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Coordination, Response & Gene Technology
Coordination, Response & Gene Technology
YOUR NOTES
International A Level Biology Edexcel
CONTENTS
The Nervous System
8.1 Neurones: Types and Functions
8.2 How a Response is Generated by Effectors
8.3 The Reflex Arc
8.4 The Nerve Impulse
8.5 Myelination & Saltatory Conduction
8.6 Synapses & Neurotransmitters
8.7 The Effects of Drugs on Nervous Transmission
8.8 Detection of Stimuli
8.9 Habituation
8.10 Central & Peripheral Nervous System
Plant Hormones
8.11 Effects of Plant Hormones
8.12 Core Practical 18: Amylase in Germinating Cereal Grains
8.13 Nervous & Hormonal Coordination
The Brain
8.14 Human Brain Structures & Functions
8.15 Techniques to Investigate the Brain
8.16 Brain Disease
Gene Technology
8.17 Drug Production from Genetically Modified Organisms
8.18 Recombinant DNA
8.19 Transfer of Recombinant DNA into Other Cells
8.20 Identification of Active Genes
8.21 Bioinformatics
8.22 Risks & Benefits of Using GMOs
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Neurones have a long axon, a cell body, and an axon terminal, and some neurones are YOUR NOTES
myelinated
There are three main types of neurones
Sensory neurones carry impulses from receptors to the brain and spinal cord in
the CNS
Relay neurones are found entirely within the CNS
and connect sensory and motor neurones
Motor neurones carry impulses from the CNS to effector muscles or glands
Each type of neurone has a slightly different structure
Motor neurones
A large cell body at one end that lies within the spinal cord or brain
Many highly-branched dendrites extending from the cell body, providing many
connections with the axon terminals of other neurones
Relay neurones
Short neurones with axons and highly branched dendrites
Sensory neurones
A cell body that branches off in the middle of the axon and has no dendrites
The axon terminal is attached to a receptor cell
The section of neurone that links the axon terminal with the cell body is known as a
dendron
The section of neurone that connects the cell body with the CNS is the axon
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Receptors detect stimuli and impulses are sent through to the nervous system to bring
about a response in the effector
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The spinal cord contains both grey matter and white matter
Pulling a foot away from a sharp object is an example of a spinal reflex
The stimulus of a sharp pin is detected by a receptor cell in the skin of the foot
The skin has receptors for pressure, touch, and pain
A sensory neurone sends electrical impulses to the CNS
An electrical impulse is passed to a relay neurone in the spinal cord
A relay neurone synapses with a motor neurone
A synapse is the junction between neurones; nerve impulses cross synapses by
diffusion of a chemical called a neurotransmitter
A motor neurone carries an impulse to an effector muscle in the leg
When stimulated by the motor neurone the muscle will contract and pull the foot up
and away from the sharp object; this is the reflex response
The reflex arc for a spinal reflex is as follows
stimulus → receptor → sensory neurone → relay neurone in spinal cord → motor neurone
→ effector → response
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When stimulated by the motor neurone the muscle will contract and constrict the YOUR NOTES
pupil; this is the reflex response
When in dim light the same process occurs, but the motor neurone stimulates the radial
muscles in the iris, causing them to contract and dilate the pupil
The reflex arc for a cranial reflex is as follows
stimulus → receptor → sensory neurone → relay neurone in brain → motor neurone →
effector → response
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An action potential is the potential electrical difference produced across the axon YOUR NOTES
membrane when a neurone is stimulated e.g. when an environmental stimulus is detected
by a receptor cell
Generating an action potential
Some of the ion channels in the membrane of a neurone are voltage gated, meaning that
they open and close in response to changes in the electrical potential across the
membrane
Voltage gated ion channels are closed when the membrane is at rest, but they are
involved in the generation and transmission of action potentials
Note that not all of the channels in a neurone membrane are voltage gated e.g. some
types of potassium ion channels are open when a neurone is at rest to enable
potassium ions to diffuse out of the axon and generate a resting potential
When a neurone is stimulated the following steps occur
A small number of sodium ion channels in the axon membrane open
Sodium ions begin to move into the axon down their concentration gradient
During resting potential there is a greater concentration of sodium ions outside
the axon than inside due to the action of sodium-potassium pumps
This reduces the potential difference across the axon membrane as the inside of the
axon becomes less negative
If the potential difference reaches around -55 mV, known as the threshold potential,
more sodium ion channels open, leading to a further influx of sodium ions
This second set of sodium ion channels are voltage gated channels
Note that an action potential is only initiated if the threshold potential is
reached
Once the charge has been reversed from -70 mV to around +30 mV the membrane is
said to be depolarised and an action potential has been generated
Repolarisation
About 1 millisecond after an action potential is generated all the voltage gated sodium
channels in this section of membrane close
Voltage gated potassium channels in this section of axon membrane now open, allowing
the diffusion of potassium ions out of the axon down their concentration gradient
Remember that the sodium-potassium pumps have not stopped working during the
action potential; hence the potassium ion gradient is still present
This movement of potassium ions causes the inside of the axon to become negatively
charged again, a process known as repolarisation
There is a short period during which the membrane potential is more negative than
resting potential; this is known as hyperpolarisation
The period during which the membrane is hyperpolarised is known as the refractory
period
The membrane is unresponsive to stimulation during the refractory period, so a
new action potential cannot be generated at this time
This makes the action potentials discrete events and means the impulse
can only travel in one direction
This is essential for the successful and efficient transmission of nerve impulses
along neurones
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The voltage gated potassium channels then close, and the sodium-potassium YOUR NOTES
pumps work to restore resting potential
Only once resting potential is restored can the membrane be stimulated again
The depolarisation and repolarisation of an action potential can be clearly seen in a graph of
membrane potential against time
Transmission of an action potential
Once an action potential has been generated it can be propagated, or transmitted, along
the length of the axon
The depolarisation of the membrane at the site of the first action potential
causes sodium ions to diffuse along the cytoplasm into the next section of the
axon, depolarising the membrane in this new section, and causing voltage gated
sodium channels to open
This triggers another action potential in this section of the axon membrane
This process then repeats along the length of the axon
Note that any sodium ions that diffuse backwards along the membrane are
unable to initiate a new action potential due to the hyperpolarised nature of the
membrane in the moments following an action potential
The action potential is said to move along the axon in a wave of depolarisation
In the body, this allows action potentials to begin at one end of an axon and then pass
along the entire length of the axon membrane
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Nerve impulses can be transmitted along axons by the diffusion of sodium ions
The all-or-nothing principle
Action potentials are either generated or not generated depending on whether the
threshold potential is reached; there is no such thing as a small or large action potential
If a stimulus is weak only a few sodium ion channels will open and the membrane won’t
be sufficiently depolarised to reach the threshold potential; an action potential will
not be generated
If a stimulus is strong enough to raise the membrane potential above
the threshold potential, then an action potential will be generated
This is the all-or-nothing principle
An impulse is only transmitted if the initial stimulus is sufficient to increase the
membrane potential above a threshold potential
Stimulus size can be detected by the brain because as the intensity of a
stimulus increases, the frequency of action potentials transmitted along the
neurone increases
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This means that a small stimulus may only lead to one action potential, while a large YOUR NOTES
stimulus may lead to several action potentials in a row
As the strength of a stimulus increases, the frequency at which action potentials are
generated also increases
Preventing impulse transmission
The transmission of nerve impulses is essential to survival as it allows the body to detect
and respond to stimuli
On occasion, however, it is useful to be able to prevent the transmission of impulses e.g. in
painkillers and anaesthetics
Our understanding of the way that action potentials are transmitted means that it is
possible to design medications that prevent impulse transmission
Such drugs may bind to sodium ion channels, preventing them from opening and
therefore preventing an influx of sodium ions when an axon is stimulated
Preventing sodium ion influx prevents membrane depolarisation and an action
potential cannot be generated
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Synapses are the junctions between neurones e.g. between a sensory neurone and a relay
neurone
Synaptic transmission
Electrical impulses cannot ‘jump’ across the synaptic cleft
When an action potential arrives at the end of the axon of the presynaptic neurone the
membrane becomes depolarised, causing voltage gated calcium ion channels to open
Calcium ions diffuse into the synaptic knob via calcium ion channels in the membrane
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The calcium ions cause vesicles in the synaptic knob to move towards the presynaptic YOUR NOTES
membrane where they fuse with it and release chemical messengers called
neurotransmitters into the synaptic cleft by exocytosis
A common neurotransmitter is acetylcholine, or ACh
The neurotransmitters diffuse across the synaptic cleft and bind with receptor
molecules on the postsynaptic membrane; this causes associated sodium ion
channels on the postsynaptic membrane to open, allowing sodium ions to diffuse into the
postsynaptic cell
If enough neurotransmitter molecules bind with receptors on the postsynaptic membrane,
then an action potential is generated, which then travels down the axon of
the postsynaptic neurone
Whether or not an action potential is generated depends on whether or not threshold
potential is reached, which in turn depends on the number of action potentials
arriving at the presynaptic knob
Many action potentials will cause more neurotransmitter to be released by
exocytosis
A large amount of neurotransmitter will cause many sodium ion channels to open
Many sodium ion channels opening will allow a large influx of sodium ions,
increasing the likelihood of threshold being reached
The neurotransmitters are then broken down to prevent continued stimulation of the
postsynaptic neurone
The enzyme that breaks down acetylcholine is acetylcholinesterase
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Impulses are transmitted across the synaptic cleft by the diffusion of neurotransmitters
such as acetylcholine
Additional roles of synapses
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The pupil reflex allows unconscious control of the amount of light entering the eye; this
prevents damage to the retina by bright light
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L-dopa is transported from the blood into the brain, where it is converted into dopamine in YOUR NOTES
a reaction catalysed by the enzyme dopa-decarboxylase
The effect is to increase levels of dopamine in the brain
Note, dopamine cannot be given directly to those who have Parkinson's disease as it
cannot cross the barrier between the blood and the brain
Increased levels of dopamine mean that more nerve impulses are transmitted in parts of
the brain that control movement, giving sufferers better control over their movement and
lessening the symptoms of Parkinson's disease
MDMA
MDMA is a recreational drug that is also known as ecstasy
Its use and sale are criminal offences in most parts of the world
MDMA effects multiple neurotransmitters, most notably serotonin
MDMA inhibits the reuptake of serotonin into the presynaptic neurone by binding to
the specific proteins that enable serotonin reuptake, located on the presynaptic
membrane; this increases the amount of serotonin present in the brain
Serotonin is usually reabsorbed into the presynaptic neurone to be recycled for
future action potentials
MDMA also triggers the release of further serotonin from presynaptic neurones,
further adding to the increase
Serotonin can affect people in many ways including their mood, anxiety and sleep
When an individual takes MDMA they may feel extreme euphoria and enhanced touch and
bodily sensations
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The eye focuses light on the retina, which contains many light receptors
Photoreceptors generate nerve impulses
Photoreceptors in the eye generate action potentials when stimulated by bright enough
light (rods), or by light of a particular wavelength (cones)
Light-sensitive pigments inside the photoreceptors are bleached when light falls on them
e.g.
Rod cells contain a light-sensitive pigment called rhodopsin
When light hits rhodopsin it breaks apart into constituent parts retinal and opsin
The breaking apart of rhodopsin is known as bleaching
The bleaching of light-sensitive pigments causes a chemical change in the photoreceptor
that results in the generation of a nerve impulse
Nerve impulses travel along a bipolar neurone to the optic nerve, which carries information
to the brain
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Information passes from rod and cone cells to the optic nerve via bipolar neurones. Note
that you do not need to know about ganglion cells here
The action of rod cells
The way in which rod cells pass information to the optic nerve is a bit back-to-front in
comparison to the action of other nerve cells; rather than initiating an action potential when
they are depolarised, rod cells initiate action potentials in neighbouring bipolar neurones
when they are hyperpolarised
In the dark the following occurs inside rod cells
Sodium ions are actively pumped out of rod cells, generating a concentration
gradient
Sodium ions (Na+) are positively charged ions, also known as cations
Sodium ions diffuse back down this concentration gradient into the rod cell via
sodium channels
Sodium channels are also known as cation channels because they allow the
movement of positively charged ions
At this stage there is little difference in charge between the outside and inside of the
rod cell, and the cell is said to be depolarised
In reality the inside of the rod cell is slightly negative in comparison to the outside
The depolarised rod cell releases neurotransmitters which diffuse across a synapse
to a bipolar neurone
Rather than initiating an action potential in the bipolar neurone this neurotransmitter
inhibits the generation of an action potential, preventing a nerve impulse from being
sent to the optic nerve
This neurotransmitter is said to be an inhibitory neurotransmitter
In the light the following occurs inside rod cells
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Light bleaches rhodopsin, causing it to break apart into retinal and opsin YOUR NOTES
The bleaching of rhodopsin causes the sodium ion channels in the cell surface
membrane of the rod cell to close, preventing sodium ions from diffusing back into
the rod cell
The active transport of sodium ions out of the cell is still taking place, so sodium
ions are removed from the cell but not able to return
The lack of positively charged ions entering the rod cell causes its interior to become
more negative until it reaches a hyperpolarised state
A membrane that is hyperpolarised has a more negative potential difference
across it than the resting -70 mV
The hyperpolarised rod cell stops releasing an inhibitory neurotransmitter, so the
generation of an action potential in the neighbouring bipolar neurone is no longer
inhibited
An action potential is generated in the bipolar neurone attached to the rod cell and an
impulse is sent to the optic nerve
Rod cell membranes are depolarised in the dark and hyperpolarised in the light
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Habituation to a stimulus can be studied by measuring the changes in an animal's YOUR NOTES
response to a non-harmful stimulus e.g.
Snails often respond to a stimulus by withdrawing into their shell, waiting to emerge
again until the harmful stimulus is likely to be gone
As snails become habituated to a stimulus the time taken for them to re-emerge from
their shells after a stimulus gets shorter
Apparatus
Snail
A soft object with which to provide a stimulus e.g. a damp cotton bud or a blade of grass
Stopwatch
Method
1. Place a snail on a clean, flat surface and give it time to emerge from its shell
The same surface should be used throughout the experiment
Ensure that humidity remains the same throughout as snails will withdraw in a dry
environment
2. Gently brush the snail's head with a damp cotton bud or blade of grass
It is expected that the snail will withdraw into its shell in response to the touch
3. Start the stopwatch and measure the time taken until the snail re-emerges from the shell
and fully extends its eye-stalks again
4. Repeat steps 2 and 3 10-15 times, recording the time taken until full re-emergence each
time
Ensure that the same soft object is used throughout and that the location of the
touch on the snail's body remains the same
Waiting for full extension of the eye stalks ensures that the same end-point is used
each time
5. Plot a graph of touch number against time taken for full re-emergence
The graph would be expected to show a gradual decrease in the time taken for full
re-emergence as the snail becomes habituated to the stimulus
Note that snails are living organisms and so welfare considerations should be taken into
account when using them for experimental purposes
Snails should be returned to a suitable environment that replicates their natural
habitat at the end of the experiment
If snails were taken from a garden or the school grounds then they should be
returned to the exact location from which they were removed
Any handling and transfer of snails should be carried out gently and quickly
Snails should not be exposed to high temperatures or an overly dry environment
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The nervous system consists of the central nervous system and the peripheral nervous
system
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Phytochromes are thought to influence gene expression in plants by acting as YOUR NOTES
transcription factors
PR is converted into PFR in the presence of red light
PFR can move into the nucleus via the nuclear pores
PFR binds to a protein in the nucleus known as phytochrome-interacting factor 3
(PIF3)
Once bound to PFR, PIF3 can initiate transcription
It is thought that PFR and PIF3 together are able to activate various different genes and so
control many different aspects of plant growth and development
Growth factors
Plants can respond to stimuli in various ways, including by altering their growth
E.g. a seedling will bend and grow towards the light because there is more growth on
the shaded side than on the illuminated side
This type of directional growth response is referred to as a tropism
Phototropism is a growth response to light
Geotropism is a growth response to gravity
The response to gravity is also known as gravitropism
Tropisms can be positive or negative
Positive tropisms involve growth towards a stimulus
E.g. positive phototropism is a growth response towards light
Negative tropisms involve growth away from a stimulus
E.g. negative geotropism is a growth response away from gravity i.e. upwards
The growth responses of plants rely on chemical substances that are released in response
to a stimulus
These chemical growth factors act in a similar way to the hormones that are found in
animals
Plant growth factors are sometimes referred to as plant hormones as they
are chemical messengers
Growth factors are produced in the growing parts of a plant before moving from the
growing regions to other tissues where they regulate cell growth in response to a
directional stimulus
E.g. auxin is a growth factor that stimulates cell elongation in plant
shoots and inhibits growth in cells in plant roots
Other examples of plant hormones along with some of their regulatory roles include
Gibberellins
Stem elongation
Flowering
Seed germination
Cytokinins
Cell growth and division
Abscisic acid (ABA)
Leaf loss
Seed dormancy
Ethene
Fruit ripening
Flowering
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IAA inhibits cell elongation in shoots. Note that you do not need to know about the role
played by amyloplasts in detecting the direction of gravity
Gibberellins
Gibberellins are a type of plant growth regulator involved in controlling seed
germination, stem elongation, flowering, and fruit development
When a barley seed is shed from the parent plant, it is in a state of dormancy, containing
very little water and being metabolically inactive
This allows the seed to survive harsh conditions until the conditions are right for
successful germination, e.g. the seed can survive a cold winter until temperatures rise
again in spring
The barley seed contains
An embryo
This will grow into the new plant when the seed germinates
An endosperm
This is a starch-containing energy store surrounding the embryo
An aleurone layer
This is a protein-rich layer on the outer edge of the endosperm
When the conditions are right the barley seed starts to absorb water to begin the process
of germination
This stimulates the embryo to produce gibberellins
Gibberellin molecules diffuse to the aleurone layer and stimulate the cells there
to synthesise amylase
In barley seeds it has been shown that gibberellin does this by causing an increase in
the transcription of genes coding for amylase
The amylase hydrolyses starch molecules in the endosperm, producing
soluble maltose molecules
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The maltose is converted to glucose and transported to the embryo YOUR NOTES
This glucose can be respired by the embryo, providing the embryo with the energy needed
for growth
Gibberellins in barley seeds cause the synthesis of amylase enzymes which break down
starch stores in the endosperm
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8.12 Core Practical 18: Amylase in Germinating Cereal Grains YOUR NOTES
Amylase in Germinating Cereal Grains
Cereal grains such as barley contain
An embryo
This will grow into the new plant when the seed germinates
An endosperm
This is a starch-containing energy store surrounding the embryo
An aleurone layer
This is a protein-rich layer on the outer edge of the endosperm
Barley seeds are shed from the parent plant in a state of dormancy, but when conditions
are right for germination the starch in the endosperm is broken down into first maltose and
then glucose, which provides a source of energy for the developing embryo
The breakdown of the endosperm is stimulated by production of the plant growth factor
gibberellin in the seed embryo, which initiates the production of amylase in the aleurone
layer
Amylase breaks down amylose in starch into maltose
The effect of gibberellin concentration on the production of amylase in germinating
barley seeds can be investigated using a technique called a starch agar assay
As part of this process, cereal grains need to be cut in half to remove the embryo part
of the seed; the embryo in a germinating seed would normally produce gibberellin, so
removing it allows the investigator to control the amount of gibberellin the grain is
exposed to
The embryo is found in the more pointed end of the seed, so this section must be
discarded during the investigation
Cutting the grain in half allows the part of the seed containing the embryo to be removed and
discarded; this removes the part of the seed that produces gibberellin, allowing the
investigator to control the gibberellin exposure of the remaining part of the grain
Apparatus
Measuring cylinders and pipettes
Marker pen
Cereal grains e.g. barley
3 % sodium hypochlorite solution
Filter cloth e.g. muslin
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Areas of the agar containing starch will stain blue-black YOUR NOTES
12. Measure the diameter of the clear zone around each cereal grain, recording the results for
each gibberellin concentration in a table
The larger the clear area, the more amylase was produced by the cereal grain
If several grains were used at each concentration then an average can be calculated
13. Plot a graph of gibberellin concentration against diameter of clear agar area
The diameter of the clear zone around each cereal grain indicates the amount of amylase
released; the larger the clear zone, the more amylase has been produced by the grain
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Receptors are cells that detect stimuli in the internal and external environment
The nervous system
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The muscle in the arm responds by contracting to move the hand away from the hot
surface
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The nervous system allows the detection of stimuli and the co-ordination of appropriate
responses
The hormonal system
Hormones are chemical substances produced by endocrine glands and carried by
the blood
Endocrine glands are ductless and secrete hormones directly into the blood
Hormones are sometimes known as chemical messengers
Hormones transmit information from one part of an organism to another and bring
about change by altering the activity of one or more specific target organs
Hormones can leave the blood and bind to specific receptors on the cell surface
membranes of target organs
Hormones are slower in action than nerve impulses and are therefore used to control
functions that do not need instant responses
Endocrine glands that produces hormones in animals are known collectively as the
endocrine system
Endocrine glands can be stimulated to secrete hormones by the action of another
hormone or by the arrival of a nerve impulse
The pathway of hormone action is as follows
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It is highly folded, which increases its surface area and allows it to contain a greater YOUR NOTES
number of neurones
With more neurones in the brain, more neurone connections can be made
This is important, as the more connections between neurones in the brain,
the greater the ability of the brain to carry out more complex behaviours
Beneath the cerebral cortex or grey matter layer is the 'white matter'
The white matter consists of the myelinated axons of neurones
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Some types of scan show only structure, while other allow the study of structure and
function in real time
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Stem cells could be used to replace the lost dopamine-producing cells in the YOUR NOTES
brain
Depression
Low levels of the neurotransmitter serotonin have been linked to depression
Serotonin transmits nerve impulses through the areas of the brain that control mood
Low levels of serotonin increase episodes of depression
Other brain chemicals linked to depression include noradrenaline and dopamine
Some drugs that have been developed for the treatment of depression, known as
antidepressants, work by increasing the levels of relevant neurotransmitters in the brain
SSRIs (selective serotonin reuptake inhibitors) are a class of antidepressant that
prevent the uptake of serotonin at synapses; this increases the overall levels of
serotonin in the brain
TCAs (tricyclic antidepressants) increase levels of both serotonin and noradrenaline
in the brain
MAOB inhibitors inhibit enzymes that would otherwise break down
neurotransmitters in the synaptic clefts in the brain
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The human insulin gene can be inserted into bacterial plasmid vectors which are then
transferred into bacterial cells
Genetically modified plants
A similar process can be used to insert desired genes from other organisms into plant cells
After the gene is inserted into a plasmid and then transferred to a bacterial cell, the bacteria
can be used to infect plant cells; the bacterium acts as a vector for introducing the gene
into the plant DNA
Note that this isn't the only method of introducing new genes into plant cells
Another method involves a 'gene gun'; tiny pellets are coated with the desired
DNA and then fired into the plant cells
The gene is transferred from the bacterial cell into the plant cell nucleus, after which
the plant cell is stimulated to multiply and grow into an adult plant
Each cell of the plant contains a copy of the gene coding for the desired protein
The protein can now be purified from the plant tissues, or the plant can be eaten to deliver
the drug
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Human insulin and a cholera vaccine are examples of drugs produced by modified YOUR NOTES
plants
Genetically modified animals
The gene that codes for the desired protein is injected into the nucleus of a zygote
The zygote is implanted into the uterus of a surrogate animal where it develops into an
adult animal
Every cell of this genetically modified animal will contain a copy of the gene coding for
the desired protein
The protein can be purified from e.g. the milk of the animal
Human blood clotting proteins can be produced from the milk of genetically modified
animals
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Transferring genes from bacteria into the DNA of maize plants creates recombinant DNA
Producing a transgenic organism involves the following process
Identification of the desired gene
This gene will code for a desired characteristic, e.g.
Pest resistance genes in crops
The human insulin gene
Isolation of the desired gene by, e.g.
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Using an enzyme called reverse transcriptase to convert a desired length of YOUR NOTES
mRNA back into DNA; DNA produced in this way is known as complementary DNA,
or cDNA
Cutting the gene from its location on a chromosome using enzymes
called restriction endonucleases
Designing and building synthetic DNA sequences in a lab
Multiplication of the gene, i.e. producing many copies, or clones; this can be carried
out using the polymerase chain reaction (PCR)
PCR machines known as thermocyclers use free nucleotides, DNA polymerase,
and DNA primers to produce many identical copies of a desired gene
Transfer of the desired gene into another organism's DNA using a vector, e.g. DNA
plasmids, viruses, or fatty envelopes known as liposomes
Once another organism has taken up the vector it is said to be transformed
Identification of the cells that contain the new gene by using a marker gene alongside
the desired gene; this means that any cells that take up the desired gene will take up
the marker gene as well e.g.
Antibiotic resistance; transformed cells will survive if treated with a specific
antibiotic
Fluorescence; transformed bacterial cells will fluoresce under UV light
Once the transformed cells have been identified they can be cloned, ensuring that all new
cells contain copies of the desired gene
In the case of bacteria this can be carried out in a large container known as a fermenter
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DNA can be transferred from one organism to another to produce recombinant DNA; this
process involves identification, isolation, multiplication, and transfer of the desired gene,
followed by identification and cloning of the transformed organisms
Isolating the desired gene using restriction endonucleases
Restriction endonucleases are enzymes that cut DNA
They are sometimes referred to as restriction enzymes
There are many different restriction endonucleases, each of which binds to a specific
sequence of bases known as a restriction site on DNA, e.g. the restriction endonuclease
HindIII will always bind to the base sequence AAGCTT
Restriction endonucleases separate DNA at restriction sites by cutting the sugar-
phosphate backbone in an uneven way; this leaves exposed single-stranded sequences
of bases known as 'sticky ends'
Sticky ends result in one strand of the DNA fragment being longer than the other strand
The sticky ends make it easier to insert the desired gene into another organism's DNA
or into vector DNA as they can easily form hydrogen bonds with complementary base
sequences that have been cut with the same restriction endonucleases
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Restriction enzymes produce a jagged cut at a restriction site, leaving 'sticky ends'
Inserting the desired gene into a vector using DNA ligase
Once the desired gene has been cut from DNA using the relevant restriction endonuclease,
it can then be transferred into the DNA of a vector, e.g.
A DNA plasmid
A vector organism such as a virus or bacterium
The DNA of the vector will be cut using the same restriction endonuclease as the desired
gene, leaving complementary sticky ends
The enzyme DNA ligase is used to catalyse the formation of phosphodiester bonds
between the sugar-phosphate backbone of the desired gene and that of the vector DNA
If this is carried out using a plasmid, the plasmid will be known as a recombinant
plasmid
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DNA ligase is used to join the isolated gene to the vector DNA
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Liposomes can enter cells by fusing with the cell surface membrane. Note that you do not
need to know the term endosymbiosis here
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If reference (green) and unknown (red) samples both hybridise in equal YOUR NOTES
proportions then the overall colour detected will be yellow; this shows that the
gene in question is being expressed in equal quantities in the reference individual
and the individual from whom the unknown sample was taken
If reference samples hybridise more than the unknown samples then the overall
colour detected will be green; this shows that the gene is being expressed more
in the reference individual than in the individual providing the unknown sample
If unknown samples hybridise more than the reference samples then the overall
colour detected will be red; this shows that the gene is being expressed more in
the individual providing the unknown sample than in the reference individual
Note that a lack of fluorescence indicates that the gene in question is not being
expressed at all
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E.g. High levels of expression of genes that code for receptors that bind to the YOUR NOTES
hormone oestrogen can be a factor in the progression of some cancers; if doctors
know that these genes are being expressed at high levels then drugs that block
oestrogen receptors are likely to be an effective treatment
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Bioinformatics enables the effective storage and analysis of biological data. Note that you
do not need to know about BLAST analysis
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