1
Amino acid* + ATP
Aminoacyl tRNA Synthetase*
AA.AMP enzy
Step 2
AA.AMP enzyme complex + tRNA*
Charged tRNA
INITIATION
Initiation of translation requires a specific initiator tRNA, tRNAmet, that is used to
incorporate the initial methionine residue into all proteins.
In E. coli a specific version of tRNA is required to initiate translation, [tRNAfmet]. The
methionine attached to this initiator tRNA is formylated.
Although tRNA met is specific for initiation in eukaryotes it is not a formylated tRNAmet.
The initiation of translation requires recognition of an AUG codon.
In the polycistronic prokaryotic RNAs this AUG codon is located adjacent to a Shine-
Dalgarno element in the mRNA.
E P A SITES IN RIBOSOMES
The ribosome has binding sites for two charged tRNAs labelled as P (peptidyl site), and
A (aminoacyl site). There are two sites in the large subunit, for subsequent amino acids
to bind to and thus, be close enough to each other for the formation of a peptide bond.
tRNA interact with mRNA in SSU of P and A sites whilst protein synthesis occurs in P and
A sites of LSU (Large Sub Unit).
If two such charged tRNAs are brought close enough, the formation of peptide bond
between them would be favoured energetically. The presence of a catalyst would enhance
the rate of peptide bond formation.
From exit (E) site of ribosome unloaded/deacylated tRNA is expelled.
ELONGATION
The process of elongation, like that of initiation requires specific non-ribosomal proteins called
elongation factor (EF).
In E. coli these are EFs and in eukaryotes they are eEFs. In prokaryotes, elongation
factors are called EF-Tu, EF-Ts and EF-G.
Each incoming aminoacyl-tRNA is brought to the ribosome by an EF—GTP complex.
When the correct tRNA is deposited into the A site the GTP is hydrolysed and the EF—GDP
complex dissociates.
The peptide attached to the tRNA in the P site is transferred to the amino group at the
aminoacyl-tRNA in the A site. This reaction is catalyzed by peptidyltransferase. 23SrRNA
and 28SrRNA perform this function therefore they act as ribozyme
The elongated peptide now resides on a tRNA in the A site. The A site needs to be free
in order to accept the next aminoacyl-tRNA. The process of moving the peptidyl-tRNA from
the A site to the P site is termed, translocation.
In the process of translocation the ribosome is moved along the mRNA such that the next codon
of the mRNA resides under the A site. The result of the shift is that the uncharged tRNA that
was in the P site is ejected, and the tRNA that was in the A site is now in the P site. The
A site is free to accept the tRNA molecule with the appropriate anticodon for the next codon
in the mRNA.