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Atomic Structure
Atomic Structure
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The nucleus
Isotopes
The number of neutrons in an atom can vary within small
limits. For example, there are three kinds of carbon atom
12
C, 13C and 14C. They all have the same number of protons, but the number
of neutrons varies.
The electrons
no of electrons = no of protons
Dots-and-crosses diagrams
Note: There are many places where you could still make use of
this model of the atom at A'level. It is, however, a simplification
and can be misleading. It gives the impression that the electrons
are circling the nucleus in orbits like planets around the sun. As
you will find when you look at the A'level view of the atom, it is
impossible to know exactly how they are actually moving.
This page explains what atomic orbitals are in a way that makes them
understandable for introductory courses such as UK A level and its
equivalents. It explores s and p orbitals in some detail, including their
shapes and energies. d orbitals are described only in terms of their
energy, and f orbitals only get a passing mention.
When a planet moves around the sun, you can plot a definite path for it
which is called an orbit. A simple view of the atom looks similar and you
may have pictured the electrons as orbiting around the nucleus. The truth
is different, and electrons in fact inhabit regions of space known as
orbitals.
Orbits and orbitals sound similar, but they have quite different meanings.
It is essential that you understand the difference between them.
To plot a path for something you need to know exactly where the object
is and be able to work out exactly where it's going to be an instant later.
You can't do this for electrons.
The Heisenberg Uncertainty Principle says - loosely - that you can't know
with certainty both where an electron is and where it's going next. (What
it actually says is that it is impossible to define with absolute precision, at
the same time, both the position and the momentum of an electron.)
Note: Over the years I have had a steady drip of questions from
students in which it is obvious that they still think of electrons as
orbiting around a nucleus - which is completely wrong! I have
added a page about why the idea of orbits is wrong to try to avoid
having to say the same thing over and over again!
Note: In this diagram (and the orbital diagrams that follow), the
nucleus is shown very much larger than it really is. This is just for
clarity.
You keep on doing this over and over again, and gradually
build up a sort of 3D map of the places that the electron is
likely to be found.
95% of the time (or any other percentage you choose), the
electron will be found within a fairly easily defined region
of space quite close to the nucleus. Such a region of space
is called an orbital. You can think of an orbital as being the
region of space in which the electron lives.
p orbitals
The p orbitals at the second energy level are called 2px, 2py
and 2pz. There are similar orbitals at subsequent levels -
3px, 3py, 3pz, 4px, 4py, 4pz and so on.
All levels except for the first level have p orbitals. At the
higher levels the lobes get more elongated, with the most
likely place to find the electron more distant from the
nucleus.
d and f orbitals
For the moment, you need to be aware that there are sets
of five d orbitals at levels from the third level upwards, but
you probably won't be expected to draw them or name
them. Apart from a passing reference, you won't come
across f orbitals at all.
"Electrons-in-boxes"
ELECTRONIC STRUCTURES
This page explores how you write electronic structures for atoms using s, p, and
d notation. It assumes that you know about simple atomic orbitals - at least as far
as the way they are named, and their relative energies. If you want to look at the
electronic structures of simple monatomic ions (such as Cl-, Ca2+ and Cr3+),
you will find a link at the bottom of the page.
Important! If you haven't already read the page on atomic orbitals
you should follow this link before you go any further.
Now the 2p levels start to fill. These levels all have the
same energy, and so the electrons go in singly at first.
B 1s22s22px1
C 1s22s22px12py1
1s22s22px12py12
N
pz1
1s22s22px22py12
O
pz1
1s22s22px22py22
F
pz1
N 1s22s22px22py22
e pz2
At neon, all the second level orbitals are full, and so after
this we have to start the third period with sodium. The
pattern of filling is now exactly the same as in the previous
period, except that everything is now happening at the 3-
level.
For example:
short version
M
1s22s22p63s2 [Ne]3s2
g
1s22s22p63s23px23py1 [Ne]3s23px23py13
S
3pz1 pz1
1s22s22p63s23px23py2 [Ne]3s23px23py23
Ar
3pz2 pz2
Note: Check that you can do these. Cover the text and then work
out these structures for yourself. Then do all the rest of this period.
When you've finished, check your answers against the
corresponding elements from the previous period. Your answers
should be the same except a level further out.
The beginning of the fourth period
At this point the 3-level orbitals aren't all full - the 3d levels
haven't been used yet. But if you refer back to the energies
of the orbitals, you will see that the next lowest energy
orbital is the 4s - so that fills next.
1s22s22p63s23p6
K
4s1
1s22s22p63s23p6
Ca
4s2
d-block elements
Remember that the 4s orbital has a lower energy than the
3d orbitals and so fills first. Once the 3d orbitals have filled
up, the next electrons go into the 4p orbitals as you would
expect.
d5 means
d8 means
S 1s22s22p63s23p63d1
c 4s2
1s22s22p63s23p63d2
Ti
4s2
1s22s22p63s23p63d3
V
4s2
1s22s22p63s23p63d5
Cr
4s1
The next orbitals to be used are the 4p, and these fill in
exactly the same way as the 2p or 3p. We are back now
with the p-block elements from gallium to krypton.
Bromine, for example, is 1s22s22p63s23p63d104s24px24py24pz1.
Summary
This page explains what first ionisation energy is, and then
looks at the way it varies around the Periodic Table -
across periods and down groups. It assumes that you know
about simple atomic orbitals, and can write electronic
structures for simple atoms. You will find a link at the
bottom of the page to a similar description of successive
ionisation energies (second, third and so on).
In period 3, the trend is exactly the same. This time, all the
electrons being removed are in the third level and are
screened by the 1s22s22p6 electrons. They all have the
same sort of environment, but there is an increasing
nuclear charge.
Why the drop between groups 2 and 3 (Be-B and Mg-Al)?
Ideally the photo would show three clean spectral lines - dark
blue, cyan and red. The red smearing which appears to the left of
the red line, and other similar smearing (much more difficult to
see) to the left of the other two lines probably comes, according
to Dr Nave, from stray reflections in the set-up, or possibly from
flaws in the diffraction grating. I have chosen to use this
photograph anyway because a) I think it is a stunning image, and
b) it is the only one I have ever come across which includes a
hydrogen discharge tube and its spectrum in the same image.
Note: You will sometimes find frequency given the much more
obvious symbol, f.
For the rest of this page I shall only look at the spectrum
plotted against frequency, because it is much easier to
relate it to what is happening in the atom. Be aware that
the spectrum looks different depending on how it is
plotted, but, other than that, ignore the wavelength version
unless it is obvious that your examiners want it. If you try
to learn both versions, you are only going to get them
muddled up!
It could fall all the way back down to the first level again,
or it could fall back to the second level - and then, in a
second jump, down to the first level.
The next few diagrams are in two parts - with the energy
levels at the top and the spectrum at the bottom.
In fact you can actually plot two graphs from the data in
the table above. The frequency difference is related to two
frequencies. For example, the figure of 0.457 is found by
taking 2.467 away from 2.924. So which of these two
values should you plot the 0.457 against?
Note: Remember that 3.28 PHz is the same as 3.28 x 1015 Hz.
You can use the Rydberg equation to calculate the series limit of
the Lyman series as a check on this figure: n1 = 1 for the Lyman
series, and n2 = infinity for the series limit. 1/(infinity)2 = zero.
That gives a value for the frequency of 3.29 x 1015 Hz - in other
words the two values agree to within 0.3%.
We can work out the energy gap between the ground state
and the point at which the electron leaves the atom by
substituting the value we've got for frequency and looking
up the value of Planck's constant from a data book.
ELECTRON AFFINITY
This page explains what electron affinity is, and then looks
at the factors that affect its size. It assumes that you know
about simple atomic orbitals, and can write electronic
structures for simple atoms.
F -328 kJ
mol-1
-349 kJ
Cl
mol-1
B -324 kJ
r mol-1
-295 kJ
I
mol-1
Is there a pattern?
That means that the net pull from the nucleus is less in
Group 6 than in Group 7, and so the electron affinities are
less.
You are only ever likely to meet this with respect to the
group 6 elements oxygen and sulphur which both form 2-
ions.
You are forcing an electron into an already negative ion. It's not going to go in
willingly!
1st EA = -142 kJ
mol-1
2nd EA = +844 kJ
mol-1
ATOMIC RADIUS
As you can see from the diagrams, the same atom could be
found to have a different radius depending on what was
around it.
The left hand diagram shows bonded atoms. The atoms are
pulled closely together and so the measured radius is less
than if they are just touching. This is what you would get if
you had metal atoms in a metallic structure, or atoms
covalently bonded to each other. The type of atomic radius
being measured here is called the metallic radius or the
covalent radius depending on the bonding.
The right hand diagram shows what happens if the atoms are
just touching. The attractive forces are much less, and the
atoms are essentially "unsquashed". This measure of atomic
radius is called the van der Waals radius after the weak
attractions present in this situation.
Note: If you want to explore these various types of bonding this link
will take you to the bonding menu.
You have to ignore the noble gas at the end of each period.
Because neon and argon don't form bonds, you can only
measure their van der Waals radius - a case where the atom
is pretty well "unsquashed". All the other atoms are being
measured where their atomic radius is being lessened by
strong attractions. You aren't comparing like with like if you
include the noble gases.
Note: You might possibly wonder why you don't get extra screening
from the 2s2 electrons in the cases of the elements from boron to
fluorine where the bonding involves the p electrons.
If you don't know about hybridisation, just ignore this comment - you
won't need it for UK A level purposes anyway.
IONIC RADIUS
A warning!
electronic
ionic radius
structure
(nm)
of ion
Li+ 2 0.076
Na+ 2, 8 0.102
K+ 2, 8, 8 0.138
electronic
ionic radius
structure
(nm)
of ion
F- 2, 8 0.133
Cl- 2, 8, 8 0.181
Note: These figures all come from the Database of Ionic Radii from
Imperial College London. I have converted them from Angstroms to nm
(nanometres), which are more often used in the data tables that you
are likely to come across.
Let's look at the radii of the simple ions formed by elements as you go across Period
3 of the Periodic Table - the elements from Na to Cl.
no of
11 12 13 15 16 17
protons
electroni
c
2,8 2,8 2,8 2,8,8 2,8,8 2,8,8
structur
e of ion
ionic
0.10 0.07 0.05 (0.212 0.18 0.18
radius
2 2 4 ) 4 1
(nm)
Note: The table misses out silicon which doesn't form a simple ion.
The phosphide ion radius is in brackets because it comes from a
different data source, and I am not sure whether it is safe to compare
it. The values for the oxide and chloride ions agree in the different
source, so it is probably OK. The values are again for 6-co-ordination,
although I can't guarantee that for the phosphide figure.
First of all, notice the big jump in ionic radius as soon as you
get into the negative ions. Is this surprising? Not at all - you
have just added a whole extra layer of electrons.
Notice that, within the series of positive ions, and the series
of negative ions, that the ionic radii fall as you go across the
period. We need to look at the positive and negative ions
separately.
This is only really a variation on what we have just been talking about, but fits
negative and positive isoelectronic ions into the same series of results. Remember
that isoelectronic ions all have exactly the same electron arrangement.
no of
7 8 9 11 12 13
protons
electroni
c
2, 8 2, 8 2, 8 2, 8 2, 8 2, 8
structur
e of ion
ionic
(0.171 0.14 0.13 0.10 0.07 0.05
radius
) 0 3 2 2 4
(nm)
You might also be curious as to how the neutral neon atom fits into
this sequence. It would seem logical that its van der Waals radius
would fall neatly between that of the fluoride ion and the sodium ion.
It doesn't! Its radius is 0.154 or 0.160 nm (depending on which source
you look the value up in) - bigger than the fluoride ion. I have no idea
why that is!
For 10 years, until I rewrote this ionic radius section in August 2010, I included what
is in the box below. You will find this same information and explanation in all sorts
of books and on any number of websites aimed at this level. At least one non-UK A
level syllabus has a statement which specifically asks for this.
Ions aren't the same size as the atoms they come from.
Compare the sizes of sodium and chloride ions with the
sizes of sodium and chlorine atoms.
Positive ions
Positive ions are smaller than the atoms they come from.
Sodium is 2,8,1; Na+ is 2,8. You've lost a whole layer of
electrons, and the remaining 10 electrons are being
pulled in by the full force of 11 protons.
Negative ions
Negative ions are bigger than the atoms they come from.
Chlorine is 2,8,7; Cl- is 2,8,8. Although the electrons are
still all in the 3-level, the extra repulsion produced by the
incoming electron causes the atom to expand. There are
still only 17 protons, but they are now having to hold 18
electrons.
The rest of this page discusses the problems that I can see, and is
really aimed at teachers and others, rather than at students.
If you are a student, look carefully at your syllabus, and past exam
questions and mark schemes, to find out whether you need to know about
this. If you don't need to know about it, stop reading now (unless, of course,
you are interested in a bit of controversy!).
If you do need to know it, then you will have to learn what is in the box, even
if, as I believe, it is wrong. If you like your chemistry to be simple, ignore the
rest of the page, because you risk getting confused about what you need to
know.
If you have expert knowledge of this topic, and can find any flaws in what I
am saying, then please contact me via the address on the about this site
page.
The diagrams in the box above, and similar ones that you will
find elsewhere, use the metallic radius as the measure of
atomic radius for metals, and the covalent radius for non-
metals. I want to focus on the non-metals, because that is
where the main problem lies.
Group 7
F 0.147 0.133
Cl 0.175 0.181
Br 0.185 0.196
I 0.198 0.220
Group 6
O 0.152 0.140
S 0.180 0.184
Se 0.190 0.198
Te 0.206 0.221
Group 5
N 0.155 0.171
P 0.180 0.212
For most, but not all, negative ions, the radius of the ion is
bigger than that of the atom, but the difference is nothing like
as great as is shown if you incorrectly compare ionic radii
with covalent radii. There are also important exceptions.
I can't see how you can make any real generalisations about
this, given the uncertainties in the data.
Conclusion
If you compare the ionic radii of negative ions with the van
der Waals radii of the atoms they come from, the
uncertainties in the data make it very difficult to make any
reliable generalisations.