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Ebook Ebook PDF Plant Development and Evolution PDF
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Evolution
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Preface
Plants are the basis of life on earth as we know it and have not only shaped, to
a large extent, diverse ecosystems but also provide food, feed, fibers, and fuel
for human subsistence. Understanding how plants evolved and develop to
fulfill their manifold functions is thus of great fundamental and applied
interest.
It will soon be 10 years since the last volume of Current Topics in
Developmental Biology focused on plant development. Since then, biology
has seen a revolution in methods for the investigation of genes, transcripts,
and proteins, allowing a wide variety of “omics” approaches. Also, the tools
to investigate gene function using forward-genetic, reverse-genetic, and
alternative methods, such as artificial microRNAs and RNA interference,
have provided deep insights into the molecular processes that regulate plant
development. The arsenal of the plant biologist has recently been extended
by the CRISPR/Cas9 system, which allows functional studies also in non-
model systems, providing new insights into developmental diversity and
plasticity. Clearly, focusing efforts on a model system, in this case Arabidopsis
thaliana, has greatly accelerated progress in understanding plant function. On
the other hand, a tunnel vision focusing on a single species is bound to miss
important aspects of development that are not found in this model system.
Certainly, plant biology has profited a lot from the powerful genetics of Zea
mays (maize), which started well over a hundred years ago, and the recent
focus on Oryza sativa (rice) as one of the most important crop plants. Over
the last years, the range of plant species used in fundamental research has
greatly expanded, providing insights into diverse developmental processes.
Unraveling the molecular control of plant development has also
provided the material to look at the evolution of gene regulatory networks,
investigating how preexisting mechanisms were co-opted for new develop-
mental programs or how novelties arose during land plant evolution. Such
evo-devo studies have provided great insights into the evolution of the
enormous diversity of plants that exists today. It is more than timely then
to provide a broad overview of plant development and evolution, as it is only
possible in a multichapter book bringing together experts in diverse field to
share their views on specific plant developmental processes and their evolu-
tion. The chapters provide a wide diversity of perspectives on both vegeta-
tive and reproductive development, summarizing the deep functional and
xvii
xviii Preface
Contents
1. The significance of land plants 2
2. Understanding evolution of the plant body plan 2
3. Phylogenetic relationships of land plants and evolution of the land plant
body plan 3
4. Developmental patterns predating the origin of land plants 5
5. Developmental innovations of land plants 7
5.1 Alternation of haploid (gametophyte) and diploid (sporophyte)
generations 7
5.2 Evolution of three-dimensional growth in the haploid and diploid phases 10
5.3 Origin of spores, sporangia, and sporopollenin in land plants 12
5.4 Origin of unbranched sporophyte forms 12
5.5 Evolution of bifurcating axes 14
5.6 Evolution of indeterminacy 15
5.7 Evolution of meristems 16
5.8 Origin of leaves 17
5.9 Evolution of rooting systems 20
5.10 Roots 22
6. Conclusions and perspectives 24
Acknowledgments 25
References 25
Abstract
Land plants evolved about 470 million years ago or even earlier, in a biological crust-
dominated terrestrial flora. The origin of land plants was probably one of the most sig-
nificant events in Earth’s history, which ultimately contributed to the greening of the
terrestrial environment and opened up the way for the diversification of both plant
and non-plant lineages. Fossil and phylogenetic evidence suggest that land plants have
evolved from fresh-water charophycean algae, which were physiologically, genetically,
and developmentally potentiated to make the transition to land. Since all land plants
have biphasic life cycles, in contrast to the haplontic life cycle of Charophytes, the
evolution of land plants was linked to the origin of a multicellular sporophytic phase.
Land plants have evolved complex body plans in a way that overall complexity
increased toward the tip of the land plant tree of life. Early forms were unbranched, with
terminal sporangia and simple rhizoid rooting structures but without vasculature and
leaves. Later on, branched forms with lateral sporangia appeared and paved the route
for the evolution for indeterminacy. Finally, leaves and roots evolved to enable efficient
nutrient transport to support a large plant body. The fossil record also suggests that
almost all plant organs, such as leaves and roots, evolved multiple times independently
over the course of land plant evolution. In this review, we summarize the current knowl-
edge on the evolution of the land plant body plan by combining evidence of the fossil
record, phylogenetics, and developmental biology.
Fig. 1 Hypothetical phylogenetic relationship of extant and fossil land plants and Char-
ophytes. The left bar shows the timescale of evolution. Names of extant groups are in
black while extinct taxa/lineages are shown in gray. Dashed horizontal lines represent
ambiguous phylogenetic relationships. Dotted vertical lines indicate the uncertainty in
the timing of the origin of embryophytes and lineages of bryophytes. Current data using
phylogenetic dating suggests that the deep splits in the tree may be considerably older
than depicted here (Morris et al., 2018). Pictograms show the architectural features of
major plant groups. Open elliptic structures refer to sporangia while gray filled structures
depict leaves. Redrawn, extended and modified from Kenrick, P., & Crane, P. (1997). The origin
and early diversification of land plants: A Cladistic Study. Science, 389(4), 33–39.
further embedded into the large clade of the green lineage (green plants
including green algae), the Viridiplantae. Three lineages of the paraphyletic
grade of streptophyte algae, the Charophyceae, Coleochaetophyceae, and
the Zygnematophyceae, are the closest relatives of land plants and share
the presence of phragmoplast with land plants, a structure central to the for-
mation of a new cell wall after cell division. Of the streptophyte algal line-
ages, the Zygnematophyceae appear to be the closest relative of land plants
(Delwiche & Cooper, 2015; Timme, Bachvaroff, & Delwiche, 2012;
Wickett et al., 2014; Wodniok et al., 2011). Extant Zygnematophyceae
consist of unicellular and filamentous algae, occupying freshwater and ter-
restrial habitats, whose developmental features are very difficult to compare
with the complexity of land plant body plans (Delwiche & Cooper, 2015).
Evolution of the plant body plan 5
de Vries, Curtis, Gould, & Archibald, 2018; Harholt, Moestrup, & Ulvskov,
2016; Selosse, Strullu-Derrien, Martin, Kamoun, & Kenrick, 2015). Similarly,
it was found that most transcription factor families, key regulators of
developmental processes thought to be specific to land plants, were already
present in the charophycean algae (Catarino, Hetherington, Emms,
Kelly, & Dolan, 2016; Wilhelmsson, M€ uhlich, Ullrich, & Rensing, 2017).
This suggests that some developmental innovations relevant to land plant evo-
lution may have been already present in the charophycean algae.
Charophycean algae are highly diverse in their development. For
instance, some are unicellular, but others have attained multicellularity with
thallose or filamentous forms (Delwiche & Cooper, 2015; Domozych,
Popper, & Sørensen, 2016). They may or may not show apical growth,
with some groups exhibiting complex apical growth and branching. There-
fore, developmental patterns such as apical growth, branching, and
multicellularity were present already in the charophycean algae. It is assumed
that some of these developmental patterns, and likely the corresponding
mechanisms, were retained through the evolution of early land plants. For
instance, the thallose gametophytes of liverworts resemble those of the char-
ophytes, and the underlying developmental mechanisms may have been pre-
sent and retained from their common ancestor (Ligrone, Duckett, &
Renzaglia, 2012a; Renzaglia, Duff, Nickrent, & Garbary, 2000). Similarly,
the presence of both unicellular and multicellular forms in charophytes sug-
gests that developmental processes for multicellularity might have been pre-
sent in the common ancestor of charophytes and land plants and retained.
Intriguingly, some experiments suggest that the multicellular-unicellular
transition can be achieved in moss protonema by targeting genes involved
in protein prenylation. Such mutants have unicellular cells undergoing unpo-
larized divisions and resemble those of unicellular algal cells (Antimisiaris &
Running, 2014; Thole, Perroud, Quatrano, & Running, 2014). Further-
more, recent experiments with the alga Chlamydomonas reinhardtii suggest that
multicellularity can be relatively easily attained under certain selection regimes
or by altering the regulation of cell cycle genes (Boyd, Rosenzweig, & Herron,
2018; Hanschen et al., 2016; Herron, 2016; Niklas, 2014; Olson & Nedelcu,
2016; Ratcliff et al., 2013). The observation that the basic genetic tool kit of
land plants is present in the genome of the charophyte Klebsormidium flaccidum,
and that most key transcription factor families are present in various char-
ophycean algae, further suggest that a set of developmental mechanisms and
their genetic regulators were already present in the common ancestor of
charophytes and land plants (Hori et al., 2014; Wilhelmsson et al., 2017).
Evolution of the plant body plan 7
Altogether, this implies that the common ancestor of land plants and char-
ophytes was genetically and likely developmentally prepared to achieve the
complex body plan of land plants through relatively few evolutionary steps.
Nevertheless, except some studies on MADS box genes (Tanabe et al.,
2005), information on the genetic regulation of specific developmental pro-
cesses of charophytes is lacking, and future research will provide information
about the potential homology of basic developmental mechanisms in land
plants and charophytes.
and CURLY LEAF (PpCLF), suppress the sporophytic program in the game-
tophytic phase (Mosquna et al., 2009; Okano et al., 2009; Pereman et al.,
2016). Furthermore, transcriptomic data suggest early activation of meiosis-
related genes in the apical cells of the sporophyte in the moss P. patens
(Frank & Scanlon, 2015a, 2015b). Nevertheless, the link between the gene
networks regulating the haploid-diploid switch and that of sporangial
development is unknown. These findings suggest that an ancient regulatory
network, whose evolution coincided with the origin of mating types in green
algae, is deeply conserved across the green lineage. The putative ancestral
function of this network was to enable a stringent control on the developmen-
tal switch between haploid and diploid programs (Bowman et al., 2016).
This network was then used, and its regulatory role was extended, to govern
various aspects of sporophytic development in land plants.
Although the core regulatory network controlling initiation of the sporo-
phyte and gametophyte developmental programs is known, there is very little
information available about the genetic program enabling multicellularity and
three-dimensional growth in the sporophytic phase. It is possible that these
developmental mechanisms were partly recruited from the gametophytic
phase (Frank & Scanlon, 2015a, 2015b; Szovenyi, Rensing, Lang, Wray, &
Shaw, 2010). Alternatively, they could have evolved de novo in land plants.
It is known that zygotes of double mutants disrupting the FLORICAULA/
LEAFY (FLO/LFY) homologs PpLFY1 and PpLFY2 arrest and are unable
to divide mitotically (Tanahashi, Sumikawa, Kato, & Hasebe, 2005). Further-
more, P. patens zygotes lacking activity of the two WUSCHEL-RELATED
HOMEOBOX 13-LIKE (PpWOX13LA/B) genes are unable to elongate and
initiate the apical cell of the embryo (Sakakibara et al., 2014). Transcriptomic
evidence from P. patens suggests that multicellularity and three-dimensional
patterning may have been, at least partially, recruited from gametophytic pro-
grams (Frank et al., 2015; Frank & Scanlon, 2015b; Whitewoods et al., 2018).
Nevertheless, many aspects of the evolution of the sporophytic phase are still
unclear, and the interconnection of reproductive and proliferative programs is
unknown.
Although, multiple lines of evidence support the origin of land plants
from a charophycean ancestor, there is much ambiguity surrounding the
evolutionary relationship of land plant lineages. The debate about the phy-
logenetic relationship of bryophyte lineages and their relationship with
vascular plants has significant impact on how land plant body plan changes
are interpreted. This includes the evolution of the biphasic life cycle and the
evolution of other morphological traits, such as stomata, vascular tissues, etc.
10 Peter Sz€
ovenyi et al.
Gerrienne et al., 2006; Remy et al., 1993; Taylor et al., 2005). It is assumed
that these unbranched forms are retained in extant bryophytes, especially in
the lineages of mosses and hornworts, which can be used to gain information
about their developmental biology and evolution. Unfortunately, develop-
ment of the sporophyte in the three lineages of bryophytes is strikingly dif-
ferent and, therefore, it is difficult to establish which features are ancestral to
the group (Ligrone et al., 2012a; Ligrone, Duckett, & Renzaglia, 2012b)
(Fig. 2).
Importantly, elongation of the liverwort sporophyte is almost exclusively
due to cell expansion, and there is no apical or localized meristem activity with
divisions occurring all over the sporophyte (Ligrone et al., 2012a; Renzaglia
et al., 2000). In contrast, sporophyte growth is dominated by cell divisions in
both hornworts and mosses, involving the activity of well-localized intercalary
meristems and/or apical cells (Ligrone et al., 2012a; Villarreal & Renzaglia,
2015). Hornwort and moss sporophytes share the presence of a so-called mul-
ticellular proliferative zone within the sporophyte (Ligrone et al., 2012b).
This proliferative zone produces cells upward, giving rise to the full body
of the sporophyte in hornworts, whereas it produces cells downward in
mosses, giving rise to the stalk (seta) of the sporophyte (French & Paolillo,
1975b; Villarreal & Renzaglia, 2015). Developmental homology of these
structures and their relation to the probably ancient uniaxial structures is
unexplored. Nevertheless, historical experiments of moss sporophytes suggest
that cytokinin may be involved in regulating activity of the intercalary meri-
stem. Retarded growth of the sporophyte after decapitation can be alleviated by
exogenous cytokinin application, which may represent a conserved mechanism
with the angiosperms shoot apical meristem (SAM) (French & Paolillo, 1975a,
1975b; Ligrone et al., 2012b; Snipes et al., 2018; Truskina & Vernoux, 2018).
It is not yet clear, how developmental mechanisms of unbranched forms
are linked to the origin of branched shoots of early vascular plants. There are
two competing hypotheses explaining the evolutionary origin of early vascular
shoot systems, the interpolation/sterilization and apical growth hypotheses
(Bowman, 2013; Ligrone et al., 2012b; Tomescu et al., 2014). The apical
growth hypothesis assumes that early shoots evolved from the extended mer-
istematic activity of the transient apical cell of a moss-type embryo. In contrast,
the interpolation/sterilization hypothesis suggests that the common ancestor
of bryophyte and vascular plant sporophytes had apical reproductive activity,
which went through a sterilization process to produce the axis of the shoot.
Further comparative study on the unbranched sporophytes of bryophytes and
that of vascular plants may clarify whether any of these hypotheses can be
supported by experimental data.
Language: English
WILLIAM HAZLITT
EDITED BY A. R. WALLER
AND ARNOLD GLOVER
❦
1906
LONDON: J. M. DENT & CO.
29 AND 30 BEDFORD STREET, W.C.
TO THE MEMORY OF
A. G.
E. H. G.
A. R. W.
PREFACE
A. R. Waller.