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Heterocyclesnomenclature
Heterocyclesnomenclature
CH3
N
NEt2
HO HN
H
MeO
Cl N
N
QUININE CHLOROQUINE
natural product - antimalarial synthetic antimalarial
MeO H3C
N
N
MeO
N
H CH3
OMe
PAPAVERINE ELLIPTICINE
smooth muscle relaxant OMe
anti-tumour agent
and vasodilator
O
Me
H H
N N
NH
N O
MeO H
N O
H N
LYSERGIC ACID
DIETHYLAMIDE
FUMITREMORGIN C semi-synthetic compound with
reverses multidrug resistance psychadelic properties
in cells transfected with BCRP
1
SOME HETEROCYCLES IN THIS COURSE
N
N H
PYRIDINE PYRROLE
N N O
H N
H
QUINOLINE 2-QUINOLONE 4-QUINOLONE
N
N
N N
H H
O H O
N
N N NH
2
DEMYSTIFYING HETEROCYCLE NOMENCLATURE
Cl
CH3
(4aS, 8aR)-4-chloro-4a-methyl-8a-phenyl-
4a,7, 8, 8a-tetrahydroisoquinoline
N
Ph
5 4
6 4a 3
7 8a N 2
N N
8 H H
1
QUINOLINE 1,2-DIHYDROQUINOLINE 1,2,3,4-TETRAHYDRO
QUINOLINE
5 4
6 4a 3
7 N2 N
8a
8 1
ISOQUINOLINE 3,4-DIHYDROISOQUINOLINE
* Numbering starts adjacent to the bridgehead closest to the atom of highest priority.
* Prefix "hydro" indicates a (partially) reduced ring system with numbers say where the
reduced bonds(s) is (are).
* Quaternary bridgehead atoms in parent heterocycles given an "a" suffix e.g. 4a, 8a etc.
1 1 1
O O 5 O
5 5 2
N2 N2 NH
4 4 4
3 3 3
ISOXAZOLE ISOXAZOLINE ISOXAZOLIDINE
(4,5-dihydroisoxazole) (tetrahydroisoxazole)
H H 1H
N N1 5 N 2
5
N N2 NH
4 4
3 3
PYRAZOLE PYRAZOLINE PYRAZOLIDINE
(4,5-dihydropyrazole) (tetrahydropyrazole)
3
DEMYSTIFYING HETEROCYCLE NOMENCLATURE
POLYHETEROCYCLES - SOME BRIEF RULES
4 3 4
3 4 3a 5 3
5 4a 3a
2 2
2 6
5 6
N 7a N N N
H 1 7 H 7H 7a 8a H
1 8 1
PYRROLE INDOLE PYRROLOINDOLE
pyrrolo[number, number-letter]indole
* The letter defines the position of attachment of the minor ring to the major ring
* The numbers indicate which atoms in the minor ring are common to the major ring.
* The order of the numbers indicates which atom of the minor ring is encountered
closest to atom 1 in the major ring numbering system.
* The numbering system for the final polycycle is not the same as the numbers in the
square brackets.
( )n
( )n
N N
N
NH
H 1
N 4 2
b 3 1 3
2 1 b 2 c
3
N N
H N
N
4
CLASSIFICATION OF RING FORMING REACTIONS
Classification is based upon the number of bonds formed (usually I or II) and letter(s) -
the same as those which are used to define the position of attachment of a minor ring to
a major ring in polyheteocycle nomenclature.
R R
IIeg
N
H
R R
N Ia N IIac
R R R
Ib e d c
b
R f R R
a
N g h i N
H N IIab
INDOLE
R
Ic
R
Id
R N
H
Ih
N
R
N
H
Some cyclization reaction types which have been used to make indoles
5
CYCLIZATION REACTIONS
Cyclizations are stepwise reaction going through one or more intermediates, involving the
expulsion of a small molecule such as an alcohol or water.
O O O
δ+ δ+ δ+
R H R R OEt
R
or nucleophilic centers......
δ-
XH
δ-
δ-
δ- R NH2
XH XH
δ- δ-
O
or both X = O, S, NR
δ+ O
R H2N δ+
δ- δ- OEt
XH R
Matching the polarity of electrophilic and nucleophilic centres often gives a good clue as to
the way in which molecules can be 'knitted together'. Analogies can then be made between
say nitrogen and oxygen heterocycles.
O δ+
C
δ- C
δ+ C δ-
δ- C δ+
δ- C δ+ NH2
NH2
C
C
C
N
H
6
SOME KEY REACTIONS: a refresher
Reations already encountered in Year 1 and 2 are fundamental to classical heterocyclic
chemistry, where precursors and final products are built up in a stepwise fashion via
identifiable (and often isolable) intermediates. Other examples will include Claisen and aldol
reactions etc. Detailed mechanisms for these can be found in earlier notes or standard texts.
AMIDE formation
O O O
-R2OH
+ H2N R3 R3 + H2N R3
R1 Cl R1 N R1 OR2
H
O -H2O H H
tautomerization
+ H2N R3 R3
R3 R1CH N
R1CH2 H R1CH2 N H
N N N
H H H
NH2 N N
H2 H
7
WHAT WILL I NEED TO KNOW?
KEY LEARNING OUTCOMES
2. Be able to identify, draw and be familiar with the names of the classes of bicyclic and
polyheterocyclic molecules covered in the course (not detailed nomenclature)
QUINOLINES
QUINOLONES
ISOQUINOLINES
INDOLES
ISOXAZOLES AND ISOXAZOLINES
PYRAZOLES AND TRIAZOLES
ISOXAZOLIDINES
An overall hope is that you will take away some concepts regarding heterocycle formation
and be able to recognize and apply these in the syntheses and reactions of other heterocycles
not specifically covered in this course.
8
CLASSICAL METHODS OF SYNTHESIZING QUINOLINES
The most obvious starting material for making a quinoline is aniline (aminobenzene) as this
and substituted variants can be readily obtained (e.g. via the sequence of nitration and NO2
reduction).
This reaction will not specifically covered. The mechanism is basically like the first
half of the Friedlaender method (imine formation) and second half of the Skraup
(acid-catalyzed condensation of the second ketone with the aromatic ring).
9
Skraup Synthesis of Quinolines
Overall transformation
PhNO2 5 4
OH 6 4a
HO c. H2SO4 3
R R
7
NH2 HO 130 oC 8a N 2
8
1
H
H
OH H H
HO O tautomerize
glycerol acrolein
O
HO -H2O HO -H2O
H
Glycerol is dehydrated in situ to give acrolein.
Mechanism H
O
H
OH O
H -H
H H
NH2 tautomerize
N N
H2 H
OH OH OH
H
re-aromatize
H
N -H N
H H N
H
+H -H2O
oxidation*
N N
H
10
Doebner-von Miller Variation of the Skraup Reaction
Overall transformation R3
R3
R2 R2
O
NH2 N R1
R1
R3
R2 O
O
1,4-addition R2
R3
R1
NH2
N R1
H
R1
R2 1,2-addition R1
R2
NH2
O R3 X
N R3
H
crotonaldehyde
O O
CH3 H
NH2 N CH3
N CH3
H 2-methylquinoline
(quinaldine)
CH3 methyl vinyl ketone
O CH3
O
CH3
NH2 N
H N
4-methylquinoline
(lepidine)
11
Skraup / Doebner-von Miller Syntheses:
using substituted anilines
para-substituted aniline
O
O
R R R
NH2 N N
H
6-substituted isomer
both positions ortho to the R R
amine are equivalent R
NH N
N
O
ortho-substituted aniline
O 8-substituted isomer
O
H
NH2 N
N
R H R
R
R NH2 if R is +M R N
R N
H +
can cyclize to either ortho
positions but this gives rise 5-substituted isomer
to two possible isomers R
favoured
R NH R N
if R is -M
O N
Rate of Reaction: as the ring acts as a nuclophile to attack the protonated aldehyde (see
previous slide), an electron withdrawing group R group slows the rate of cyclization whereas
an electron donating group increases the rate of cyclization.
12
Conrad-Limpach Synthesis of Quinolones
Overall transformation
O CH3
O O
H3C OEt
between RT and 110oC
NH2
CH3 O cat. H -H2O
N OEt imine formation is still
150oC
faster, but reversible
imine-enamine -EtOH
if water is not removed
tautomerization
O thermodynamic OH
EtO O HO CH3
H H
N CH3 N O
H H
-H -EtOH -H -H2O
O CH3
N CH3 N O
H H
4-quinolone 2-quinolone
13
Friedlaender Synthesis of Quinolines
Overall transformation
O H R3
R2
H R2
R3
O R1
NH2 N R1
CH3
CH3 -H+ / -H2O
H CH3 base conditions and
imine formation O
O H lower T leads to
O CH3 N kinetic product
NH2 CH3
H3C
NH N
CH3 CH3
H3C H2C
HO CH3 H3C O
CH3
H
N CH3 N CH2CH3
H
-H -H2O -H2O
CH3 CH3
CH3
N CH3 N CH2CH3
Product distribution is dependent on both reaction conditions and the ketone used (see
Fischer indole synthesis for a related discussion). Even different acids (i.e acid strength)
can produce different product ratios.
14
CLASSICAL METHODS OF SYNTHESIZING ISOQUINOLINES
Arylethylamines
The most common starting material for making isoquinolines are arylethylamines.
These can be readily obtained via chemistry already encountered (see Year 2
bifunctional chemistry notes).
O NO2 NH2
Nitro aldol LiAlH4
CH3NO2
the 'Henry
reaction'
O NaNO2 O O OH
O
HCl N NOH LiAlH4 NH2
via enol
15
Bischler Napieralski Synthesis of Isoquinolines
Overall transformation
O
N
NH2 R Cl
R
R1 O R1 *POCl R1
base 3
NH2 R Cl HN R N R
O Cl
AMIDE
Pd-C
R1 R1 R1
190 oC -HCl
N N N
H
R R R Cl
isoquinoline 3,4-dihydroisoquinoline
16
Pomerantz Fritsch Synthesis of Isoquinolines
Overall transformation
EtO OEt
R
R or R
H2N NH N
O
Mechanism:
(c) OEt (d)
EtO OEt c. H2SO4
R -H2O OEt
R R
N N
(a) H2N
O
isoquinoline
(b) IMINE
H2 / Pd-C
H
OEt OEt OEt
H2O
-EtOH H
OEt HCl O
R R R
NH H2O NH NH H
H
-H+
- EtOH
OH OH
H+ H
+
-H2O -H OH
R R R R
NH NH NH NH
1,2-dihydroisoquinoline 1,2,3,4-tetrahydroisoquinoline
17
Reactions of (iso)Quinolines
benzenoid ring: pyrido ring:
More susceptible to electrophilic substitution Lone pair is readily protonated/coordinates to
but resistant to nucleophilic substitution Lewis acids so deactivating the pyrido ring.
N More resistant to electrophilic substitution but
susceptible to nucleophilic substitution.
H2SO4, HNO3
1:1
N 0 oC N N
NO2 NO2
H2SO4, HNO3
N 9:1 N
N 0 oC
Br Br
NO2
Br2, AlCl3
N 80 oC N N N
44% 25% 8%
Br Br Br
Br2, AlCl3
N 75 oC, 78% N
Substitution next to a bridgehead position is favoured. This maximises the resonance delocalization
in the intermediate without disrupting aromaticity of the second ring. This is a common idea used to
explain regioselectivity of such reactions in polycyclic aromatic systems.
Cl OR
RONa RONa or
N N N N
RNH2
-Cl Cl XR
Cl XR
Cl Cl
OR RONa or
OR
N N RNH2
N N
18
Further Reactions of (Iso)quinolines
Synthesis of chloro(iso)quinolines
(iso)Quinolones (from Conrad-Limpach) can be chlorinated with POCl3 or PCl5
Cl
P
Cl Cl Cl Cl O O
Cl Cl P P
O Cl P Cl O O Cl O O Cl
O POCl3
heat N
N N N
H
H H
POCl3 POCl3
also and N N
N O heat N Cl H heat
H O Cl
NaOEt PhCO2Et O
EtOH
N N N Claisen N Ph
H
OEt
KNH2
Et-Br
N N N N
H
NH2
DMFDMA/heat NMe2
NMe2
OMe
N N N OMe
NMe2
H
OMe +
OMe
heat
-H NMe2
NMe2
N NMe2 N
MeO OMe H
19
Fischer Indole Cyclisation
Overall transformation
4
H R1
5
3a
R1
R 3
R H 6 2
NH-NH2 2 7 7a N1 R2
O R
H
Mechanism H R1
H
O R H R1 H+ (cat) R1
H
-H2O
NH-NH2 N N R can also be N N R
H calalyzed using H H
aryl hydrazone formation Lewis acids
cf imine formation
R1 R1
R1 H
R H+ transfer R
R NH2 NH
N NH2 NH2 NH
H2
H+
re-aromatization
H+ transfer
R1 -NH3 H R1 R1
-H+
R R
N N N R
H NH3 H H
R OR2 O O O
CH2R1 R1
R2 = Na R1CH2 R
R O R
Ar N N N R
R1CH2 N
NH N
(diazonium salt N H
formed separately) Ar Ar O
20
Fischer Indole Cyclisation - examples
MeO
MeO MeO Ph Ph
Ph
O
NH-NH2 H N N N
H H H
aldehyde only one tautomer can form
( )n ( )n
O
( )n N N N
NH-NH2
H H Me H
Me Me
symmetrical cyclic ketone only one tautomer can form
Ph Ph
Ph
O Et Et
NH-NH2 Et N N N
H H H
unsymmetrical cyclic ketone one tautomer favoured due to conjugation
O O
O O
O
O
O
O NH-NH2 O N N N
O H H H
symmetrical cyclic diketone one tautomer favoured due to conjugation cyclization to para
to O preferred
Br
Br CH3 CH3
A
N N CH3 CH3
N
Br CH3 H H H
which tautomer is formed
O
depends on conditions
NH-NH2 CH3 Br
Br B
CH2
unsymmetrical ketone CH3 CH3
N N N
H H H
A:B
100 : 0 AcOH
50 : 50 polyphosphoric acid
22 : 78 P4O10 - MeSO3H
21
Leimgruber-Batcho and Reissert Indole Syntheses
Overall transformations
CH3 i, heat R
R + (MeO)2CHNMe2 Leimgruber-
NO2 ii, H2 / Pd-C Batcho
N
H
These methods both rely on the acidity of the methyl protons ortho to the electron
withdrawing nitro group. The resulting conjugate base can be stabilized by resonance.
imine -H2O
formation
-HNMe2 tautomerization
CO2Et
N N
H H
< see Aromatic Heterocyclic Chemistry, D.T. Davies, Oxford Primer No. 2, p 56
see also handout 'further reactions of (iso)quinolines' for a related reaction
22
Reactivity of indole
facile electrophilic substitution Lithiation of N-
at C3; reaction at C2 if C3 substituted
E blocked derivatives N Li
occurs at C2 R
E -H
N
H -H R1
R
H H N N N
H
H R
indoles are very indolyl anion indolyl anion N R1
N weakly basic and generated by reacts to provide
protonate at C3 deprotonation N-substituted R
H
derivatives
H H -H+
H
N E N E N E N E
H H H H
E
N
H H H E
E E -H+
N N N
H H preferred H
O O
NO2 Br
N Br2 / pyridine
Ph O O
N Me N Me N
generates +NO2 under H N
H H H
neutral conditions 35% 64%
N N N N
H generates H H H
97%
23
Electrophilic Reactions of indole
Initial protonation at C3 with strong acid can lead to some more unusual reaction.
semi stable adduct
H+ c. H2SO4 H O2N
H
c. HNO3 H H nitrates
Me Me Me like an
N N N Me
H N
H H OSO3H aniline
84% H
Me c. HCl H H
H+ DMSO Me Me -Me2S H Me
H
N N N O -H+ O
H H N
O H S H
c.f Swern oxidation
S probably via ylid
N N N N X
H H H H
not isolable isolable
R R excess
-H+ H indole :
bis indole reacts at
C3 too!
HN NH HN NH
H+ / HNMe2 H gramine
NMe2
CH2O H NMe2
H
NMe2 MeI NMe3
X
N generates N N isolable N
H H H H
"Mannich reaction"
R2 70-115 oC
R2
R1
R1 = H, R2 =NO2 R1
R1 = CO2Et, R2 =CO2Et N N The NMe3 group
R1 = CO2Et, R2 =NO2 H H can be displaced
with a wide variety
of nucleophiles via
CN CN the indolium cation
N
H
24
The Indole Pictet Spengler Reaction
Synthesis of tetrahydro-β-carbolines
overall transformation
i) RCHO, weak H+ cat.
NH2 ii) CF3CO2H NH
N N
H H R
imine formation
Dean-Stark trap
NH2 N
N - H2O N
H H R
NH
NH spiro intermediate
N
H H R formed rapidly and
-H+ R reversibly
N
H
NH
N
H R
13
C label
* *
BF3OEt *
+
N N N *
H OH N H H
H
symmetrical (ignoring migration of either CH2 leads to equal distribution
isotope) spiro intermediate of the labelled carbon atom between C1 and C4
25
Other Heterocycles
S
NH2 O N
+ H S
O2N N QUINOXALINE
O2N NH2
O
Me Me
O H2N NH2 N
PHTHALAZINE
O N
Ph
i)
Me Me
O Cl
O N QUINAZOLINE
ii) NH3
NH2 N Ph
OMe OMe
Cl
Me i) Me
O O Cl N
1,3-DIHYDRO-1,4-BENZODIAZEPIN-2-ONE
NH2 ii) NH3 N
H O
O O CO2H
Br KOH Br
O QUINOLINE
+
N H2O-EtOH
H N Ph
H piperdine
CO2Et piperdine acetate CO2Et
O + COUMARIN
CO2Et O O
OH
CH3 O
i) KOH
O
CHROMONE
ii) c. H2SO4
O O Ph
AcOH
O Ph
O
c HCl / AcOH
H Me 1-BENZOPYRILIUM ION
+
O Ph
OH O Ph
26
Other Heterocycles
NH2 S
NH2 N
O2N NH2 -H2O -H2O
O O2N N S O2N N
imine imine
H S formation O formation
QUINOXALINE
O
The amine para to the -M NO2 is less nucleophilic and so reacts less readily than the meta
amine. The aldehyde is more electrophilic than the ketone and so only one product is
formed.
Me Me Me
-H2O NH2 -H2O
O N N
H2N NH2
O O N
hydrazone hydrazone
formation formation
Ph Ph Ph
PHTHALAZINE
Me Me Me Me
Ph NH
O NH3
O O O -H2O N
O Cl
NH2 N imine N heat N Ph
Ph formation Ph
amide H H
OMe OMe OMe OMe
formation
QUINAZOLINE
Me Cl Me Me Me
O NH3 NH -Cl N
O O Cl O Cl
Cl
NH2 N imine N SN2 N
amide H O H O
formation formation H
1,3-DIHYDRO-
1,4-BENZODIAZEPIN-2-ONE
27
Other Heterocycles
CO2K CO2K
O CO2K
KOH Br Br
Br Br -H2O O O
O O
amide imine N
N N
hydrolysis NH2 formation
H
+ O Ph Ph
'aza-aldol'
reaction
CO2H
HO CO2K
Br -H2O Br
QUINOLINE
N Ph N Ph
H
CO2Et piperdine CO2Et CO2Et
O acetate
+ CO2Et
CO2Et -H2O OH O
OH O
OEt
Knoevenagel condensation
"trans-
esterification" -EtOH
CO2Et
COUMARIN
O O
O O O O O O
CH3 Ph Cl CH3 KOH CH2 Ph
OH ester
formation O O OH
O Ph O Ph cH2SO4
AcOH
O O
-H2O
CHROMONE OH
O Ph O Ph
O c HCl O
Me AcOH H+ -H2O
H + Ph OH
O Ph aldol O Ph O Ph
OH reaction OH
1-BENZOPYRILIUM ION
28