Professional Documents
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Chemical Management Plan
Chemical Management Plan
Chemical Management Plan
Table of Contents
All staff, teachers, students, and contractors who purchase, use, store, or dispose of chemicals
or controlled substances on behalf of the University of the Philippines Baguio are required to
undertake their responsibilities in line with the university’s rules and guidelines.
Role Responsibility
Chancellor Responsible for all the activities conducted in the university
Pollution Control Implements and maintains measures consistent with the university’s
Managing Head chemical management plan, ensuring compliance with legislative
requirements
Pollution Control Officer Implements and maintains measures consistent with the university’s
chemical management plan, ensuring compliance with legislative
requirements; responsible for application of necessary permits from the
Environmental Management Bureau
Disaster Risk Reduction Ensure emergency planning is undertaken
Management Committee
(DRRMC)
Occupational Safety and Provide advice, issue safety bulletins, and support to areas in relation
Health (OSH) Committee to safety and health
Laboratory Technicians Maintain inventory of chemicals and regularly inspect storage area;
report all incidents
Faculty Members Ensure class compliance with the university’s health and safety
requirements, and chemical guidelines; report all incidents; provide
advice and guidance on appropriate management of chemical and
biological materials
Research Staff To maintain inventory of chemicals and comply with the university’s
health and safety requirements, and chemical guidelines; report all
incidents; provide advice and guidance on appropriate management of
biological materials and chemicals
Individual workers/ To comply with the university’s health and safety requirements, and
students chemical guidelines; report all incidents
UP Baguio
Chancellor
Pollution
Control
(blank)
Managing
Head
Pollution OSH
DRRMC
Control Officer Committee
Use in Research
Scheduling of
Procurement of Laboratory/
Storage Withdrawal from Disposal
Chemical Classroom
Storage
Experiments
SECTION 3. TRANSPORT
3.1 Transport of Chemicals from the Receiving Area to Storage Area/ Stockroom
3.1.1 Upon arrival of the chemicals in the university, the chemicals should have
proper labelling (in accordance with GHS) and should be accompanied with
proper documents, Safety Data Sheet (SDS), and other appropriate permits.
3.1.2 The use of trolleys or carts is the recommended method of transport for
chemicals from the receiving area to the storage area.
3.2 Transport of Chemicals from the Storage Area to the Research Laboratory / Laboratory
Classroom
3.2.1 The use of a chemical cart is the recommended method of transport for
chemicals.
3.3 Any worker with probable exposure to the chemical should use personal protective
equipment (PPE) such as apron/lab gown, industrial gloves, safety shoes, and
appropriate clothing such as sleeved shirts and long pants.
SECTION 4. STORAGE
4.1 Stockroom
4.1.1 Safety Data Sheets and chemical inventory are available and accessible at
the stockroom.
4.1.3 Incompatible chemicals are not stored together. Chemicals are segregated
based on hazards category and compatibility of their physical and chemical
characteristics.
4.1.5 Stockroom is kept locked when not in use. Only authorized persons have
access to the stockroom. No student or unauthorized faculty will be allowed
in the storage area unsupervised.
4.1.6 Chemical spill kits, PPE, eyewash, and fire safety kits are readily available.
Procedures shall be established to deal with clean up and safe disposal of
spillages.
4.2.1 Chemical storage cabinets are the recommended method of storage for
chemicals in the laboratory. Chemicals and shelves are properly labelled.
Cabinets must be always locked when not in use.
4.2.2 Incompatible chemicals are not stored together. Chemicals are segregated
based on hazards category and compatibility of their physical and chemical
characteristics.
4.2.3 Chemical spill kits, PPE, eyewash, and fire safety kits are readily available.
Procedures shall be established to deal with clean up and safe disposal of
spillages.
SECTION 5. HANDLING
5.1.1 A laboratory manual will be provided to each student. The laboratory manual
contains the procedures and work instructions for all experiments. Research
methodology and protocols will be provided to all research staff.
5.2.1 Wear the prescribed PPE. No student is allowed to enter the laboratory and
carry out experiments without donning the complete prescribed Personnel
Protective Equipment
5.2.1.3 The prescribed laboratory gowns must be worn at all times when
experiments are being performed.
5.2.2 Keep food, drinks, and gum out of the laboratory. Most chemicals in the
laboratory are poisonous. Eating, drinking, and chewing gum in the
laboratory are strictly prohibited.
5.2.4 Do not work alone in the laboratory. Perform experiments only during the
scheduled laboratory period and only under the supervision of your
laboratory instructor.
5.2.7 Keep all mobile phones and other gadgets in your bag.
5.2.10 Read the labels. Carefully read the labels of chemical reagent containers,
check the chemical formula for correctness and check for appropriate
concentrations.
5.2.11 Handle all chemicals with extreme caution. Know the hazards associated
with the chemicals as well as their physical and chemical properties.
Examine the Safety Data Sheet (SDS) to know where to find specific
information on the hazards, toxicology, immediate first aid, and correct
disposal of the substance.
5.2.12 Keep knowledge of the exits, safety showers, eyewash, fire blankets and
extinguishers.
5.5 Standards for the area where the chemicals will be used
5.5.1 Packages and reagent bottles should not be opened in the actual storage
cabinet, shelf, or immediate storage area. This is to avoid the risks resulting
from handling obstructions and close proximity to other packages which may
lead to accidental escape of chemicals, vapors, or dust during transfers and
possible reaction with other substances.
5.5.2 The laboratory or working area must have proper ventilation. When handling
hazardous chemicals where toxic vapors or dust are generated, such as
these cyanide compounds, the use of a fume hood is a must.
5.5.3 Safe practices must be always utilized. Ensure that safety showers are close
to workstation location.
5.6.1 Make sure all the working areas are clean after the experiments, stoppers of
reagent bottles are replaced, and electronic materials are unplugged.
SECTION 6. DISPOSAL
6.1 The university is a registered Hazardous Waste Generator. All hazardous wastes must
be correctly handled, stored, and labelled. These wastes are collected and stored in
the university’s accumulation area until the wastes are picked up by a DENR-
accredited transporter to be delivered to a DENR-accredited TSD facility for treatment
and disposal. Disposal must be done at least once a year.
6.1.2 4.0-L or 1-gallon bottles and 20.0-L carboy containers are allowed as liquid
waste containers and should only be filled up to 2/3 capacity.
6.2.2 Chemicals with unknown expiration date will be disposed of after 5 years
unless appropriate justification can be made to keep it.
6.3.3 Used spill kit items must be disposed of in designated bins which are
properly labelled.
7.1 Phaseout plan to be done within five (5) years to allow time for Research and
Development to develop the technology to properly adapt the new chemical to the
process
7.2 Consultation with faculty members on the phaseout plan and possible substitution of
these cyanide compounds.
7.3 Discussion with other Constituent Units on their current practices and phaseout plan
for cyanide compounds.
8.1.1 When handling wastes, the following protective personal equipment (PPE)
should always be worn: laboratory gloves, goggles, mask and protective
clothing, whenever necessary.
8.1.2 Research project leaders and laboratory instructors should plan and prepare
for spill response as follows:
8.1.2.2 Make sure lab personnel read and understand the chemical spill
response procedures.
8.1.3 Research project/study leaders should make sure everyone working in the
laboratory knows:
8.1.4 Small chemical spills are spills that can be cleaned up by lab personnel
without putting themselves or others in danger and should be handled as
follows:
8.1.4.1 Alert people in the area. Avoid breathing vapors and try to
determine what is spilled.
8.1.4.5 Place the saturated absorbent in a plastic bag. Label the bag
with an HW tag and include it in the next HW collection.
8.1.5 Moderate or large-scale spills are those that present an immediate hazard
(fire, explosion, chemical exposure, etc.) and should only be handled by
emergency responders. In case this kind of spill occurs, alert people in the
area and evacuate, closing all doors. Have someone available who is
knowledgeable about the spilled material to provide information to the
responders.
8.2.2 Fire – If your clothing catches on fire, drop and roll to put out the flames.
Immediately notify the supervisor of the incident.
8.2.3 Burns – Cool the burn using cold running water, seek medical attention and
notify the supervisor of the incident immediately. If the burn is due to an acid,
apply burn ointment that should be available from the laboratory’s first aid
kit.
8.2.4 Chemical spill on clothing – Get to the safety shower immediately and remain
there for at least 15 minutes. Remove contaminated clothing while in the
shower. Notify the immediate supervisor of the incident.
8.2.5 Chemical splashes to the eye – Immediately go to the eye wash station and
flush eyes with water for at least 15 minutes. Hold eyelids open to allow
water to reach all surfaces of the eyes and eyelids. Seek medical attention
and notify the supervisor of the incident immediately.
8.3.2 Building premises shall have adequate fire, emergency or danger signs and
safety instructions.
8.3.3 Installation of proper firefighting equipment in accordance with the SDS and
compatible with the chemicals in storage.
SECTION 9. RECORDS
9.1.1 Laboratory technicians and research staff must keep an inventory of the
chemicals stored in each storage location. Updating of the chemical
inventory must be done at least twice yearly to ensure all chemicals are
entered and all information is correct.
9.2.1 All incidents and spills involving hazardous substances must be reported to
the Pollution Control Officer.
9.3.1. The PCO will keep records of all transport and treatment of hazardous
wastes
9.4.1 The Occupational Safety and Health (OSH) Committee maintains records of
all reported accidents and illness.
9.4.2 The Health Services Office (HSO) conducts annual physical examination for
all faculty and staff.
9.5.1 Safety inspection reports and safety drills documentation are to be kept by
the DRRMC.
9.6 Trainings/Seminars
9.5.1 The PCO will keep records of all trainings and seminars on chemical
management and emergency response
9.5.2 The Human Resources Development Office (HRDO) keeps records of the
trainings and safety orientations of all faculty and staff.
Sodium cyanide
CAS Number 143-33-9
Jöns Jacob Berzelius discovered proteins in 1838. They are one of the classes of biological
macromolecules, alongside polysaccharides and nucleic acids that make up the primary constituents
of living things.
Proteins are high molecular weight organic compounds with very complex structures containing
may different kinds of simple substances called amino acids joined by peptide bonds. In addition, the
side chains of various amino acids in the polypeptide may interact, intrachain or interchain, resulting
to many different physical and chemical properties of proteins. Their functions range from the
enzymes that carry out the numerous metabolic processes of the cell to structural components that
provides cells their structures and organization.
Protein extraction involves a series of processes intended to isolate a single type of protein
from a complex mixture. Protein purification is vital for the characterization of the function, structure
and interactions of the protein of interest. The starting material is usually a biological tissue or a
microbial culture. The main goal in protein extraction is to abstract the biomolecule efficiently, causing
little degradation. Secondary but equally important goals are to preserve the proteins as much as
possible and to create an accurate representation of all proteins present in the original tissue. A variety
of protein extraction methods have been developed. Common techniques used in these methods
include grinding, homogenizing, centrifugation, salting out, dialysis, and ultrafiltration. The choice of
technique/s depends on the type of tissues and cell materials, how the sample has been treated, and
the proteins that are to be extracted. Similarly, the reagent to be used for protein extraction is also
dependent on the aforementioned factors.
One of the most useful parameters used in the study of proteins in solution is the concentration
of protein as this is necessary in subsequent quantitative determination of the activity of the protein.
The concentrations of protein in biological extracts can be estimated using spectrophotometric
methods. Bradford assay is a method based on the binding of Coomassie brilliant blue dye to proteins
under acidic conditions. The protein-dye complex causes a shift in the dye’s wavelength of maximum
absorption from 465 nm to 595 nm. By comparing the absorbance of a solution containing an unknown
amount of the protein–dye complex to the absorbance values of some standard solutions having
known concentrations, the concentration of protein in the sample can be estimated. The Bradford
assay has been found useful in determining protein concentrations in the range 1-20 μg/ml. The
Warburg-Christian method, on the other hand, is more suitable for semi-quantitative analysis of
biological samples and is generally applied in detecting protein concentrations in the range of 20-
3000 μg/ml. The method makes use of the maximum absorbance of tyrosine and tryptophan residues
at 280 nm for estimating total protein content and the strong absorption of nucleic acids at 260 nm.
To be biologically active, proteins must adopt specific folded three-dimensional tertiary
structures. Yet the genetic information for the protein specifies only the primary structure or the linear
sequence of amino acids in the polypeptide backbone. Many types of intermolecular forces are
believed to contribute in varying magnitudes to give the proteins’ stability. These forces can be long
range (ion-ion, ion dipole, or dipole-dipole) or short range (van der Waals repulsive and attractive
forces). The interactions can be local (between adjacent amino acids in the linear sequence) or
nonlocal (between sequences separated in the linear sequence but brought close together in 3D
space). Clues as to what stabilizes the tertiary structure of a native protein can be gained by subjecting
proteins to agents that unfold or denature a protein.
Denaturation is defined as the loss of natural conformation of proteins and nucleic acids. It
involves rupture and possible destruction of the secondary, tertiary, and quaternary structure of
Page 1 of 12
proteins. Denaturation of proteins does not affect the primary structure as peptide bonds are not
hydrolyzed in the process. When proteins are denatured, they assume random strand structure and
lose their biological activities. Denaturation is a cooperative process in the sense that the biopolymer
becomes increasingly more susceptible to denaturation once the process begins.
There are two approaches in defining the concept of denaturation: (1) molecular, in terms of
actual structural changes taking place on the molecule and (2) operational, in terms changes in
measurable properties.
The denaturation process can be achieved by physical methods such as increasing
temperature, changing pH, using high pressure, or carrying out ultrasonic homogenization. Chemical
methods can also be utilized such as the use of denaturants (i.e., urea, guanidine hydrochloride, beta-
mercaptoethanol, dithiothreitol), inorganic salts (i.e., lithium bromide, potassium thiocyanate, sodium
iodide), organic solvents (i.e., formamide, dimethylformamide, dichloroacetic and trichloroacetic acids
and their salts), and detergents (i.e., SDS).
Color reactions are useful tools in studying protein chemistry. Some of these are general tests
for proteins such as the Biuret and Ninhydrin tests. Other color reactions like xanthoproteic, Hopkins-
Cole, Millon’s and Cystine tests are indicative of the presence of specific functional groups.
LEARNING OUTCOMES
Upon completion of the experiment, the student should be able to:
1. perform isolation of casein from milk and albumin from egg;
2. describe the methods employed for protein extraction;
3. apply spectrophotometric methods in quantifying extracted proteins;
4. examine the effect of denaturants on a protein’s stability:
5. analyze the effects of protein denaturants by using color reaction tests; and
6. determine the amino acids present in different proteins using color reactions.
MATERIALS
Page 2 of 12
PROCEDURES
Part I. EXTRACTION OF PROTEINS
A. Sample preparation
Prepare your samples for the Warburg-Christian method and Bradford assay as follows:
1. Prepare 20.0 mL of 1% (w/v) solution of albumin in 0.9% NaCl.
2. Prepare 20.0 mL of 1% (w/v) casein solution using 0.01 M NaOH.
Page 3 of 12
NOTES:
*Reduce volumes to be prepared based on available mass of protein extract but always consult your
instructor first.
**Always store unused protein solutions in properly labeled, covered containers in the refrigerator
until Experiment 1 is completed.
Table 1.1. Ratio of the absorbance at 280 and 260 and its corresponding % nucleic acid.
A280/A260 % Nucleic Acid A280/A260 % Nucleic Acid
1.75 0.00 0.87 5.00
1.63 0.25 0.85 5.50
1.52 0.50 0.82 6.00
1.40 0.75 0.80 6.50
1.36 1.00 0.78 7.00
1.30 1.25 0.77 7.50
1.25 1.50 0.75 8.00
1.16 2.00 0.73 9.00
1.09 2.50 0.71 10.00
1.03 3.00 0.67 12.00
0.98 3.50 0.64 14.00
0.94 4.00 0.62 17.00
0.90 4.50 0.60 20.00
3. Calculate the protein concentration in the crude extracts using the following equation:
Protein concentration (mg/mL) = (1.55 A280 ‒ 0.76 A260) ⨯ dilution factor (if applicable)
C. Bradford Assay
1. Set up 12 test tubes containing different amounts of protein standard and extract, distilled
water, and Bradford reagent (Refer to Table 1.2). Tube 1 will serve as blank; tubes 2 to 6 for
the construction of a standard curve for protein quantitation; tubes 7 to 12 are duplicates of
the three different concentrations of the isolates.
Page 4 of 12
Distilled
4.80 4.60 4.40 4.20 4.00 3.80 4.50 4.50 4.30 4.30 4.10 4.10
H2O
Bradford
0.20 0.20 0.20 0.20 0.20 0.20 0.20 0.20 0.20 0.20 0.20 0.20
reagent
*standard solution to be used should be of the same protein as that of the extract
A. Sample Preparation
1. Place 10.0 mL each of 1% standard protein solutions and 1% protein extracts from Part I
(casein/albumin) into separate macro-test tubes.
2. Dilute each with 10.0 mL 0.9% NaCl.
B. Denaturation
a. Heat Denaturation
1. Place 3.00 mL each of the protein solutions from section A above in labeled micro test tubes.
Heat the tubes in boiling water bath and observe.
2. Remove the tubes from the water bath and add 5 drops of 1% CH3COOH. Observe the effect.
3. Keep the solutions for the color reactions in section C. Refrigerate the solutions if they cannot
be used in the same laboratory period.
d. Salting Out
1. Put 1.00 mL of each protein solutions from A in separate test tubes, then add 0.50 mL of
saturated (NH4)2SO4 solution and mix. Note the formation of a precipitate.
2. If there is no precipitate, add 3 -5 more drops but do not add a large excess of the salt. Observe
the separation of tiny protein aggregates, if there are any, that should float on the surface of
the mixture.
Page 5 of 12
3. Reverse the process by adding water dropwise with intermittent shaking until all evidence of
the aggregated protein has disappeared. Note the amount of water used.
a. Biuret test
1. Mix 10 drops of each protein solution with 10 drops 10% NaOH. Add 1-2 drops of 0.5% CuSO4.
Note the color change, if any.
b. Xanthoproteic test
1. To 10 drops of protein sample add 10 drops concentrated HNO3.
2. Observe whether a heavy white precipitate is formed.
3. Heat carefully and observe whether the precipitate turns yellow and finally dissolves.
4. Record the color of the precipitate and/or the solution.
5. Cool and make alkaline with 10% NaOH. Record the color change, if any.
c. Cystine test
1. To 10 drops of protein sample, add 5 drops 3.00 M NaOH and 2 drops 1% Pb(NO3)2.
2. Heat the mixture in a boiling water bath for 5 mins. and note the color of precipitate formed, if
there is any.
NOTE: Store in the refrigerator all prepared protein solutions and the denatured solutions from
subpart B-a. if the experiment is not completed in one lab session.
WASTE DISPOSAL
• Collect all solid wastes in a garbage bag and dispose in the trash bin.
• Discard mixtures from the two assays in the appropriate waste containers under the hood.
• Place all acid and alkaline wastes into their respective disposal jars.
• Discard hexane- or petroleum ether-containing wastes into the organic wastes jar.
• Cheesecloths may be washed with detergent. Reuse if necessary.
• Submit to the instructor all unused protein extracts in properly labeled and sealed vials.
• Discard mixtures from subparts B-a, B-b, B-d and C-d into acid waste jars.
• Discard mixtures from B-c into heavy metal disposal jars.
• Dispose all other waste solutions into the sink. Flush with ample amounts of running water.
REFERENCES
Biochemistry Laboratory Manual, 2002. UP Diliman.
Biochemistry Laboratory Manual. 2007. UP Diliman.
Boyer, R.F. 1993. Modern Experimental Biochemistry. Benjamin Cummings. Curr Protoc Mol Biol.
Nov. 2006.
Stenesh, J. 2004. Experimental Biochemistry. N.J.: Prentice Hall.
Page 6 of 12
PRE-LABORATORY QUESTIONS
Answer the following using the provided Prelab Sheets and submit at least one day before the first
day of the experiment.
1. Draw the schematic diagram for the extraction of either one of the proteins to be used.
2. Explain the principle behind the color change when Bradford reagent mixes with proteins.
3. Briefly explain (in one sentence) the general principle behind the action of the following
denaturants:
a. Heat
b. Mineral acids
c. Alkaloidal reagents
POST-LABORATORY QUESTIONS
Use these questions as guide in further understanding of the experiment and in your review for the
final examination.
1. State the purpose of each step in the extraction procedure of the protein assigned to your group.
(For separation procedures like filtration, decantation, and centrifugation, indicate what is being
removed)
2. Classify all the proteins used in this experiment based on function/s.
3. Compute the % purity and concentration of all the proteins extracted in the experiment. Show
sample calculations for one sample.
4. Compare and contrast the Warburg-Christian method and the Bradford assay as protein assay
techniques. Based on your results, explain which technique is more efficient.
5. Copy the table below and fill-out the information needed. Gather the data for other proteins from
other groups.
Observations
Protein Hopkins-
Biuret +/- Xanthoproteic +/- Cystine +/- +/-
Cole
standard
Albumin
extract
standard
Casein
extract
Based on the results above, make a list of the amino acid/s present in each protein extracted in
the experiment.
6. Give two important applications of protein denaturation related to medicine.
Page 7 of 12
DATA SHEET
EXPERIMENT 1
EXTRACTION AND CHARACTERIZATION OF PROTEINS
Protein: __________________
Fill out only the table for the protein assigned to your group.
Centrifugation: Residue
Supernatant
Residue
Albumin yield.
Mass, g
empty watch glass
Watch glass + albumin
albumin
Heating
+ 10% CH3COOH
Centrifugation: Residue
Supernatant
Washing with 95% EtOH
Washing with acetone
Casein yield.
Mass, g
empty filter paper
filter paper + casein
casein
Page 8 of 12
NOTES/REMARKS
Prepared by:
CHEM 40.1 Section Group
Checked by:
Date:
Page 9 of 12
DATA SHEET
EXPERIMENT 1
EXTRACTION AND CHARACTERIZATION OF PROTEINS
Warburg-Christian assay
Albumin Casein
A280
A260
A280/A260
Bradford assay
Absorbance
Test Tube Albumin Casein
1
2
3
4
5
6
7
8
9
10
11
12
NOTES/REMARKS
Page 10 of 12
EXPERIMENT 1
EXTRACTION AND CHARACTERIZATION OF PROTEINS
Protein: __________________
After heating
+ 1% CH3COOH
+ conc. HNO3
sample + 2% CH3COOH
+5% K4[Fe(CN)6] (T3)
Observations on the denaturation of protein standards and extracts via salting out.
Observations
Reagent/Action taken
Standard Extract
+ saturated (NH4)2SO4
+ distilled H2O
Page 11 of 12
Biuret test
Xanthoproteic test
Cystine test
Hopkins-Cole test
NOTES/REMARKS
Prepared by:
CHEM 40.1 Section Group
Names and signatures
Checked by:
Date:
Page 12 of 12
A catalyst is a substance that lowers the activation energy required for a chemical reaction, and
therefore increases the rate of reaction without being used up in the process. An enzyme is a very large and
complex organic molecule synthesized by the cell to act as biological catalyst to speed up reactions in the
cell that would otherwise be too slow to support life.
Catalase is a heme-containing enzyme present in the cells of plants, animals and aerobic (oxygen
requiring) bacteria. It promotes the conversion of hydrogen peroxide, a powerful and potentially harmful
oxidizing agent, to water and molecular oxygen. Hydrogen peroxide (H2O2) is a poisonous byproduct of
metabolism that can damage cells if it is not removed. The reaction is as follows:
Catalase is in a cell organelle called the peroxisome. Each catalase molecule is a tetramer of four
polypeptide chains. Each chain is composed of more than 500 amino acids. Located within this tetramer are
four porphyrin heme groups that are very much like hemoglobins, cytochromes and chlorophylls. The heme
group is responsible for catalase’s enzymatic activity. Catalase has one of the highest turnover rates for all
enzymes: one molecule of catalase can convert 6 million molecules of hydrogen peroxide to water and
oxygen each minute.
Enzyme kinetics is the study of the rate at which an enzyme acts. The rate at which an enzyme
works is influenced by several factors including the concentration of substrate, temperature, pH, salt
concentration and the presence of inhibitors or activators. Every enzyme has an optimal range for each
of these factors. Activity decreases when an enzyme is exposed to conditions that are outside the optimal
range.
The kinetic parameters KM and Vmax are commonly studied to describe the activity of enzymes. Values
of KM and Vmax are derived from the mathematical treatment of data obtained from enzyme kinetics. These
parameters appear in the Michaelis-Menten equation represented as:
where Vo = reaction rate or velocity, Vmax = maximum velocity, [S] = substrate molarity and Km =
Michaelis constant (KM) represents the substrate concentration when the reaction rate is equal to one-half
of the maximum velocity (Vmax/2). Plotting V versus [S] yields a hyperbolic curve.
In order to get a linear curve, instead of a hyperbolic curve, the Lineweaver-Burk plot is used. It is a
more convenient tool in determining KM and Vmax. It is also called the double reciprocal plot and is represented
as:
By plotting 1/V versus 1/[S], a straight line having a slope equal to KM/Vmax and a y-intercept equal to 1/ Vmax
will be obtained. By manipulating this slope and y-intercept, the values of KM and Vmax can be determined.
OBJECTIVES
Upon completion of the experiment, the student should be able to:
1. understand the general functions and activities of enzymes;
2. determine and explain the effect of several factors like substrate concentration, temperature, pH,
inhibitors and activators in the activity of enzymes;
3. explain how changes in temperature, pH, and the presence of inhibitors can affect the initial reaction
rates of enzyme-catalyzed reactions; and
4. review and apply titrimetric techniques of analysis.
MATERIALS
hot plate test tubes 30% H2O2
food processor/blender burette 0.10 M phosphate buffer pH 7
knife/cutter pipettor and pipette tips 0.005 M KCN of NaCN
Green papaya cheesecloth 6.00 N H2SO4
beakers E-flasks 0.10 M K2Cr2O7*
funnel ice
* Monitors should prepare 500 mL of this reagent for the whole class. Have your instructor check your
calculation before the preparation.
PROCEDURE
I. ENZYME KINETICS OF CATALASE
NOTE: Put all equipment, sample holder in the case of the blender and glassware to be used in the
refrigerator for 5 mins before performing parts A and B
A. Enzyme Preparation from Papaya (one set-up for the whole class)
1. Use a clean knife or cutter to peel the papaya then cut it into small pieces.
2. Weigh 150 g of cut papaya and add 150 mL of 0.10 M phosphate buffer pH 7.
3. Homogenize in blender until texture is smooth.
4. Filter the crude extract through cheesecloth.
5. Collect the filtrate and centrifuge at 5000 rpm for 10 minutes.
6. Collect supernatant and store in ice bath. Label the container as ‘’catalase extract’’.
From the reaction, take note that one mole of dichromate is stoichiometrically equivalent to 3
moles of hydrogen peroxide. The titrated mmol of H2O2 can then be calculated by multiplying
the mmol of K2Cr2O7 used to this mole ratio.
b.1. The mmol of K2Cr2O7 used is equal to its molarity multiplied to its volume used to titrate a
particular test tube.
WASTE DISPOSAL
1. Collect all solid wastes in a garbage bag and dispose in the trash bin.
2. Discard mixtures from all tubes except tube 6 into acid into acid waste jars.
3. Discard mixture from tube 6 into cyanide disposal jars.
4. Dispose all other solutions into the sink. Flush with ample amounts of running water.
REFERENCES
Biochemistry Laboratory Manual. 2007. Quezon City: UP Diliman,
Mathews, C.K., K.E. Van Holde and K.G. Ahern. 2000. Biochemistry. CA, USA: Benjamin/Cummings.
PRE-LABORATORY QUESTIONS
1. Draw the schematic diagram for the isolation of catalase from green papaya.
2. Show, using a graph (reaction rate vs. factor) the general effects affecting the activity of enzymes.
Explain briefly.
3. What are the types of enzyme inhibition? Compare and contrast.
3a. Use data in test tube 1 to show sample calculations (place in appendix)
3b. Discuss the principle behind the titration and calculation of catalase activity.
3c. Use data from test tubes 1-5 to construct a Lineweaver-Burke plot. Determine KM and Vmax.
Interpret.
3d. Use data from test tubes 2, 6, 7, and 8 to discuss the factors affecting catalase activity.
EXPERIMENT 3
ENZYMATIC CATALYSIS
DATA SHEET
Table 3.1. Data on the titration of remaining H2O2 after activity of catalase using K2Cr2O7.
Volume K2Cr2O7 used, mL
Test tube
Trial 1 Trial 2 Trial 3 Average
1
8
NOTE: Perform one trial per group. Exchange data from other groups to have trials 2 and 3. Use the average
volume for the succeeding calculations.
Prepared by:
__________________________________
__________________________________
__________________________________
__________________________________
Checked by:
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Instructor
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